Bacteria (ID 188106) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Accession: PRJNA188106 ID: 188106

Bacteria

Bacterial 5S Ribosomal RNA RefSeq Targeted Loci Project

Navigate Up

This project is a component of the RefSeq Targeted Loci Project

Navigate Across

9 additional projects are components of the RefSeq Targeted Loci Project.

The 5S ribosomal RNA targeted loci project is the result of an international collaboration between a number of ribosomal RNA databases and NCBI to provide a curated and comprehensive set of complete and near full length Reference Sequence records for phylogenetic and evolutionary analyses. More...

Accession	PRJNA188106
Data Type	RefSeq Targeted Locus (Loci)
Scope	Multiisolate
Publications (total 871) Less...	Watanabe T et al., "Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: genetic insights into the sulfur oxidation pathway of betaproteobacteria.", Syst Appl Microbiol, 2014 Sep;37(6):387-95 More... Watanabe T et al., "Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: genetic insights into the sulfur oxidation pathway of betaproteobacteria.", Syst Appl Microbiol, 2014 Sep;37(6):387-95 Chan KG et al., "Complete Genome Sequence of Pandoraea pnomenusa 3kgm, a Quorum-Sensing Strain Isolated from a Former Landfill Site.", Genome Announc, 2014 May 8;2(3) Dueholm MS et al., "Complete Genome Sequences of Pseudomonas monteilii SB3078 and SB3101, Two Benzene-, Toluene-, and Ethylbenzene-Degrading Bacteria Used for Bioaugmentation.", Genome Announc, 2014 May 29;2(3) Dueholm MS et al., "Complete Genome of Rhodococcus pyridinivorans SB3094, a Methyl-Ethyl-Ketone-Degrading Bacterium Used for Bioaugmentation.", Genome Announc, 2014 May 29;2(3) Bao Y et al., "Complete Genome Sequence of Dyella jiangningensis Strain SBZ3-12, Isolated from the Surfaces of Weathered Rock.", Genome Announc, 2014 May 15;2(3) Machado VS et al., "Complete Genome Sequence of Trueperella pyogenes, an Important Opportunistic Pathogen of Livestock.", Genome Announc, 2014 May 1;2(2) Ancora M et al., "Complete Genome Sequence of a Brucella ceti ST26 Strain Isolated from a Striped Dolphin (Stenella coeruleoalba) on the Coast of Italy.", Genome Announc, 2014 Mar 6;2(2) Glaub A et al., "Complete Genome Sequence of Corynebacterium falsenii DSM 44353 To Study the Evolution of Corynebacterium Cluster 3 Species.", Genome Announc, 2014 Mar 6;2(2) Sprague LD et al., "Genome Sequence of Yersinia similis Y228T, a Member of the Yersinia pseudotuberculosis Complex.", Genome Announc, 2014 Mar 27;2(2) Wang S et al., "Whole Genome Sequence of the Probiotic Strain Lactobacillus paracasei N1115, Isolated from Traditional Chinese Fermented Milk.", Genome Announc, 2014 Mar 13;2(2) Wang X et al., "Complete Genome Sequence of Magnetospirillum gryphiswaldense MSR-1.", Genome Announc, 2014 Mar 13;2(2) Sachse K et al., "Evidence for the existence of two new members of the family Chlamydiaceae and proposal of Chlamydia avium sp. nov. and Chlamydia gallinacea sp. nov.", Syst Appl Microbiol, 2014 Mar;37(2):79-88 Chang TH et al., "Molecular evolution of the substrate utilization strategies and putative virulence factors in mosquito-associated Spiroplasma species.", Genome Biol Evol, 2014 Mar;6(3):500-9 Xie JB et al., "Comparative genomic analysis of N2-fixing and non-N2-fixing Paenibacillus spp.: organization, evolution and expression of the nitrogen fixation genes.", PLoS Genet, 2014 Mar;10(3):e1004231 Poehlein A et al., "Complete Genome Sequence of Amino Acid-Utilizing Eubacterium acidaminophilum al-2 (DSM 3953).", Genome Announc, 2014 Jun 12;2(3) Luo Q et al., "Insights into the microbial degradation of rubber and gutta-percha by analysis of the complete genome of Nocardia nova SH22a.", Appl Environ Microbiol, 2014 Jul;80(13):3895-907 Ku C et al., "Complete Genome Sequence of Spiroplasma apis B31T (ATCC 33834), a Bacterium Associated with May Disease of Honeybees (Apis mellifera).", Genome Announc, 2014 Jan 9;2(1) Thirumalapura NR et al., "Complete Genome Sequence of Ehrlichia muris Strain AS145T, a Model Monocytotropic Ehrlichia Strain.", Genome Announc, 2014 Jan 30;2(1) Deshuillers PL et al., "Complete Genome Sequence of Mycoplasma ovis Strain Michigan, a Hemoplasma of Sheep with Two Distinct 16S rRNA Genes.", Genome Announc, 2014 Jan 30;2(1) Martineau C et al., "Complete Genome Sequence of Hyphomicrobium nitrativorans Strain NL23, a Denitrifying Bacterium Isolated from Biofilm of a Methanol-Fed Denitrification System Treating Seawater at the Montreal Biodome.", Genome Announc, 2014 Jan 16;2(1) Sait M et al., "Genome sequencing and comparative analysis of three Chlamydia pecorum strains associated with different pathogenic outcomes.", BMC Genomics, 2014 Jan 14;15(1):23 Oakeson KF et al., "Genome degeneration and adaptation in a nascent stage of symbiosis.", Genome Biol Evol, 2014 Jan;6(1):76-93 Calcutt MJ et al., "Complete Genome Sequence of Mycoplasma bovoculi Strain M165/69T (ATCC 29104).", Genome Announc, 2014 Feb 20;2(1) Barbour AG et al., "Genome Sequence of Borrelia parkeri, an Agent of Enzootic Relapsing Fever in Western North America.", Genome Announc, 2014 Feb 13;2(1) Harhay GP et al., "Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal Isolates from Cattle with Shipping Fever.", Genome Announc, 2014 Feb 13;2(1) Harhay GP et al., "Complete Closed Genome Sequences of Four Mannheimia varigena Isolates from Cattle with Shipping Fever.", Genome Announc, 2014 Feb 13;2(1) Dziewit L et al., "Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids.", BMC Genomics, 2014 Feb 12;15:124 Wulff NA et al., "The complete genome sequence of 'Candidatus Liberibacter americanus', associated with Citrus huanglongbing.", Mol Plant Microbe Interact, 2014 Feb;27(2):163-76 Leclercq S et al., "Phylogenomics of "Candidatus Hepatoplasma crinochetorum," a lineage of mollicutes associated with noninsect arthropods.", Genome Biol Evol, 2014 Feb;6(2):407-15 Rudder S et al., "Genome sequence of Ensifer adhaerens OV14 provides insights into its ability as a novel vector for the genetic transformation of plant genomes.", BMC Genomics, 2014 Apr 7;15:268 Djukic M et al., "How to kill the honey bee larva: genomic potential and virulence mechanisms of Paenibacillus larvae.", PLoS One, 2014;9(3):e90914 Brown SD et al., "Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia.", Biotechnol Biofuels, 2014;7:40 Toh H et al., "Complete Genome Sequence of the Equol-Producing Bacterium Adlercreutzia equolifaciens DSM 19450T.", Genome Announc, 2013 Sep 19;1(5) Hue F et al., "Chromosome Sequence of Borrelia miyamotoi, an Uncultivable Tick-Borne Agent of Human Infection.", Genome Announc, 2013 Sep 12;1(5) Almeida B et al., "Quantitative proteomic analysis of ibuprofen-degrading Patulibacter sp. strain I11.", Biodegradation, 2013 Sep;24(5):615-30 Jiménez G et al., "Description of Bacillus toyonensis sp. nov., a novel species of the Bacillus cereus group, and pairwise genome comparisons of the species of the group by means of ANI calculations.", Syst Appl Microbiol, 2013 Sep;36(6):383-91 Bomholt C et al., "Whole-Genome Sequence of the Clinical Strain Corynebacterium argentoratense DSM 44202, Isolated from a Human Throat Specimen.", Genome Announc, 2013 Oct 3;1(5) Goudenège D et al., "Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits.", ISME J, 2013 Oct;7(10):1985-96 Morais-Silva FO et al., "Roles of HynAB and Ech, the only two hydrogenases found in the model sulfate reducer Desulfovibrio gigas.", J Bacteriol, 2013 Oct;195(20):4753-60 Darrasse A et al., "Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads.", BMC Genomics, 2013 Nov 6;14:761 do Nascimento NC et al., "Genome Sequence of Mycoplasma parvum (Formerly Eperythrozoon parvum), a Diminutive Hemoplasma of the Pig.", Genome Announc, 2013 Nov 27;1(6) Poehlein A et al., "Complete Genome Sequence of the Solvent Producer Clostridium saccharobutylicum NCP262 (DSM 13864).", Genome Announc, 2013 Nov 27;1(6) Baby V et al., "Complete Genome Sequence of the Mesoplasma florum W37 Strain.", Genome Announc, 2013 Nov 27;1(6) Chen Y et al., "Whole-genome sequencing of gentamicin-resistant Campylobacter coli isolated from U.S. retail meats reveals novel plasmid-mediated aminoglycoside resistance genes.", Antimicrob Agents Chemother, 2013 Nov;57(11):5398-405 Eidam C et al., "Complete Genome Sequence of Mannheimia haemolytica Strain 42548 from a Case of Bovine Respiratory Disease.", Genome Announc, 2013 May 30;1(3) Poehlein A et al., "Complete Genome Sequence of Clostridium stercorarium subsp. stercorarium Strain DSM 8532, a Thermophilic Degrader of Plant Cell Wall Fibers.", Genome Announc, 2013 Mar 7;1(2):e0007313 Huntley S et al., "Complete genome sequence of Myxococcus stipitatus strain DSM 14675, a fruiting myxobacterium.", Genome Announc, 2013 Mar 21;1(2):e0010013 Cheng VW et al., "Complete Genome of the Solvent-Tolerant Staphylococcus warneri Strain SG1.", Genome Announc, 2013 Mar 14;1(2):e0003813 Bazylinski DA et al., "Magnetococcus marinus gen. nov., sp. nov., a marine, magnetotactic bacterium that represents a novel lineage (Magnetococcaceae fam. nov., Magnetococcales ord. nov.) at the base of the Alphaproteobacteria.", Int J Syst Evol Microbiol, 2013 Mar;63(Pt 3):801-808 Guy L et al., "A gene transfer agent and a dynamic repertoire of secretion systems hold the keys to the explosive radiation of the emerging pathogen Bartonella.", PLoS Genet, 2013 Mar;9(3):e1003393 Bishop-Lilly KA et al., "Genome Sequencing of Four Strains of Rickettsia prowazekii, the Causative Agent of Epidemic Typhus, Including One Flying Squirrel Isolate.", Genome Announc, 2013 Jun 27;1(3) Tokuda G et al., "Maintenance of essential amino acid synthesis pathways in the Blattabacterium cuenoti symbiont of a wood-feeding cockroach.", Biol Lett, 2013 Jun 23;9(3):20121153 Jin D et al., "Dynamics of fecal microbial communities in children with diarrhea of unknown etiology and genomic analysis of associated Streptococcus lutetiensis.", BMC Microbiol, 2013 Jun 19;13:141 Kuo PA et al., "Phosphate limitation induces the intergeneric inhibition of Pseudomonas aeruginosa by Serratia marcescens isolated from paper machines.", FEMS Microbiol Ecol, 2013 Jun;84(3):577-87 Kruse T et al., "Complete genome sequence of Dehalobacter restrictus PER-K23(T.).", Stand Genomic Sci, 2013 Jul 30;8(3):375-88 Sabree ZL et al., "The nutrient supplying capabilities of Uzinura, an endosymbiont of armoured scale insects.", Environ Microbiol, 2013 Jul;15(7):1988-99 Crossman LC et al., "A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus.", ISME J, 2013 Jan;7(1):148-60 Sheppard AE et al., "Complete Genome Sequence of Bacillus thuringiensis Strain 407 Cry-.", Genome Announc, 2013 Jan;1(1) Cailliez-Grimal C et al., "Complete Chromosome Sequence of Carnobacterium maltaromaticum LMA 28.", Genome Announc, 2013 Jan;1(1) Murugapiran SK et al., "Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin.", Genome Announc, 2013 Jan;1(1) Leon MJ et al., "Draft Genome of Spiribacter salinus M19-40, an Abundant Gammaproteobacterium in Aquatic Hypersaline Environments.", Genome Announc, 2013 Jan;1(1) Tobias NJ et al., "Complete genome sequence of the frog pathogen Mycobacterium ulcerans ecovar Liflandii.", J Bacteriol, 2013 Feb;195(3):556-64 Supply P et al., "Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis.", Nat Genet, 2013 Feb;45(2):172-9 Jiménez G et al., "Complete Genome Sequence of Bacillus toyonensis BCT-7112T, the Active Ingredient of the Feed Additive Preparation Toyocerin.", Genome Announc, 2013 Dec 19;1(6) Olson AB et al., "Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation.", BMC Genomics, 2013 Dec 17;14:895 Brzuszkiewicz E et al., "Legionella oakridgensis ATCC 33761 genome sequence and phenotypic characterization reveals its replication capacity in amoebae.", Int J Med Microbiol, 2013 Dec;303(8):514-28 Nicholson WL et al., "Complete Genome Sequence of Serratia liquefaciens Strain ATCC 27592.", Genome Announc, 2013 Aug 15;1(4) Chung WC et al., "Complete Genome Sequence of Serratia marcescens WW4.", Genome Announc, 2013 Apr 4;1(2):e0012613 Tang B et al., "ContigScape: a Cytoscape plugin facilitating microbial genome gap closing.", BMC Genomics, 2013 Apr 30;14:289 Golyshin PN et al., "Genome Sequence of Thalassolituus oleivorans MIL-1 (DSM 14913T).", Genome Announc, 2013 Apr 18;1(2):e0014113 Pasternak Z et al., "By their genes ye shall know them: genomic signatures of predatory bacteria.", ISME J, 2013 Apr;7(4):756-69 Okubo T et al., "Genome analysis suggests that the soil oligotrophic bacterium Agromonas oligotrophica (Bradyrhizobium oligotrophicum) is a nitrogen-fixing symbiont of Aeschynomene indica.", Appl Environ Microbiol, 2013 Apr;79(8):2542-51 Kwon SK et al., "Genomic makeup of the marine flavobacterium Nonlabens (Donghaeana) dokdonensis and identification of a novel class of rhodopsins.", Genome Biol Evol, 2013;5(1):187-99 Kadnikov VV et al., "Genomic analysis of Melioribacter roseus, facultatively anaerobic organotrophic bacterium representing a novel deep lineage within Bacteriodetes/Chlorobi group.", PLoS One, 2013;8(1):e53047 Alves JM et al., "Genome evolution and phylogenomic analysis of Candidatus Kinetoplastibacterium, the betaproteobacterial endosymbionts of Strigomonas and Angomonas.", Genome Biol Evol, 2013;5(2):338-50 Patiño-Navarrete R et al., "Comparative genomics of Blattabacterium cuenoti: the frozen legacy of an ancient endosymbiont genome.", Genome Biol Evol, 2013;5(2):351-61 Pradel N et al., "The first genomic and proteomic characterization of a deep-sea sulfate reducer: insights into the piezophilic lifestyle of Desulfovibrio piezophilus.", PLoS One, 2013;8(1):e55130 Ku C et al., "Complete genomes of two dipteran-associated spiroplasmas provided insights into the origin, dynamics, and impacts of viral invasion in spiroplasma.", Genome Biol Evol, 2013;5(6):1151-64 Lo WS et al., "Comparison of metabolic capacities and inference of gene content evolution in mosquito-associated Spiroplasma diminutum and S. taiwanense.", Genome Biol Evol, 2013;5(8):1512-23 Saw JH et al., "Cultivation and complete genome sequencing of Gloeobacter kilaueensis sp. nov., from a lava cave in Kīlauea Caldera, Hawai'i.", PLoS One, 2013;8(10):e76376 Kwan JC et al., "Bacterial endosymbiosis in a chordate host: long-term co-evolution and conservation of secondary metabolism.", PLoS One, 2013;8(12):e80822 Wang Z et al., "Vibrio campbellii hmgA-mediated pyomelanization impairs quorum sensing, virulence, and cellular fitness.", Front Microbiol, 2013;4:379 Strobel T et al., "Complete genome sequence of Saccharothrix espanaensis DSM 44229(T) and comparison to the other completely sequenced Pseudonocardiaceae.", BMC Genomics, 2012 Sep 9;13:465 Mappley LJ et al., "Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity.", BMC Genomics, 2012 Sep 5;13:454 Butler JE et al., "Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production.", BMC Genomics, 2012 Sep 12;13:471 Thomas F et al., "Characterization of the first alginolytic operons in a marine bacterium: from their emergence in marine Flavobacteriia to their independent transfers to marine Proteobacteria and human gut Bacteroides.", Environ Microbiol, 2012 Sep;14(9):2379-94 Marx CJ et al., "Complete genome sequences of six strains of the genus Methylobacterium.", J Bacteriol, 2012 Sep;194(17):4746-8 Normand P et al., "Genome sequence of radiation-resistant Modestobacter marinus strain BC501, a representative actinobacterium that thrives on calcareous stone surfaces.", J Bacteriol, 2012 Sep;194(17):4773-4 Gaechter T et al., "Genome sequence of Enterococcus hirae (Streptococcus faecalis) ATCC 9790, a model organism for the study of ion transport, bioenergetics, and copper homeostasis.", J Bacteriol, 2012 Sep;194(18):5126-7 Parizzi LP et al., "The genome sequence of Propionibacterium acidipropionici provides insights into its biotechnological and industrial potential.", BMC Genomics, 2012 Oct 19;13:562 Raiol T et al., "Complete genome sequence of Mycobacterium massiliense.", J Bacteriol, 2012 Oct;194(19):5455 dos Santos AP et al., "Complete genome sequence of Mycoplasma wenyonii strain Massachusetts.", J Bacteriol, 2012 Oct;194(19):5458-9 Hobley L et al., "Genome analysis of a simultaneously predatory and prey-independent, novel Bdellovibrio bacteriovorus from the River Tiber, supports in silico predictions of both ancient and recent lateral gene transfer from diverse bacteria.", BMC Genomics, 2012 Nov 27;13:670 Chen HP et al., "Genomic and transcriptomic studies of an RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine)-degrading actinobacterium.", Appl Environ Microbiol, 2012 Nov;78(21):7798-800 Lucas S et al., "Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3.", J Bacteriol, 2012 Nov;194(21):5974-5 Dam B et al., "Complete genome sequence of Methylocystis sp. strain SC2, an aerobic methanotroph with high-affinity methane oxidation potential.", J Bacteriol, 2012 Nov;194(21):6008-9 Pester M et al., "Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T.", J Bacteriol, 2012 Nov;194(22):6300-1 Guimaraes AM et al., "Genome sequence of "Candidatus Mycoplasma haemolamae" strain purdue, a red blood cell pathogen of alpacas (Vicugna pacos) and llamas (Lama glama).", J Bacteriol, 2012 Nov;194(22):6312-3 Hong KW et al., "Complete genome sequence of Burkholderia sp. Strain GG4, a betaproteobacterium that reduces 3-oxo-N-acylhomoserine lactones and produces different N-acylhomoserine lactones.", J Bacteriol, 2012 Nov;194(22):6317 Qiao J et al., "Whole-genome sequence of Nocardiopsis alba strain ATCC BAA-2165, associated with honeybees.", J Bacteriol, 2012 Nov;194(22):6358-9 Xu Y et al., "Bacterial biosynthesis and maturation of the didemnin anti-cancer agents.", J Am Chem Soc, 2012 May 23;134(20):8625-32 Lam MM et al., "Comparative analysis of the first complete Enterococcus faecium genome.", J Bacteriol, 2012 May;194(9):2334-41 Shin SH et al., "Complete genome sequence of Klebsiella oxytoca KCTC 1686, used in production of 2,3-butanediol.", J Bacteriol, 2012 May;194(9):2371-2 Shin SH et al., "Complete genome sequence of Enterobacter aerogenes KCTC 2190.", J Bacteriol, 2012 May;194(9):2373-4 Chouaia B et al., "Genome sequence of Blastococcus saxobsidens DD2, a stone-inhabiting bacterium.", J Bacteriol, 2012 May;194(10):2752-3 Vera-Cabrera L et al., "Complete genome sequence of Nocardia brasiliensis HUJEG-1.", J Bacteriol, 2012 May;194(10):2761-2 Tekedar HC et al., "Genome sequence of the fish pathogen Flavobacterium columnare ATCC 49512.", J Bacteriol, 2012 May;194(10):2763-4 Byrne-Bailey KG et al., "Complete genome sequence of the anaerobic perchlorate-reducing bacterium Azospira suillum strain PS.", J Bacteriol, 2012 May;194(10):2767-8 Kim BJ et al., "Complete genome sequence of Mycobacterium intracellulare clinical strain MOTT-02.", J Bacteriol, 2012 May;194(10):2771 Wang Y et al., "Genome-wide dynamic transcriptional profiling in Clostridium beijerinckii NCIMB 8052 using single-nucleotide resolution RNA-Seq.", BMC Genomics, 2012 Mar 20;13:102 Neupane S et al., "Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9.", Stand Genomic Sci, 2012 Mar 19;6(1):54-62 Izquierdo JA et al., "Complete Genome Sequence of Clostridium clariflavum DSM 19732.", Stand Genomic Sci, 2012 Mar 19;6(1):104-15 Shin SH et al., "Genome sequence of Paenibacillus terrae HPL-003, a xylanase-producing bacterium isolated from soil found in forest residue.", J Bacteriol, 2012 Mar;194(5):1266 Pittet V et al., "Complete genome sequence of the beer spoilage organism Pediococcus claussenii ATCC BAA-344T.", J Bacteriol, 2012 Mar;194(5):1271-2 do Nascimento NC et al., "Complete genome sequence of Mycoplasma haemocanis strain Illinois.", J Bacteriol, 2012 Mar;194(6):1605-6 Fournier PE et al., "Complete genome sequence of Rickettsia slovaca, the agent of tick-borne lymphadenitis.", J Bacteriol, 2012 Mar;194(6):1612 Trost E et al., "Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia.", J Bacteriol, 2012 Jun;194(12):3199-215 Huntley S et al., "Complete genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259.", J Bacteriol, 2012 Jun;194(11):3012-3 Okumura K et al., "Complete genome sequence of Melissococcus plutonius DAT561, a strain that shows an unusual growth profile and is representative of an endemic cluster in Japan.", J Bacteriol, 2012 Jun;194(11):3014 Barbier P et al., "Complete genome sequence of Flavobacterium indicum GPSTA100-9T, isolated from warm spring water.", J Bacteriol, 2012 Jun;194(11):3024-5 Wu H et al., "Genomic and transcriptomic insights into the thermo-regulated biosynthesis of validamycin in Streptomyces hygroscopicus 5008.", BMC Genomics, 2012 Jul 24;13:337 Grimaud R et al., "Genome sequence of the marine bacterium Marinobacter hydrocarbonoclasticus SP17, which forms biofilms on hydrophobic organic compounds.", J Bacteriol, 2012 Jul;194(13):3539-40 Nagashima S et al., "Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144.", J Bacteriol, 2012 Jul;194(13):3541-2 McMullen PD et al., "Genome sequence of Listeria monocytogenes 07PF0776, a cardiotropic serovar 4b strain.", J Bacteriol, 2012 Jul;194(13):3552 Filippini M et al., "Genome sequence of Fibrella aestuarina BUZ 2(T), a filamentous marine bacterium.", J Bacteriol, 2012 Jul;194(13):3555 Elbir H et al., "Complete genome sequence of Borrelia crocidurae.", J Bacteriol, 2012 Jul;194(14):3723-4 Clifford RJ et al., "Complete genome sequence of Providencia stuartii clinical isolate MRSN 2154.", J Bacteriol, 2012 Jul;194(14):3736-7 Goto T et al., "Complete genome sequence of Helicobacter cinaedi strain PAGU611, isolated in a case of human bacteremia.", J Bacteriol, 2012 Jul;194(14):3744-5 Grote J et al., "Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones.", Proc Natl Acad Sci U S A, 2012 Jan 10;109(2):506-10 Callaghan AV et al., "The genome sequence of Desulfatibacillum alkenivorans AK-01: a blueprint for anaerobic alkane oxidation.", Environ Microbiol, 2012 Jan;14(1):101-13 Garcia Costas AM et al., "Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll-based photoheterotroph belonging to the phylum Acidobacteria.", Environ Microbiol, 2012 Jan;14(1):177-90 Morohoshi T et al., "Complete genome sequence and characterization of the N-acylhomoserine lactone-degrading gene of the potato leaf-associated Solibacillus silvestris.", J Biosci Bioeng, 2012 Jan;113(1):20-5 Sabree ZL et al., "Genome shrinkage and loss of nutrient-providing potential in the obligate symbiont of the primitive termite Mastotermes darwiniensis.", Appl Environ Microbiol, 2012 Jan;78(1):204-10 Da K et al., "Potato cytosine methylation and gene expression changes induced by a beneficial bacterial endophyte, Burkholderia phytofirmans strain PsJN.", Plant Physiol Biochem, 2012 Jan;50(1):24-34 Siezen RJ et al., "Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome.", J Bacteriol, 2012 Jan;194(1):195-6 Huo YY et al., "Complete genome sequence of Pelagibacterium halotolerans B2(T).", J Bacteriol, 2012 Jan;194(1):197-8 Masai E et al., "Complete genome sequence of Sphingobium sp. strain SYK-6, a degrader of lignin-derived biaryls and monoaryls.", J Bacteriol, 2012 Jan;194(2):534-5 Lee SH et al., "Complete genome sequence of the BTEX-degrading bacterium Pseudoxanthomonas spadix BD-a59.", J Bacteriol, 2012 Jan;194(2):544 Schutzer SE et al., "Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii.", J Bacteriol, 2012 Jan;194(2):545-6 Vuilleumier S et al., "Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z.", J Bacteriol, 2012 Jan;194(2):551-2 Kim SH et al., "Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction.", BMC Microbiol, 2012 Feb 8;12:21 Ormeño-Orrillo E et al., "Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.).", BMC Genomics, 2012 Dec 27;13:735 Sloan DB et al., "Endosymbiotic bacteria as a source of carotenoids in whiteflies.", Biol Lett, 2012 Dec 23;8(6):986-9 Oehler D et al., "Genome-guided analysis of physiological and morphological traits of the fermentative acetate oxidizer Thermacetogenium phaeum.", BMC Genomics, 2012 Dec 23;13:723 Rückert C et al., "Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093(T) (= DSM 44683(T)).", Stand Genomic Sci, 2012 Dec 19;7(2):284-93 Leonard MT et al., "Complete genome sequence of Liberibacter crescens BT-1.", Stand Genomic Sci, 2012 Dec 19;7(2):271-83 Kwan JC et al., "Genome streamlining and chemical defense in a coral reef symbiosis.", Proc Natl Acad Sci U S A, 2012 Dec 11;109(50):20655-60 Aklujkar M et al., "The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.", BMC Genomics, 2012 Dec 10;13:690 Thole S et al., "Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life.", ISME J, 2012 Dec;6(12):2229-44 Sloan DB et al., "Genome reduction and co-evolution between the primary and secondary bacterial symbionts of psyllids.", Mol Biol Evol, 2012 Dec;29(12):3781-92 Guo Y et al., "Draft genome sequence of Rahnella aquatilis strain HX2, a plant growth-promoting rhizobacterium isolated from vineyard soil in Beijing, China.", J Bacteriol, 2012 Dec;194(23):6646-7 Jung JY et al., "Complete genome sequence of Leuconostoc gelidum strain JB7, isolated from kimchi.", J Bacteriol, 2012 Dec;194(23):6665 Jung JY et al., "Complete genome sequence of Leuconostoc carnosum strain JB16, isolated from kimchi.", J Bacteriol, 2012 Dec;194(23):6672-3 Lai Q et al., "Complete genome sequence of Alcanivorax dieselolei type strain B5.", J Bacteriol, 2012 Dec;194(23):6674 de Oliveira Cunha C et al., "Complete genome sequence of Burkholderia phenoliruptrix BR3459a (CLA1), a heat-tolerant, nitrogen-fixing symbiont of Mimosa flocculosa.", J Bacteriol, 2012 Dec;194(23):6675-6 Lai Q et al., "Complete genome sequence of the pyrene-degrading bacterium Cycloclasticus sp. strain P1.", J Bacteriol, 2012 Dec;194(23):6677 MacInnes JI et al., "Complete genome sequence of Actinobacillus suis H91-0380, a virulent serotype O2 strain.", J Bacteriol, 2012 Dec;194(23):6686-7 Carneiro AR et al., "Genome sequence of Exiguobacterium antarcticum B7, isolated from a biofilm in Ginger Lake, King George Island, Antarctica.", J Bacteriol, 2012 Dec;194(23):6689-90 Chai B et al., "Draft genome sequence of high-melanin-yielding Aeromonas media strain WS.", J Bacteriol, 2012 Dec;194(23):6693-4 Jiang BG et al., "Genome sequence of Borrelia afzelii Strain HLJ01, isolated from a patient in China.", J Bacteriol, 2012 Dec;194(24):7014-5 Kontur WS et al., "Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome.", J Bacteriol, 2012 Dec;194(24):7016-7 Fujimura R et al., "Complete genome sequence of Leptospirillum ferrooxidans strain C2-3, isolated from a fresh volcanic ash deposit on the island of Miyake, Japan.", J Bacteriol, 2012 Aug;194(15):4122-3 Villeneuve C et al., "Complete genome sequences of Methylophaga sp. strain JAM1 and Methylophaga sp. strain JAM7.", J Bacteriol, 2012 Aug;194(15):4126-7 Kang X et al., "Complete genome sequence of Streptococcus thermophilus strain MN-ZLW-002.", J Bacteriol, 2012 Aug;194(16):4428-9 Brzuszkiewicz E et al., "Complete genome sequence of the B12-producing Shimwellia blattae strain DSM 4481, isolated from a cockroach.", J Bacteriol, 2012 Aug;194(16):4436 Wise KS et al., "Complete genome sequences of Mycoplasma leachii strain PG50T and the pathogenic Mycoplasma mycoides subsp. mycoides small colony biotype strain Gladysdale.", J Bacteriol, 2012 Aug;194(16):4448-9 Huang CY et al., "Genome sequence of Blattabacterium sp. strain BGIGA, endosymbiont of the Blaberus giganteus cockroach.", J Bacteriol, 2012 Aug;194(16):4450-1 Schröder J et al., "Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient.", BMC Genomics, 2012 Apr 23;13:141 Hiessl S et al., "Involvement of two latex-clearing proteins during rubber degradation and insights into the subsequent degradation pathway revealed by the genome sequence of Gordonia polyisoprenivorans strain VH2.", Appl Environ Microbiol, 2012 Apr;78(8):2874-87 Papadimitriou K et al., "Complete genome sequence of the dairy isolate Streptococcus macedonicus ACA-DC 198.", J Bacteriol, 2012 Apr;194(7):1838-9 Liu P et al., "Complete genome sequence of Klebsiella pneumoniae subsp. pneumoniae HS11286, a multidrug-resistant strain isolated from human sputum.", J Bacteriol, 2012 Apr;194(7):1841-2 Zoropogui A et al., "Genome sequence of the human- and animal-pathogenic strain Nocardia cyriacigeorgica GUH-2.", J Bacteriol, 2012 Apr;194(8):2098-9 Jans C et al., "Complete genome sequence of the African dairy isolate Streptococcus infantarius subsp. infantarius strain CJ18.", J Bacteriol, 2012 Apr;194(8):2105-6 Yeganeh LP et al., "Complete genome sequence of Oceanimonas sp. GK1, a halotolerant bacterium from Gavkhouni Wetland in Iran.", J Bacteriol, 2012 Apr;194(8):2123-4 Hébert L et al., "Genomic characterization of the Taylorella genus.", PLoS One, 2012;7(1):e29953 Bentley SD et al., "The genome of Mycobacterium africanum West African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex.", PLoS Negl Trop Dis, 2012;6(2):e1552 Yuan M et al., "Genome sequence and transcriptome analysis of the radioresistant bacterium Deinococcus gobiensis: insights into the extreme environmental adaptations.", PLoS One, 2012;7(3):e34458 Poehlein A et al., "An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis.", PLoS One, 2012;7(3):e33439 Geng J et al., "Complete genome and transcriptomes of Streptococcus parasanguinis FW213: phylogenic relations and potential virulence mechanisms.", PLoS One, 2012;7(4):e34769 Liu Z et al., "Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi.", Front Microbiol, 2012;3:185 Zhaxybayeva O et al., "Genome sequence of the mesophilic Thermotogales bacterium Mesotoga prima MesG1.Ag.4.2 reveals the largest Thermotogales genome to date.", Genome Biol Evol, 2012;4(8):700-8 Bottacini F et al., "Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut.", PLoS One, 2012;7(9):e44229 Hartwich K et al., "The purine-utilizing bacterium Clostridium acidurici 9a: a genome-guided metabolic reconsideration.", PLoS One, 2012;7(12):e51662 Chen YT et al., "Whole-genome sequencing and identification of Morganella morganii KT pathogenicity-related genes.", BMC Genomics, 2012;13 Suppl 7(Suppl 7):S4 Tang S et al., "Semi-automatic in silico gap closure enabled de novo assembly of two Dehalobacter genomes from metagenomic data.", PLoS One, 2012;7(12):e52038 Wang Y et al., "Single-nucleotide resolution analysis of the transcriptome structure of Clostridium beijerinckii NCIMB 8052 using RNA-Seq.", BMC Genomics, 2011 Sep 30;12:479 Wang Z et al., "Genomic insights into an obligate epibiotic bacterial predator: Micavibrio aeruginosavorus ARL-13.", BMC Genomics, 2011 Sep 21;12:453 Prakash T et al., "Complete genome sequences of rat and mouse segmented filamentous bacteria, a potent inducer of th17 cell differentiation.", Cell Host Microbe, 2011 Sep 15;10(3):273-84 Mela F et al., "Dual transcriptional profiling of a bacterial/fungal confrontation: Collimonas fungivorans versus Aspergillus niger.", ISME J, 2011 Sep;5(9):1494-504 Kornspan JD et al., "Genome analysis of a Mycoplasma hyorhinis strain derived from a primary human melanoma cell line.", J Bacteriol, 2011 Sep;193(17):4543-4 Su F et al., "Genome sequence of the thermophilic strain Bacillus coagulans 2-6, an efficient producer of high-optical-purity L-lactic acid.", J Bacteriol, 2011 Sep;193(17):4563-4 Sales CM et al., "Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190.", J Bacteriol, 2011 Sep;193(17):4549-50 Cai M et al., "Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soil.", J Bacteriol, 2011 Sep;193(17):4538-9 Klippel B et al., "Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae.", J Bacteriol, 2011 Sep;193(17):4545-6 Volland S et al., "Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5.", J Bacteriol, 2011 Sep;193(18):5043 Oosterkamp MJ et al., "Genome sequences of Alicycliphilus denitrificans strains BC and K601T.", J Bacteriol, 2011 Sep;193(18):5028-9 Poehlein A et al., "Complete genome sequence of the type strain Cupriavidus necator N-1.", J Bacteriol, 2011 Sep;193(18):5017 Zhou L et al., "Diversity and plasticity of the intracellular plant pathogen and insect symbiont "Candidatus Liberibacter asiaticus" as revealed by hypervariable prophage genes with intragenic tandem repeats.", Appl Environ Microbiol, 2011 Sep;77(18):6663-73 Lazarev VN et al., "Complete genome and proteome of Acholeplasma laidlawii.", J Bacteriol, 2011 Sep;193(18):4943-53 Li ZF et al., "Genome sequence of the halotolerant marine bacterium Myxococcus fulvus HW-1.", J Bacteriol, 2011 Sep;193(18):5015-6 Barbe V et al., "Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites.", J Bacteriol, 2011 Sep;193(18):5055-6 Kuwahara H et al., "Loss of genes for DNA recombination and repair in the reductive genome evolution of thioautotrophic symbionts of Calyptogena clams.", BMC Evol Biol, 2011 Oct 3;11:285 Kallimanis A et al., "Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1.", Stand Genomic Sci, 2011 Oct 15;5(1):144-53 Tajima N et al., "Genomic structure of the cyanobacterium Synechocystis sp. PCC 6803 strain GT-S.", DNA Res, 2011 Oct;18(5):393-9 Lee SH et al., "Complete genome sequence of Weissella koreensis KACC 15510, isolated from kimchi.", J Bacteriol, 2011 Oct;193(19):5534 Lee SH et al., "Complete genome sequence of Leuconostoc kimchii strain C2, isolated from Kimchi.", J Bacteriol, 2011 Oct;193(19):5548 Ghosh W et al., "Whole-genome shotgun sequencing of the sulfur-oxidizing chemoautotroph Tetrathiobacter kashmirensis.", J Bacteriol, 2011 Oct;193(19):5553-4 Li B et al., "Complete genome analysis of Sulfobacillus acidophilus strain TPY, isolated from a hydrothermal vent in the Pacific Ocean.", J Bacteriol, 2011 Oct;193(19):5555-6 Manfredi P et al., "Complete genome sequence of the dog commensal and human pathogen Capnocytophaga canimorsus strain 5.", J Bacteriol, 2011 Oct;193(19):5558-9 Duan C et al., "Complete genome sequence of Rickettsia heilongjiangensis, an emerging tick-transmitted human pathogen.", J Bacteriol, 2011 Oct;193(19):5564-5 Swithers KS et al., "Genome sequence of Kosmotoga olearia strain TBF 19.5.1, a thermophilic bacterium with a wide growth temperature range, isolated from the Troll B oil platform in the North Sea.", J Bacteriol, 2011 Oct;193(19):5566-7 Suen G et al., "Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7.", J Bacteriol, 2011 Oct;193(19):5574-5 Marx H et al., "Genome sequence of the ruminal bacterium Megasphaera elsdenii.", J Bacteriol, 2011 Oct;193(19):5578-9 Chen Y et al., "Complete genome sequence of Alicyclobacillus acidocaldarius strain Tc-4-1.", J Bacteriol, 2011 Oct;193(19):5602-3 Schröder J et al., "Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation.", BMC Genomics, 2011 Nov 3;12:545 Gounder K et al., "Sequence of the hyperplastic genome of the naturally competent Thermus scotoductus SA-01.", BMC Genomics, 2011 Nov 24;12:577 Touchon M et al., "Complete genome sequence of the fish pathogen Flavobacterium branchiophilum.", Appl Environ Microbiol, 2011 Nov;77(21):7656-62 Chen M et al., "Complete genome sequence of the type strain Pseudomonas stutzeri CGMCC 1.1803.", J Bacteriol, 2011 Nov;193(21):6095 Shahinas D et al., "Whole-genome sequence of Streptococcus pseudopneumoniae isolate IS7493.", J Bacteriol, 2011 Nov;193(21):6102-3 Liu L et al., "Complete genome sequence of the industrial strain Ketogulonicigenium vulgare WSH-001.", J Bacteriol, 2011 Nov;193(21):6108-9 Ishii S et al., "Complete genome sequence of the denitrifying and N(2)O-reducing bacterium Pseudogulbenkiania sp. strain NH8B.", J Bacteriol, 2011 Nov;193(22):6395-6 Tae H et al., "Revised genome sequence of Brucella suis 1330.", J Bacteriol, 2011 Nov;193(22):6410 Toh H et al., "Complete genome sequences of Arcobacter butzleri ED-1 and Arcobacter sp. strain L, both isolated from a microbial fuel cell.", J Bacteriol, 2011 Nov;193(22):6411-2 van Passel MW et al., "Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems.", J Bacteriol, 2011 May;193(9):2367-8 Miller DA et al., "Complete genome sequence of the cellulose-degrading bacterium Cellulosilyticum lentocellum.", J Bacteriol, 2011 May;193(9):2357-8 Voigt A et al., "Full-length de novo sequence of the Chlamydophila psittaci type strain, 6BC.", J Bacteriol, 2011 May;193(10):2662-3 Zhan Y et al., "Genome sequence of Acinetobacter calcoaceticus PHEA-2, isolated from industry wastewater.", J Bacteriol, 2011 May;193(10):2672-3 Abt B et al., "Complete genome sequence of Leadbetterella byssophila type strain (4M15).", Stand Genomic Sci, 2011 Mar 4;4(1):2-12 Gibbons HS et al., "Genomic signatures of strain selection and enhancement in Bacillus atrophaeus var. globigii, a historical biowarfare simulant.", PLoS One, 2011 Mar 25;6(3):e17836 Rechnitzer H et al., "Genomic features and insights into the biology of Mycoplasma fermentans.", Microbiology (Reading), 2011 Mar;157(Pt 3):760-773 Alegado RA et al., "Complete genome sequence of Algoriphagus sp. PR1, bacterial prey of a colony-forming choanoflagellate.", J Bacteriol, 2011 Mar;193(6):1485-6 Blumer-Schuette SE et al., "Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus.", J Bacteriol, 2011 Mar;193(6):1483-4 Lux TM et al., "Complete genome sequence of a free-living Vibrio furnissii sp. nov. strain (NCTC 11218).", J Bacteriol, 2011 Mar;193(6):1487-8 Kalhoefer D et al., "Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis.", BMC Genomics, 2011 Jun 21;12:324 You XY et al., "Unraveling the Acidithiobacillus caldus complete genome and its central metabolisms for carbon assimilation.", J Genet Genomics, 2011 Jun 20;38(6):243-52 Romine MF "Genome-wide protein localization prediction strategies for gram negative bacteria.", BMC Genomics, 2011 Jun 15;12 Suppl 1(Suppl 1):S1 Reichmann P et al., "Genome of Streptococcus oralis strain Uo5.", J Bacteriol, 2011 Jun;193(11):2888-9 Feinberg L et al., "Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313.", J Bacteriol, 2011 Jun;193(11):2906-7 Brown DR et al., "Genome sequences of Mycoplasma alligatoris A21JP2T and Mycoplasma crocodyli MP145T.", J Bacteriol, 2011 Jun;193(11):2892-3 Vishnivetskaya TA et al., "Complete genome sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b.", J Bacteriol, 2011 Jun;193(11):2880-1 Seo YS et al., "Complete genome sequence of Burkholderia gladioli BSR3.", J Bacteriol, 2011 Jun;193(12):3149 Ogawa Y et al., "The genome of Erysipelothrix rhusiopathiae, the causative agent of swine erysipelas, reveals new insights into the evolution of firmicutes and the organism's intracellular adaptations.", J Bacteriol, 2011 Jun;193(12):2959-71 Li SG et al., "Complete genome sequence of Polymorphum gilvum SL003B-26A1T, a crude oil-degrading bacterium from oil-polluted saline soil.", J Bacteriol, 2011 Jun;193(11):2894-5 Oh S et al., "Complete genome sequencing of Lactobacillus acidophilus 30SC, isolated from swine intestine.", J Bacteriol, 2011 Jun;193(11):2882-3 Ortet P et al., "Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum.", J Bacteriol, 2011 Jun;193(12):3146 Trost E et al., "Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors.", BMC Genomics, 2011 Jul 30;12:383 Audic S et al., "The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella.", BMC Evol Biol, 2011 Jul 11;11:200 Munk AC et al., "Complete genome sequence of Rhodospirillum rubrum type strain (S1).", Stand Genomic Sci, 2011 Jul 1;4(3):293-302 Huntemann M et al., "Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2)).", Stand Genomic Sci, 2011 Jul 1;4(3):303-11 Ivanova N et al., "Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL).", Stand Genomic Sci, 2011 Jul 1;4(3):312-21 Anderson I et al., "Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1).", Stand Genomic Sci, 2011 Jul 1;4(3):322-30 Sikorski J et al., "Complete genome sequence of Mahella australiensis type strain (50-1 BON).", Stand Genomic Sci, 2011 Jul 1;4(3):331-41 Munk AC et al., "Complete genome sequence of Tsukamurella paurometabola type strain (no. 33).", Stand Genomic Sci, 2011 Jul 1;4(3):342-51 Daligault H et al., "Complete genome sequence of Haliscomenobacter hydrossis type strain (O).", Stand Genomic Sci, 2011 Jul 1;4(3):352-60 Han C et al., "Complete genome sequence of Treponema succinifaciens type strain (6091).", Stand Genomic Sci, 2011 Jul 1;4(3):361-70 Han C et al., "Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR).", Stand Genomic Sci, 2011 Jul 1;4(3):371-80 Göker M et al., "Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2).", Stand Genomic Sci, 2011 Jul 1;4(3):393-401 Rosenthal AZ et al., "RNA-seq reveals cooperative metabolic interactions between two termite-gut spirochete species in co-culture.", ISME J, 2011 Jul;5(7):1133-42 Oh HM et al., "Complete genome sequence of strain IMCC9063, belonging to SAR11 subgroup 3, isolated from the Arctic Ocean.", J Bacteriol, 2011 Jul;193(13):3379-80 Nho SW et al., "Complete genome sequence and immunoproteomic analyses of the bacterial fish pathogen Streptococcus parauberis.", J Bacteriol, 2011 Jul;193(13):3356-66 Voget S et al., "Complete genome sequence of Carnobacterium sp. 17-4.", J Bacteriol, 2011 Jul;193(13):3403-4 Li Y et al., "Complete genome sequence of Aeromonas veronii strain B565.", J Bacteriol, 2011 Jul;193(13):3389-90 Weilharter A et al., "Complete genome sequence of the plant growth-promoting endophyte Burkholderia phytofirmans strain PsJN.", J Bacteriol, 2011 Jul;193(13):3383-4 Roh H et al., "Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032.", J Bacteriol, 2011 Jul;193(13):3391-2 Coleman NV et al., "Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614.", J Bacteriol, 2011 Jul;193(13):3399-400 Johansson P et al., "Genome sequence of a food spoilage lactic acid bacterium, Leuconostoc gasicomitatum LMG 18811T, in association with specific spoilage reactions.", Appl Environ Microbiol, 2011 Jul;77(13):4344-51 Liu CT et al., "Involvement of the azorhizobial chromosome partition gene (parA) in the onset of bacteroid differentiation during Sesbania rostrata stem nodule development.", Appl Environ Microbiol, 2011 Jul;77(13):4371-82 Mojica S et al., "Genome sequence of the obligate intracellular animal pathogen Chlamydia pecorum E58.", J Bacteriol, 2011 Jul;193(14):3690 Naka H et al., "Complete genome sequence of the marine fish pathogen Vibrio anguillarum harboring the pJM1 virulence plasmid and genomic comparison with other virulent strains of V. anguillarum and V. ordalii.", Infect Immun, 2011 Jul;79(7):2889-900 Johnson TJ et al., "Complete genome sequence of Gallibacterium anatis strain UMN179, isolated from a laying hen with peritonitis.", J Bacteriol, 2011 Jul;193(14):3676-7 Brown SD et al., "Complete genome sequence of the haloalkaliphilic, hydrogen-producing bacterium Halanaerobium hydrogeniformans.", J Bacteriol, 2011 Jul;193(14):3682-3 Kim HU et al., "Integrative genome-scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery.", Mol Syst Biol, 2011 Jan 18;7:460 Shimomura Y et al., "Complete genome sequencing and analysis of a Lancefield group G Streptococcus dysgalactiae subsp. equisimilis strain causing streptococcal toxic shock syndrome (STSS).", BMC Genomics, 2011 Jan 11;12:17 Lew JM et al., "TubercuList--10 years after.", Tuberculosis (Edinb), 2011 Jan;91(1):1-7 Roh H et al., "Complete genome sequence of a carbon monoxide-utilizing acetogen, Eubacterium limosum KIST612.", J Bacteriol, 2011 Jan;193(1):307-8 Oh HM et al., "Complete genome sequence of strain HTCC2503T of Parvularcula bermudensis, the type species of the order "Parvularculales" in the class Alphaproteobacteria.", J Bacteriol, 2011 Jan;193(1):305-6 Xiong XH et al., "Complete genome sequence of the bacterium Ketogulonicigenium vulgare Y25.", J Bacteriol, 2011 Jan;193(1):315-6 Stephan R et al., "Complete genome sequence of Cronobacter turicensis LMG 23827, a food-borne pathogen causing deaths in neonates.", J Bacteriol, 2011 Jan;193(1):309-10 Zhurina D et al., "Complete genome sequence of Bifidobacterium bifidum S17.", J Bacteriol, 2011 Jan;193(1):301-2 Ma M et al., "Complete genome sequence of Paenibacillus polymyxa SC2, a strain of plant growth-promoting Rhizobacterium with broad-spectrum antimicrobial activity.", J Bacteriol, 2011 Jan;193(1):311-2 Oh HM et al., "Complete genome sequence of strain HTCC2170, a novel member of the genus Maribacter in the family Flavobacteriaceae.", J Bacteriol, 2011 Jan;193(1):303-4 Pati A et al., "Complete genome sequence of Bacteroides helcogenes type strain (P 36-108).", Stand Genomic Sci, 2011 Feb 22;4(1):45-53 Abt B et al., "Complete genome sequence of Cellulophaga algicola type strain (IC166).", Stand Genomic Sci, 2011 Feb 22;4(1):72-80 Lang E et al., "Complete genome sequence of Weeksella virosa type strain (9751).", Stand Genomic Sci, 2011 Feb 22;4(1):81-90 Chertkov O et al., "Complete genome sequence of Thermomonospora curvata type strain (B9).", Stand Genomic Sci, 2011 Feb 20;4(1):13-22 Gronow S et al., "Complete genome sequence of Paludibacter propionicigenes type strain (WB4).", Stand Genomic Sci, 2011 Feb 20;4(1):36-44 Pitluck S et al., "Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1).", Stand Genomic Sci, 2011 Feb 20;4(1):54-62 Göker M et al., "Complete genome sequence of Isosphaera pallida type strain (IS1B).", Stand Genomic Sci, 2011 Feb 20;4(1):63-71 Pagani I et al., "Complete genome sequence of Desulfobulbus propionicus type strain (1pr3).", Stand Genomic Sci, 2011 Feb 20;4(1):100-10 Muyzer G et al., "Complete genome sequence of "Thioalkalivibrio sulfidophilus" HL-EbGr7.", Stand Genomic Sci, 2011 Feb 14;4(1):23-35 Engel P et al., "Parallel evolution of a type IV secretion system in radiating lineages of the host-restricted bacterial pathogen Bartonella.", PLoS Genet, 2011 Feb 10;7(2):e1001296 Schutzer SE et al., "Whole-genome sequences of thirteen isolates of Borrelia burgdorferi.", J Bacteriol, 2011 Feb;193(4):1018-20 Huntley S et al., "Comparative genomic analysis of fruiting body formation in Myxococcales.", Mol Biol Evol, 2011 Feb;28(2):1083-97 Strnad H et al., "Complete genome sequence of the haloaromatic acid-degrading bacterium Achromobacter xylosoxidans A8.", J Bacteriol, 2011 Feb;193(3):791-2 Kant R et al., "Genome sequence of Lactobacillus amylovorus GRL1112.", J Bacteriol, 2011 Feb;193(3):789-90 Lackner G et al., "Complete genome sequence of Burkholderia rhizoxinica, an Endosymbiont of Rhizopus microsporus.", J Bacteriol, 2011 Feb;193(3):783-4 Wise KS et al., "Complete genome sequence of Mycoplasma bovis type strain PG45 (ATCC 25523).", Infect Immun, 2011 Feb;79(2):982-3 Xiong XH et al., "Complete genome sequence of the bacterium Methylovorus sp. strain MP688, a high-level producer of pyrroloquinolone quinone.", J Bacteriol, 2011 Feb;193(4):1012-3 Kobayashi H et al., "Symbiont of the stink bug Plautia stali synthesizes rough-type lipopolysaccharide.", Microbiol Res, 2011 Dec 20;167(1):48-54 Sassera D et al., "Phylogenomic evidence for the presence of a flagellum and cbb(3) oxidase in the free-living mitochondrial ancestor.", Mol Biol Evol, 2011 Dec;28(12):3285-96 Collingro A et al., "Unity in variety--the pan-genome of the Chlamydiae.", Mol Biol Evol, 2011 Dec;28(12):3253-70 Janto B et al., "Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4.", Environ Microbiol, 2011 Dec;13(12):3289-309 Buchrieser C et al., "Complete genome sequence of the animal pathogen Listeria ivanovii, which provides insights into host specificities and evolution of the genus Listeria.", J Bacteriol, 2011 Dec;193(23):6787-8 Ogino H et al., "Complete genome sequence of NBRC 3288, a unique cellulose-nonproducing strain of Gluconacetobacter xylinus isolated from vinegar.", J Bacteriol, 2011 Dec;193(24):6997-8 Boden R et al., "Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09.", J Bacteriol, 2011 Dec;193(24):7001-2 Bian F et al., "Complete genome sequence of seawater bacterium Glaciecola nitratireducens FR1064(T).", J Bacteriol, 2011 Dec;193(24):7006-7 D'Auria G et al., "Complete genome sequence of Acidaminococcus intestini RYC-MR95, a Gram-negative bacterium from the phylum Firmicutes.", J Bacteriol, 2011 Dec;193(24):7008-9 Wisniewski-Dyé F et al., "Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments.", PLoS Genet, 2011 Dec;7(12):e1002430 Håfström T et al., "Complete genome sequence of Brachyspira intermedia reveals unique genomic features in Brachyspira species and phage-mediated horizontal gene transfer.", BMC Genomics, 2011 Aug 4;12:395 Vogel RF et al., "Genomic analysis reveals Lactobacillus sanfranciscensis as stable element in traditional sourdoughs.", Microb Cell Fact, 2011 Aug 30;10 Suppl 1(Suppl 1):S6 Forde BM et al., "Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts.", Microb Cell Fact, 2011 Aug 30;10 Suppl 1(Suppl 1):S13 McCutcheon JP et al., "An interdependent metabolic patchwork in the nested symbiosis of mealybugs.", Curr Biol, 2011 Aug 23;21(16):1366-72 Schwibbert K et al., "A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T.", Environ Microbiol, 2011 Aug;13(8):1973-94 Monot M et al., "Reannotation of the genome sequence of Clostridium difficile strain 630.", J Med Microbiol, 2011 Aug;60(Pt 8):1193-1199 Grinblat-Huse V et al., "Genome sequences of the zoonotic pathogens Chlamydia psittaci 6BC and Cal10.", J Bacteriol, 2011 Aug;193(15):4039-40 Zhang S et al., "Complete genome sequence of Bordetella pertussis CS, a Chinese pertussis vaccine strain.", J Bacteriol, 2011 Aug;193(15):4017-8 Lapidus A et al., "Genomes of three methylotrophs from a single niche reveal the genetic and metabolic divergence of the methylophilaceae.", J Bacteriol, 2011 Aug;193(15):3757-64 Liu S et al., "Complete genome sequence of Lactobacillus buchneri NRRL B-30929, a novel strain from a commercial ethanol plant.", J Bacteriol, 2011 Aug;193(15):4019-20 Cao B et al., "Complete genome sequence of Pusillimonas sp. T7-7, a cold-tolerant diesel oil-degrading bacterium isolated from the Bohai Sea in China.", J Bacteriol, 2011 Aug;193(15):4021-2 Okumura K et al., "Complete genome sequence of Melissococcus plutonius ATCC 35311.", J Bacteriol, 2011 Aug;193(15):4029-30 Brown SD et al., "Genome sequence of the mercury-methylating and pleomorphic Desulfovibrio africanus Strain Walvis Bay.", J Bacteriol, 2011 Aug;193(15):4037-8 Zhao B et al., "Complete genome sequence of the anaerobic, halophilic alkalithermophile Natranaerobius thermophilus JW/NM-WN-LF.", J Bacteriol, 2011 Aug;193(15):4023-4 Chain PS et al., "Genome of Ochrobactrum anthropi ATCC 49188 T, a versatile opportunistic pathogen and symbiont of several eukaryotic hosts.", J Bacteriol, 2011 Aug;193(16):4274-5 Hauser LJ et al., "Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20.", J Bacteriol, 2011 Aug;193(16):4268-9 D'Argenio V et al., "De novo sequencing and assembly of the whole genome of Novosphingobium sp. strain PP1Y.", J Bacteriol, 2011 Aug;193(16):4296 Eppinger M et al., "Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319.", J Bacteriol, 2011 Aug;193(16):4199-213 Liljeqvist M et al., "Draft genome of the psychrotolerant acidophile Acidithiobacillus ferrivorans SS3.", J Bacteriol, 2011 Aug;193(16):4304-5 Manfredi P et al., "The genome and surface proteome of Capnocytophaga canimorsus reveal a key role of glycan foraging systems in host glycoproteins deglycosylation.", Mol Microbiol, 2011 Aug;81(4):1050-60 Kuwahara T et al., "The lifestyle of the segmented filamentous bacterium: a non-culturable gut-associated immunostimulating microbe inferred by whole-genome sequencing.", DNA Res, 2011 Aug;18(4):291-303 Pullan ST et al., "Genome-wide analysis of the role of GlnR in Streptomyces venezuelae provides new insights into global nitrogen regulation in actinomycetes.", BMC Genomics, 2011 Apr 4;12:175 Lin H et al., "The complete genome sequence of 'Candidatus Liberibacter solanacearum', the bacterium associated with potato zebra chip disease.", PLoS One, 2011 Apr 28;6(4):e19135 Hébert L et al., "Genome sequence of Taylorella equigenitalis MCE9, the causative agent of contagious equine metritis.", J Bacteriol, 2011 Apr;193(7):1785 Tse H et al., "Complete genome sequence of the veterinary pathogen Staphylococcus pseudintermedius strain HKU10-03, isolated in a case of canine pyoderma.", J Bacteriol, 2011 Apr;193(7):1783-4 Messick JB et al., "Complete genome sequences of two hemotropic mycoplasmas, Mycoplasma haemofelis strain Ohio2 and Mycoplasma suis Strain Illinois.", J Bacteriol, 2011 Apr;193(8):2068-9 Barker EN et al., "Complete genome sequence of Mycoplasma haemofelis, a hemotropic mycoplasma.", J Bacteriol, 2011 Apr;193(8):2060-1 Morohoshi T et al., "Genome sequence of Microbacterium testaceum StLB037, an N-acylhomoserine lactone-degrading bacterium isolated from potato leaves.", J Bacteriol, 2011 Apr;193(8):2072-3 Xu Z et al., "Genomic characterization of Haemophilus parasuis SH0165, a highly virulent strain of serovar 5 prevalent in China.", PLoS One, 2011;6(5):e19631 Lin IH et al., "Sequencing and comparative genome analysis of two pathogenic Streptococcus gallolyticus subspecies: genome plasticity, adaptation and virulence.", PLoS One, 2011;6(5):e20519 Šmajs D et al., "Complete genome sequence of Treponema paraluiscuniculi, strain Cuniculi A: the loss of infectivity to humans is associated with genome decay.", PLoS One, 2011;6(5):e20415 Lin M et al., "Global proteomic analysis of two tick-borne emerging zoonotic agents: anaplasma phagocytophilum and ehrlichia chaffeensis.", Front Microbiol, 2011;2:24 Morita H et al., "Complete genome sequence and comparative analysis of the fish pathogen Lactococcus garvieae.", PLoS One, 2011;6(8):e23184 De Luca G et al., "The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment.", PLoS One, 2011;6(9):e23784 Neef A et al., "Genome economization in the endosymbiont of the wood roach Cryptocercus punctulatus due to drastic loss of amino acid synthesis capabilities.", Genome Biol Evol, 2011;3:1437-48 Chaston JM et al., "The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes.", PLoS One, 2011;6(11):e27909 Aklujkar M et al., "The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.", BMC Genomics, 2010 Sep 9;11:490 Gärdes A et al., "Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism.", Stand Genomic Sci, 2010 Sep 28;3(2):97-107 Pitluck S et al., "Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P).", Stand Genomic Sci, 2010 Sep 28;3(2):108-16 Yasawong M et al., "Complete genome sequence of Arcanobacterium haemolyticum type strain (11018).", Stand Genomic Sci, 2010 Sep 28;3(2):126-35 Wang XJ et al., "Genome sequence of the milbemycin-producing bacterium Streptomyces bingchenggensis.", J Bacteriol, 2010 Sep;192(17):4526-7 Tamas I et al., "Complete genome sequence of Beijerinckia indica subsp. indica.", J Bacteriol, 2010 Sep;192(17):4532-3 Jung J et al., "Complete genome sequence of the diesel-degrading Acinetobacter sp. strain DR1.", J Bacteriol, 2010 Sep;192(18):4794-5 Oh HM et al., "Complete genome sequence of Croceibacter atlanticus HTCC2559T.", J Bacteriol, 2010 Sep;192(18):4796-7 Kiss H et al., "Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1).", Stand Genomic Sci, 2010 Oct 27;3(2):153-62 Nolan M et al., "Complete genome sequence of Ferrimonas balearica type strain (PAT).", Stand Genomic Sci, 2010 Oct 27;3(2):174-82 Sikorski J et al., "Complete genome sequence of Sulfurimonas autotrophica type strain (OK10).", Stand Genomic Sci, 2010 Oct 27;3(2):194-202 Mavromatis K et al., "Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228).", Stand Genomic Sci, 2010 Oct 18;3(2):136-44 Zhao W et al., "Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism.", Cell Res, 2010 Oct;20(10):1096-108 Sun H et al., "Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509).", Stand Genomic Sci, 2010 Nov 30;3(3):325-36 Monnet C et al., "The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese.", PLoS One, 2010 Nov 24;5(11):e15489 Bennett JS et al., "Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06.", BMC Genomics, 2010 Nov 23;11:652 Sun H et al., "Complete genome sequence of Desulfarculus baarsii type strain (2st14).", Stand Genomic Sci, 2010 Nov 20;3(3):276-84 Del Rio TG et al., "Complete genome sequence of Intrasporangium calvum type strain (7 KIP).", Stand Genomic Sci, 2010 Nov 16;3(3):294-303 Purushe J et al., "Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche.", Microb Ecol, 2010 Nov;60(4):721-9 Liu W et al., "Complete genome sequence of Mycoplasma hyorhinis strain HUB-1.", J Bacteriol, 2010 Nov;192(21):5844-5 Nagata Y et al., "Complete genome sequence of the representative γ-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26.", J Bacteriol, 2010 Nov;192(21):5852-3 Miller TR et al., "Genome sequence of the dioxin-mineralizing bacterium Sphingomonas wittichii RW1.", J Bacteriol, 2010 Nov;192(22):6101-2 Kim JF et al., "Genome sequence of the polymyxin-producing plant-probiotic rhizobacterium Paenibacillus polymyxa E681.", J Bacteriol, 2010 Nov;192(22):6103-4 Elkins JG et al., "Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T.", J Bacteriol, 2010 Nov;192(22):6099-100 Bertelli C et al., "The Waddlia genome: a window into chlamydial biology.", PLoS One, 2010 May 28;5(5):e10890 Lu YK et al., "Metabolic flexibility revealed in the genome of the cyst-forming alpha-1 proteobacterium Rhodospirillum centenum.", BMC Genomics, 2010 May 25;11:325 Ren Y et al., "Complete genome sequence of Enterobacter cloacae subsp. cloacae type strain ATCC 13047.", J Bacteriol, 2010 May;192(9):2463-4 Arai H et al., "Complete genome sequence of the thermophilic, obligately chemolithoautotrophic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus TK-6.", J Bacteriol, 2010 May;192(10):2651-2 Bechah Y et al., "Genomic, proteomic, and transcriptomic analysis of virulent and avirulent Rickettsia prowazekii reveals its adaptive mutation capabilities.", Genome Res, 2010 May;20(5):655-63 Kucerova E et al., "Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species.", PLoS One, 2010 Mar 8;5(3):e9556 Ivanova N et al., "Complete genome sequence of Geodermatophilus obscurus type strain (G-20).", Stand Genomic Sci, 2010 Mar 30;2(2):158-67 Tice H et al., "Complete genome sequence of Nakamurella multipartita type strain (Y-104).", Stand Genomic Sci, 2010 Mar 30;2(2):168-75 Lail K et al., "Complete genome sequence of Spirosoma linguale type strain (1).", Stand Genomic Sci, 2010 Mar 30;2(2):176-85 Pukall R et al., "Complete genome sequence of Kribbella flavida type strain (IFO 14399).", Stand Genomic Sci, 2010 Mar 30;2(2):186-93 Wirth R et al., "Complete genome sequence of Thermocrinis albus type strain (HI 11/12).", Stand Genomic Sci, 2010 Mar 30;2(2):194-202 Sikorski J et al., "Complete genome sequence of Segniliparus rotundus type strain (CDC 1076).", Stand Genomic Sci, 2010 Mar 30;2(2):203-11 Pukall R et al., "Complete genome sequence of Conexibacter woesei type strain (ID131577).", Stand Genomic Sci, 2010 Mar 30;2(2):212-9 Harmon-Smith M et al., "Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300).", Stand Genomic Sci, 2010 Mar 30;2(2):220-7 Ettwig KF et al., "Nitrite-driven anaerobic methane oxidation by oxygenic bacteria.", Nature, 2010 Mar 25;464(7288):543-8 Sikorski J et al., "Complete genome sequence of Sulfurospirillum deleyianum type strain (5175).", Stand Genomic Sci, 2010 Mar 24;2(2):149-57 Byrne-Bailey KG et al., "Completed genome sequence of the anaerobic iron-oxidizing bacterium Acidovorax ebreus strain TPSY.", J Bacteriol, 2010 Mar;192(5):1475-6 Tse H et al., "Complete genome sequence of Staphylococcus lugdunensis strain HKU09-01.", J Bacteriol, 2010 Mar;192(5):1471-2 Steinweg C et al., "Complete genome sequence of Listeria seeligeri, a nonpathogenic member of the genus Listeria.", J Bacteriol, 2010 Mar;192(5):1473-4 Kube M et al., "Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliae.", BMC Genomics, 2010 Jun 22;11:393 Pati A et al., "Complete genome sequence of Brachyspira murdochii type strain (56-150).", Stand Genomic Sci, 2010 Jun 15;2(3):260-9 Kiss H et al., "Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460).", Stand Genomic Sci, 2010 Jun 15;2(3):270-9 Chertkov O et al., "Complete genome sequence of Aminobacterium colombiense type strain (ALA-1).", Stand Genomic Sci, 2010 Jun 15;2(3):280-9 Mavromatis K et al., "Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24).", Stand Genomic Sci, 2010 Jun 15;2(3):290-9 Pati A et al., "Complete genome sequence of Arcobacter nitrofigilis type strain (CI).", Stand Genomic Sci, 2010 Jun 15;2(3):300-8 Liolios K et al., "Complete genome sequence of Thermobispora bispora type strain (R51).", Stand Genomic Sci, 2010 Jun 15;2(3):318-26 Takaki Y et al., "Bacterial lifestyle in a deep-sea hydrothermal vent chimney revealed by the genome sequence of the thermophilic bacterium Deferribacter desulfuricans SSM1.", DNA Res, 2010 Jun;17(3):123-37 De Maayer P et al., "Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback.", J Bacteriol, 2010 Jun;192(11):2936-7 Oh HM et al., "Complete genome sequence of "Candidatus Puniceispirillum marinum" IMCC1322, a representative of the SAR116 clade in the Alphaproteobacteria.", J Bacteriol, 2010 Jun;192(12):3240-1 Akiba N et al., "phrR-like gene praR of Azorhizobium caulinodans ORS571 is essential for symbiosis with Sesbania rostrata and is involved in expression of reb genes.", Appl Environ Microbiol, 2010 Jun;76(11):3475-85 Ran L et al., "Genome erosion in a nitrogen-fixing vertically transmitted endosymbiotic multicellular cyanobacterium.", PLoS One, 2010 Jul 8;5(7):e11486 Chang YJ et al., "Complete genome sequence of Acidaminococcus fermentans type strain (VR4).", Stand Genomic Sci, 2010 Jul 29;3(1):1-14 Abt B et al., "Complete genome sequence of Cellulomonas flavigena type strain (134).", Stand Genomic Sci, 2010 Jul 29;3(1):15-25 Sikorski J et al., "Complete genome sequence of Meiothermus silvanus type strain (VI-R2).", Stand Genomic Sci, 2010 Jul 29;3(1):37-46 Labutti K et al., "Complete genome sequence of Planctomyces limnophilus type strain (Mü 290).", Stand Genomic Sci, 2010 Jul 29;3(1):47-56 Lücker S et al., "A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria.", Proc Natl Acad Sci U S A, 2010 Jul 27;107(30):13479-84 Falentin H et al., "The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications.", PLoS One, 2010 Jul 23;5(7):e11748 Köpke M et al., "Clostridium ljungdahlii represents a microbial production platform based on syngas.", Proc Natl Acad Sci U S A, 2010 Jul 20;107(29):13087-92 Strnad H et al., "Complete genome sequence of the photosynthetic purple nonsulfur bacterium Rhodobacter capsulatus SB 1003.", J Bacteriol, 2010 Jul;192(13):3545-6 Ojala T et al., "Genome sequence of Lactobacillus crispatus ST1.", J Bacteriol, 2010 Jul;192(13):3547-8 de Vries SP et al., "Genome analysis of Moraxella catarrhalis strain BBH18, [corrected] a human respiratory tract pathogen.", J Bacteriol, 2010 Jul;192(14):3574-83 Chen Y et al., "Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2.", J Bacteriol, 2010 Jul;192(14):3840-1 Oh HM et al., "Complete genome sequence analysis of Leuconostoc kimchii IMSNU 11154.", J Bacteriol, 2010 Jul;192(14):3844-5 Foster B et al., "Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07).", Stand Genomic Sci, 2010 Jan 28;2(1):1-8 Mavromatis K et al., "Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA).", Stand Genomic Sci, 2010 Jan 28;2(1):9-18 Ivanova N et al., "Complete genome sequence of Gordonia bronchialis type strain (3410).", Stand Genomic Sci, 2010 Jan 28;2(1):19-28 Nolan M et al., "Complete genome sequence of Streptosporangium roseum type strain (NI 9100).", Stand Genomic Sci, 2010 Jan 28;2(1):29-37 Spring S et al., "Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)).", Stand Genomic Sci, 2010 Jan 28;2(1):38-48 Gronow S et al., "Complete genome sequence of Veillonella parvula type strain (Te3).", Stand Genomic Sci, 2010 Jan 28;2(1):57-65 Reeve W et al., "Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419.", Stand Genomic Sci, 2010 Jan 28;2(1):77-86 Ivanova N et al., "Complete genome sequence of Haliangium ochraceum type strain (SMP-2).", Stand Genomic Sci, 2010 Jan 28;2(1):96-106 Herndon DR et al., "Complete genome sequence of Anaplasma marginale subsp. centrale.", J Bacteriol, 2010 Jan;192(1):379-80 Petty NK et al., "The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli.", J Bacteriol, 2010 Jan;192(2):525-38 Glavina Del Rio T et al., "Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034).", Stand Genomic Sci, 2010 Feb 28;2(1):87-95 Denapaite D et al., "The genome of Streptococcus mitis B6--what is a commensal?", PLoS One, 2010 Feb 25;5(2):e9426 Cazalet C et al., "Analysis of the Legionella longbeachae genome and transcriptome uncovers unique strategies to cause Legionnaires' disease.", PLoS Genet, 2010 Feb 19;6(2):e1000851 Leveau JH et al., "The bacterial genus Collimonas: mycophagy, weathering and other adaptive solutions to life in oligotrophic soil environments.", Environ Microbiol, 2010 Feb;12(2):281-92 Baudet M et al., "Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons.", Mol Cell Proteomics, 2010 Feb;9(2):415-26 Schmitz-Esser S et al., "The genome of the amoeba symbiont "Candidatus Amoebophilus asiaticus" reveals common mechanisms for host cell interaction among amoeba-associated bacteria.", J Bacteriol, 2010 Feb;192(4):1045-57 Bignell DR et al., "Streptomyces scabies 87-22 contains a coronafacic acid-like biosynthetic cluster that contributes to plant-microbe interactions.", Mol Plant Microbe Interact, 2010 Feb;23(2):161-75 Trost E et al., "The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence.", BMC Genomics, 2010 Dec 30;11:728 Williams LE et al., "Unprecedented loss of ammonia assimilation capability in a urease-encoding bacterial mutualist.", BMC Genomics, 2010 Dec 2;11:687 Djao OD et al., "Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1).", Stand Genomic Sci, 2010 Dec 15;3(3):268-75 Sikorski J et al., "Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1).", Stand Genomic Sci, 2010 Dec 15;3(3):304-14 Han C et al., "Complete genome sequence of Thermaerobacter marianensis type strain (7p75a).", Stand Genomic Sci, 2010 Dec 15;3(3):337-45 Smits TH et al., "Genome sequence of the biocontrol agent Pantoea vagans strain C9-1.", J Bacteriol, 2010 Dec;192(24):6486-7 Ichikawa N et al., "Genome sequence of Kitasatospora setae NBRC 14216T: an evolutionary snapshot of the family Streptomycetaceae.", DNA Res, 2010 Dec;17(6):393-406 Kelly WJ et al., "The glycobiome of the rumen bacterium Butyrivibrio proteoclasticus B316(T) highlights adaptation to a polysaccharide-rich environment.", PLoS One, 2010 Aug 3;5(8):e11942 Sikorski J et al., "Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288).", Stand Genomic Sci, 2010 Aug 20;3(1):57-65 Göker M et al., "Complete genome sequence of Olsenella uli type strain (VPI D76D-27C).", Stand Genomic Sci, 2010 Aug 20;3(1):76-84 Qin QL et al., "The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation.", BMC Genomics, 2010 Apr 17;11:247 Sebaihia M et al., "Complete genome sequence of the plant pathogen Erwinia amylovora strain ATCC 49946.", J Bacteriol, 2010 Apr;192(7):2020-1 Rusniok C et al., "Genome sequence of Streptococcus gallolyticus: insights into its adaptation to the bovine rumen and its ability to cause endocarditis.", J Bacteriol, 2010 Apr;192(8):2266-76 Ayala-del-Río HL et al., "The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth.", Appl Environ Microbiol, 2010 Apr;76(7):2304-12 McCutcheon JP et al., "Functional convergence in reduced genomes of bacterial symbionts spanning 200 My of evolution.", Genome Biol Evol, 2010;2:708-18 Saunders E et al., "Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255).", Stand Genomic Sci, 2009 Sep 28;1(2):174-82 Mavrommatis K et al., "Complete genome sequence of Cryptobacterium curtum type strain (12-3).", Stand Genomic Sci, 2009 Sep 24;1(2):93-100 Mavrommatis K et al., "Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845).", Stand Genomic Sci, 2009 Sep 24;1(2):101-9 Ivanova N et al., "Complete genome sequence of Sanguibacter keddieii type strain (ST-74).", Stand Genomic Sci, 2009 Sep 24;1(2):110-8 Copeland A et al., "Complete genome sequence of Catenulispora acidiphila type strain (ID 139908).", Stand Genomic Sci, 2009 Sep 24;1(2):119-25 Ivanova N et al., "Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b).", Stand Genomic Sci, 2009 Sep 24;1(2):126-32 Lang E et al., "Complete genome sequence of Dyadobacter fermentans type strain (NS114).", Stand Genomic Sci, 2009 Sep 24;1(2):133-40 Pati A et al., "Complete genome sequence of Saccharomonospora viridis type strain (P101).", Stand Genomic Sci, 2009 Sep 24;1(2):141-9 Labutti K et al., "Complete genome sequence of Anaerococcus prevotii type strain (PC1).", Stand Genomic Sci, 2009 Sep 24;1(2):159-65 Bertalan M et al., "Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5.", BMC Genomics, 2009 Sep 23;10:450 Copeland A et al., "Complete genome sequence of Atopobium parvulum type strain (IPP 1246).", Stand Genomic Sci, 2009 Sep 23;1(2):166-73 Lauro FM et al., "The genomic basis of trophic strategy in marine bacteria.", Proc Natl Acad Sci U S A, 2009 Sep 15;106(37):15527-33 Azuma Y et al., "Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus.", Nucleic Acids Res, 2009 Sep;37(17):5768-83 Kankainen M et al., "Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein.", Proc Natl Acad Sci U S A, 2009 Oct 6;106(40):17193-8 Wang Q et al., "Genome sequence of the versatile fish pathogen Edwardsiella tarda provides insights into its adaptation to broad host ranges and intracellular niches.", PLoS One, 2009 Oct 29;4(10):e7646 Lin M et al., "Analysis of complete genome sequence of Neorickettsia risticii: causative agent of Potomac horse fever.", Nucleic Acids Res, 2009 Oct;37(18):6076-91 Yang S et al., "Improved genome annotation for Zymomonas mobilis.", Nat Biotechnol, 2009 Oct;27(10):893-4 Pereyre S et al., "Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas.", PLoS Genet, 2009 Oct;5(10):e1000677 Han C et al., "Complete genome sequence of Kangiella koreensis type strain (SW-125).", Stand Genomic Sci, 2009 Nov 22;1(3):226-33 Pukall R et al., "Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1).", Stand Genomic Sci, 2009 Nov 22;1(3):234-41 Spring S et al., "Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575).", Stand Genomic Sci, 2009 Nov 22;1(3):242-53 Chovatia M et al., "Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883).", Stand Genomic Sci, 2009 Nov 22;1(3):254-61 Pukall R et al., "Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134).", Stand Genomic Sci, 2009 Nov 22;1(3):262-9 Pinto-Tomás AA et al., "Symbiotic nitrogen fixation in the fungus gardens of leaf-cutter ants.", Science, 2009 Nov 20;326(5956):1120-3 Sabree ZL et al., "Nitrogen recycling and nutritional provisioning by Blattabacterium, the cockroach endosymbiont.", Proc Natl Acad Sci U S A, 2009 Nov 17;106(46):19521-6 McBride MJ et al., "Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis.", Appl Environ Microbiol, 2009 Nov;75(21):6864-75 Ma YF et al., "The complete genome of Comamonas testosteroni reveals its genetic adaptations to changing environments.", Appl Environ Microbiol, 2009 Nov;75(21):6812-9 Oh HM et al., "Complete genome sequence of Robiginitalea biformata HTCC2501.", J Bacteriol, 2009 Nov;191(22):7144-5 McMurdie PJ et al., "Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides.", PLoS Genet, 2009 Nov;5(11):e1000714 López-Sánchez MJ et al., "Evolutionary convergence and nitrogen metabolism in Blattabacterium strain Bge, primary endosymbiont of the cockroach Blattella germanica.", PLoS Genet, 2009 Nov;5(11):e1000721 Aklujkar M et al., "The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.", BMC Microbiol, 2009 May 27;9:109 Strittmatter AW et al., "Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide.", Environ Microbiol, 2009 May;11(5):1038-55 Herlemann DP et al., "Genomic analysis of "Elusimicrobium minutum," the first cultivated representative of the phylum "Elusimicrobia" (formerly termite group 1).", Appl Environ Microbiol, 2009 May;75(9):2841-9 Nesbø CL et al., "The genome of Thermosipho africanus TCF52B: lateral genetic connections to the Firmicutes and Archaea.", J Bacteriol, 2009 Mar;191(6):1974-8 Reysenbach AL et al., "Complete and draft genome sequences of six members of the Aquificales.", J Bacteriol, 2009 Mar;191(6):1992-3 Woo PC et al., "The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats.", PLoS Genet, 2009 Mar;5(3):e1000416 de Groot A et al., "Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti.", PLoS Genet, 2009 Mar;5(3):e1000434 Degnan PH et al., "Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors.", Proc Natl Acad Sci U S A, 2009 Jun 2;106(22):9063-8 Barabote RD et al., "Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations.", Genome Res, 2009 Jun;19(6):1033-43 Lim J et al., "Complete genome sequence of Burkholderia glumae BGR1.", J Bacteriol, 2009 Jun;191(11):3758-9 Schmeisser C et al., "Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems.", Appl Environ Microbiol, 2009 Jun;75(12):4035-45 Barbe V et al., "From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later.", Microbiology (Reading), 2009 Jun;155(Pt 6):1758-1775 Larsson P et al., "Molecular evolutionary consequences of niche restriction in Francisella tularensis, a facultative intracellular pathogen.", PLoS Pathog, 2009 Jun;5(6):e1000472 Wilkinson P et al., "Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens.", BMC Genomics, 2009 Jul 7;10:302 Eustáquio AS et al., "Biosynthesis of the salinosporamide A polyketide synthase substrate chloroethylmalonyl-coenzyme A from S-adenosyl-L-methionine.", Proc Natl Acad Sci U S A, 2009 Jul 28;106(30):12295-300 Lapidus A et al., "Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10).", Stand Genomic Sci, 2009 Jul 20;1(1):3-11 Sims D et al., "Complete genome sequence of Kytococcus sedentarius type strain (541).", Stand Genomic Sci, 2009 Jul 20;1(1):12-20 Land M et al., "Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122).", Stand Genomic Sci, 2009 Jul 20;1(1):21-8 Copeland A et al., "Complete genome sequence of Desulfomicrobium baculatum type strain (X).", Stand Genomic Sci, 2009 Jul 20;1(1):29-37 Clum A et al., "Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP).", Stand Genomic Sci, 2009 Jul 20;1(1):38-45 Land M et al., "Complete genome sequence of Actinosynnema mirum type strain (101).", Stand Genomic Sci, 2009 Jul 20;1(1):46-53 Han C et al., "Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3).", Stand Genomic Sci, 2009 Jul 20;1(1):54-62 Holden MT et al., "Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis.", PLoS One, 2009 Jul 15;4(7):e6072 Yang JC et al., "The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms).", PLoS One, 2009 Jul 1;4(7):e6085 Setubal JC et al., "Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes.", J Bacteriol, 2009 Jul;191(14):4534-45 Di Bonaventura MP et al., "Complete genome sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700.", J Bacteriol, 2009 Jul;191(14):4693-4 Berglund EC et al., "Run-off replication of host-adaptability genes is associated with gene transfer agents in the genome of mouse-infecting Bartonella grahamii.", PLoS Genet, 2009 Jul;5(7):e1000546 McCutcheon JP et al., "Origin of an alternative genetic code in the extremely small and GC-rich genome of a bacterial symbiont.", PLoS Genet, 2009 Jul;5(7):e1000565 Holt KE et al., "Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi.", BMC Genomics, 2009 Jan 21;10:36 Dark MJ et al., "Conservation in the face of diversity: multistrain analysis of an intracellular bacterium.", BMC Genomics, 2009 Jan 11;10:16 Gallien S et al., "Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.", Genome Res, 2009 Jan;19(1):128-35 Winsor GL et al., "Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes.", Nucleic Acids Res, 2009 Jan;37(Database issue):D483-8 Kim JF et al., "Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011.", J Bacteriol, 2009 Jan;191(2):678-9 Lee D et al., "WeGAS: a web-based microbial genome annotation system.", Biosci Biotechnol Biochem, 2009 Jan;73(1):213-6 Beare PA et al., "Comparative genomics reveal extensive transposon-mediated genomic plasticity and diversity among potential effector proteins within the genus Coxiella.", Infect Immun, 2009 Feb;77(2):642-56 Rosenstein R et al., "Genome analysis of the meat starter culture bacterium Staphylococcus carnosus TM300.", Appl Environ Microbiol, 2009 Feb;75(3):811-22 Baba T et al., "Complete genome sequence of Macrococcus caseolyticus strain JCSCS5402, [corrected] reflecting the ancestral genome of the human-pathogenic staphylococci.", J Bacteriol, 2009 Feb;191(4):1180-90 Yue M et al., "Complete genome sequence of Haemophilus parasuis SH0165.", J Bacteriol, 2009 Feb;191(4):1359-60 Campbell BJ et al., "Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola.", PLoS Genet, 2009 Feb;5(2):e1000362 Munk C et al., "Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21).", Stand Genomic Sci, 2009 Dec 30;1(3):234-41 Nolan M et al., "Complete genome sequence of Streptobacillus moniliformis type strain (9901).", Stand Genomic Sci, 2009 Dec 30;1(3):300-7 Clum A et al., "Complete genome sequence of Pirellula staleyi type strain (ATCC 27377).", Stand Genomic Sci, 2009 Dec 30;1(3):308-16 Nolan M et al., "Complete genome sequence of Rhodothermus marinus type strain (R-10).", Stand Genomic Sci, 2009 Dec 29;1(3):283-90 Felsheim RF et al., "Genome sequence of the endosymbiont Rickettsia peacockii and comparison with virulent Rickettsia rickettsii: identification of virulence factors.", PLoS One, 2009 Dec 21;4(12):e8361 Pieretti I et al., "The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae.", BMC Genomics, 2009 Dec 17;10:616 Chen C et al., "Genome sequence of Aggregatibacter actinomycetemcomitans serotype c strain D11S-1.", J Bacteriol, 2009 Dec;191(23):7378-9 Monot M et al., "Comparative genomic and phylogeographic analysis of Mycobacterium leprae.", Nat Genet, 2009 Dec;41(12):1282-9 Ventura M et al., "The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity.", PLoS Genet, 2009 Dec;5(12):e1000785 Audic S et al., "Brucella microti: the genome sequence of an emerging pathogen.", BMC Genomics, 2009 Aug 4;10:352 Tsukada S et al., "Comparative genome-wide transcriptional profiling of Azorhizobium caulinodans ORS571 grown under free-living and symbiotic conditions.", Appl Environ Microbiol, 2009 Aug;75(15):5037-46 Duan Y et al., "Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics.", Mol Plant Microbe Interact, 2009 Aug;22(8):1011-20 Zhaxybayeva O et al., "On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales.", Proc Natl Acad Sci U S A, 2009 Apr 7;106(14):5865-70 Klasson L et al., "The mosaic genome structure of the Wolbachia wRi strain infecting Drosophila simulans.", Proc Natl Acad Sci U S A, 2009 Apr 7;106(14):5725-30 Mahowald MA et al., "Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla.", Proc Natl Acad Sci U S A, 2009 Apr 7;106(14):5859-64 Fournier PE et al., "Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction.", BMC Genomics, 2009 Apr 20;10:166 Ward NL et al., "Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.", Appl Environ Microbiol, 2009 Apr;75(7):2046-56 Slater SC et al., "Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria.", J Bacteriol, 2009 Apr;191(8):2501-11 Mavromatis K et al., "Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii.", PLoS One, 2009;4(1):e4192 Wu D et al., "Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum.", PLoS One, 2009;4(1):e4207 Liu WQ et al., "Salmonella paratyphi C: genetic divergence from Salmonella choleraesuis and pathogenic convergence with Salmonella typhi.", PLoS One, 2009;4(2):e4510 Bellgard MI et al., "Genome sequence of the pathogenic intestinal spirochete brachyspira hyodysenteriae reveals adaptations to its lifestyle in the porcine large intestine.", PLoS One, 2009;4(3):e4641 Silby MW et al., "Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens.", Genome Biol, 2009;10(5):R51 Vuilleumier S et al., "Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources.", PLoS One, 2009;4(5):e5584 Welsh EA et al., "The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle.", Proc Natl Acad Sci U S A, 2008 Sep 30;105(39):15094-9 Gross R et al., "The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae.", BMC Genomics, 2008 Sep 30;9:449 Lescot M et al., "The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii.", PLoS Genet, 2008 Sep 12;4(9):e1000185 Kube M et al., "The genome of Erwinia tasmaniensis strain Et1/99, a non-pathogenic bacterium in the genus Erwinia.", Environ Microbiol, 2008 Sep;10(9):2211-22 Amadou C et al., "Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia.", Genome Res, 2008 Sep;18(9):1472-83 Klasson L et al., "Genome evolution of Wolbachia strain wPip from the Culex pipiens group.", Mol Biol Evol, 2008 Sep;25(9):1877-87 Dybvig K et al., "Genome of Mycoplasma arthritidis.", Infect Immun, 2008 Sep;76(9):4000-8 Raymond JA et al., "A bacterial ice-binding protein from the Vostok ice core.", Extremophiles, 2008 Sep;12(5):713-7 Chivian D et al., "Environmental genomics reveals a single-species ecosystem deep within Earth.", Science, 2008 Oct 10;322(5899):275-8 Thomson NR et al., "Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways.", Genome Res, 2008 Oct;18(10):1624-37 Fritsche K et al., "Identification and characterization of genes underlying chitinolysis in Collimonas fungivorans Ter331.", FEMS Microbiol Ecol, 2008 Oct;66(1):123-35 Rodrigues DF et al., "Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach.", BMC Genomics, 2008 Nov 18;9:547 Hongoh Y et al., "Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut.", Science, 2008 Nov 14;322(5904):1108-9 van de Werken HJ et al., "Hydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus.", Appl Environ Microbiol, 2008 Nov;74(21):6720-9 Weiner RM et al., "Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T.", PLoS Genet, 2008 May 30;4(5):e1000087 Funabashi M et al., "Phenolic lipids synthesized by type III polyketide synthase confer penicillin resistance on Streptomyces griseus.", J Biol Chem, 2008 May 16;283(20):13983-91 Matejková P et al., "Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays.", BMC Microbiol, 2008 May 15;8:76 Romine MF et al., "Identification of mobile elements and pseudogenes in the Shewanella oneidensis MR-1 genome.", Appl Environ Microbiol, 2008 May;74(10):3257-65 Stinear TP et al., "Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis.", Genome Res, 2008 May;18(5):729-41 Mandel MJ et al., "Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artefactual expansions.", BMC Genomics, 2008 Mar 25;9:138 Bentley SD et al., "Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation.", J Bacteriol, 2008 Mar;190(6):2150-60 Hirano S et al., "Conditionally positive effect of the TetR-family transcriptional regulator AtrA on streptomycin production by Streptomyces griseus.", Microbiology (Reading), 2008 Mar;154(Pt 3):905-914 Lee KB et al., "The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571.", BMC Genomics, 2008 Jun 4;9:271 Morita H et al., "Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production.", DNA Res, 2008 Jun 30;15(3):151-61 Kube M et al., "The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali'.", BMC Genomics, 2008 Jun 26;9:306 Tran-Nguyen LT et al., "Comparative genome analysis of "Candidatus Phytoplasma australiense" (subgroup tuf-Australia I; rp-A) and "Ca. Phytoplasma asteris" Strains OY-M and AY-WB.", J Bacteriol, 2008 Jun;190(11):3979-91 Ohnishi Y et al., "Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350.", J Bacteriol, 2008 Jun;190(11):4050-60 Pearson MM et al., "Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility.", J Bacteriol, 2008 Jun;190(11):4027-37 Norton JM et al., "Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment.", Appl Environ Microbiol, 2008 Jun;74(11):3559-72 Takarada H et al., "Complete genome sequence of the soil actinomycete Kocuria rhizophila.", J Bacteriol, 2008 Jun;190(12):4139-46 Hou S et al., "Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia.", Biol Direct, 2008 Jul 1;3:26 Sattley WM et al., "The genome of Heliobacterium modesticaldum, a phototrophic representative of the Firmicutes containing the simplest photosynthetic apparatus.", J Bacteriol, 2008 Jul;190(13):4687-96 Lapidus A et al., "Extending the Bacillus cereus group genomics to putative food-borne pathogens of different toxicity.", Chem Biol Interact, 2008 Jan 30;171(2):236-49 Callanan M et al., "Genome sequence of Lactobacillus helveticus, an organism distinguished by selective gene loss and insertion sequence element expansion.", J Bacteriol, 2008 Jan;190(2):727-35 Thomson NR et al., "Chlamydia trachomatis: genome sequence analysis of lymphogranuloma venereum isolates.", Genome Res, 2008 Jan;18(1):161-71 Goto T et al., "Complete genome sequence of Finegoldia magna, an anaerobic opportunistic pathogen.", DNA Res, 2008 Feb 29;15(1):39-47 Picardeau M et al., "Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis.", PLoS One, 2008 Feb 13;3(2):e1607 Seedorf H et al., "The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features.", Proc Natl Acad Sci U S A, 2008 Feb 12;105(6):2128-33 Swingley WD et al., "Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina.", Proc Natl Acad Sci U S A, 2008 Feb 12;105(6):2005-10 Ellison DW et al., "Genomic comparison of virulent Rickettsia rickettsii Sheila Smith and avirulent Rickettsia rickettsii Iowa.", Infect Immun, 2008 Feb;76(2):542-50 Foote SJ et al., "The complete genome sequence of Actinobacillus pleuropneumoniae L20 (serotype 5b).", J Bacteriol, 2008 Feb;190(4):1495-6 Sievert SM et al., "Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans.", Appl Environ Microbiol, 2008 Feb;74(4):1145-56 Hjerde E et al., "The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay.", BMC Genomics, 2008 Dec 19;9:616 Valdés J et al., "Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications.", BMC Genomics, 2008 Dec 11;9:597 Tauch A et al., "The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.", J Biotechnol, 2008 Aug 31;136(1-2):11-21 Tauch A et al., "Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids.", J Biotechnol, 2008 Aug 31;136(1-2):22-30 Beres SB et al., "Genome sequence of a Lancefield group C Streptococcus zooepidemicus strain causing epidemic nephritis: new information about an old disease.", PLoS One, 2008 Aug 21;3(8):e3026 Luo Y et al., "Complete genome of Phenylobacterium zucineum--a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562.", BMC Genomics, 2008 Aug 13;9:386 Naito M et al., "Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis.", DNA Res, 2008 Aug;15(4):215-25 Paul D et al., "Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T.", J Bacteriol, 2008 Aug;190(15):5531-2 DeBoy RT et al., "Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus.", J Bacteriol, 2008 Aug;190(15):5455-63 Miller WG et al., "The complete genome sequence and analysis of the human pathogen Campylobacter lari.", Foodborne Pathog Dis, 2008 Aug;5(4):371-86 Wang F et al., "Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3.", PLoS One, 2008 Apr 9;3(4):e1937 Hongoh Y et al., "Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell.", Proc Natl Acad Sci U S A, 2008 Apr 8;105(14):5555-60 Pelletier E et al., ""Candidatus Cloacamonas acidaminovorans": genome sequence reconstruction provides a first glimpse of a new bacterial division.", J Bacteriol, 2008 Apr;190(7):2572-9 Kim JF et al., "Complete genome sequence of Leuconostoc citreum KM20.", J Bacteriol, 2008 Apr;190(8):3093-4 Hu X et al., "Complete genome sequence of the mosquitocidal bacterium Bacillus sphaericus C3-41 and comparison with those of closely related Bacillus species.", J Bacteriol, 2008 Apr;190(8):2892-902 Saw JH et al., "Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1.", Genome Biol, 2008;9(11):R161 Gioia J et al., "Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032.", PLoS One, 2007 Sep 26;2(9):e928 Chen XH et al., "Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42.", Nat Biotechnol, 2007 Sep;25(9):1007-14 Suzuki S et al., "Rhizobial factors required for stem nodule maturation and maintenance in Sesbania rostrata-Azorhizobium caulinodans ORS571 symbiosis.", Appl Environ Microbiol, 2007 Oct;73(20):6650-9 Kaakoush NO et al., "Identification of disulfide reductases in Campylobacterales: a bioinformatics investigation.", Antonie Van Leeuwenhoek, 2007 Nov;92(4):429-41 Vickerman MM et al., "Genome-wide transcriptional changes in Streptococcus gordonii in response to competence signaling peptide.", J Bacteriol, 2007 Nov;189(21):7799-807 Blanc G et al., "Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome.", Genome Res, 2007 Nov;17(11):1657-64 Schneiker S et al., "Complete genome sequence of the myxobacterium Sorangium cellulosum.", Nat Biotechnol, 2007 Nov;25(11):1281-9 Cho NH et al., "The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes.", Proc Natl Acad Sci U S A, 2007 May 8;104(19):7981-6 Kuwahara H et al., "Reduced genome of the thioautotrophic intracellular symbiont in a deep-sea clam, Calyptogena okutanii.", Curr Biol, 2007 May 15;17(10):881-6 McInerney MJ et al., "The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth.", Proc Natl Acad Sci U S A, 2007 May 1;104(18):7600-5 Myers GS et al., "Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus.", Nat Biotechnol, 2007 May;25(5):569-75 Brosch R et al., "Genome plasticity of BCG and impact on vaccine efficacy.", Proc Natl Acad Sci U S A, 2007 Mar 27;104(13):5596-601 Feng L et al., "Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir.", Proc Natl Acad Sci U S A, 2007 Mar 27;104(13):5602-7 Smith MG et al., "New insights into Acinetobacter baumannii pathogenesis revealed by high-density pyrosequencing and transposon mutagenesis.", Genes Dev, 2007 Mar 1;21(5):601-14 Gundogdu O et al., "Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence.", BMC Genomics, 2007 Jun 12;8:162 Giraud E et al., "Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia.", Science, 2007 Jun 1;316(5829):1307-12 Xie G et al., "Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii.", Appl Environ Microbiol, 2007 Jun;73(11):3536-46 Sugita C et al., "Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization.", Photosynth Res, 2007 Jul-Sep;93(1-3):55-67 Nakagawa S et al., "Deep-sea vent epsilon-proteobacterial genomes provide insights into emergence of pathogens.", Proc Natl Acad Sci U S A, 2007 Jul 17;104(29):12146-50 Kageyama Y et al., "Intragenomic diversity of the V1 regions of 16S rRNA genes in high-alkaline protease-producing Bacillus clausii spp.", Extremophiles, 2007 Jul;11(4):597-603 Sebaihia M et al., "Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes.", Genome Res, 2007 Jul;17(7):1082-92 Moran MA et al., "Ecological genomics of marine Roseobacters.", Appl Environ Microbiol, 2007 Jul;73(14):4559-69 Xu J et al., "Evolution of symbiotic bacteria in the distal human intestine.", PLoS Biol, 2007 Jul;5(7):e156 Normand P et al., "Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography.", Genome Res, 2007 Jan;17(1):7-15 Fuchs BM et al., "Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis.", Proc Natl Acad Sci U S A, 2007 Feb 20;104(8):2891-6 Newton IL et al., "The Calyptogena magnifica chemoautotrophic symbiont genome.", Science, 2007 Feb 16;315(5814):998-1000 Swingley WD et al., "The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism.", J Bacteriol, 2007 Feb;189(3):683-90 Stinear TP et al., "Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer.", Genome Res, 2007 Feb;17(2):192-200 McCutcheon JP et al., "Parallel genomic evolution and metabolic interdependence in an ancient symbiosis.", Proc Natl Acad Sci U S A, 2007 Dec 4;104(49):19392-7 Kaneko T et al., "Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843.", DNA Res, 2007 Dec 31;14(6):247-56 Miller WG et al., "The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri.", PLoS One, 2007 Dec 26;2(12):e1358 Greenberg DE et al., "Genome sequence analysis of the emerging human pathogenic acetic acid bacterium Granulibacter bethesdensis.", J Bacteriol, 2007 Dec;189(23):8727-36 Stein LY et al., "Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation.", Environ Microbiol, 2007 Dec;9(12):2993-3007 Saenz HL et al., "Genomic analysis of Bartonella identifies type IV secretion systems as host adaptability factors.", Nat Genet, 2007 Dec;39(12):1469-76 Schleheck D et al., "Parvibaculum lavamentivorans DS-1T degrades centrally substituted congeners of commercial linear alkylbenzenesulfonate to sulfophenyl carboxylates and sulfophenyl dicarboxylates.", Appl Environ Microbiol, 2007 Aug;73(15):4725-32 Audic S et al., "Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria.", PLoS Genet, 2007 Aug;3(8):e138 Muller D et al., "A tale of two oxidation states: bacterial colonization of arsenic-rich environments.", PLoS Genet, 2007 Apr 13;3(4):e53 Xu P et al., "Genome of the opportunistic pathogen Streptococcus sanguinis.", J Bacteriol, 2007 Apr;189(8):3166-75 Oliynyk M et al., "Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338.", Nat Biotechnol, 2007 Apr;25(4):447-53 Deshayes C et al., "Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?", Genome Biol, 2007;8(2):R20 Bulach DM et al., "Genome reduction in Leptospira borgpetersenii reflects limited transmission potential.", Proc Natl Acad Sci U S A, 2006 Sep 26;103(39):14560-5 Makarova K et al., "Comparative genomics of the lactic acid bacteria.", Proc Natl Acad Sci U S A, 2006 Oct 17;103(42):15611-6 Chain PS et al., "Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility.", Proc Natl Acad Sci U S A, 2006 Oct 17;103(42):15280-7 Nakabachi A et al., "The 160-kilobase genome of the bacterial endosymbiont Carsonella.", Science, 2006 Oct 13;314(5797):267 Pérez-Brocal V et al., "A small microbial genome: the end of a long symbiotic relationship?", Science, 2006 Oct 13;314(5797):312-3 Goldman BS et al., "Evolution of sensory complexity recorded in a myxobacterial genome.", Proc Natl Acad Sci U S A, 2006 Oct 10;103(41):15200-5 Badger JH et al., "Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus.", J Bacteriol, 2006 Oct;188(19):6841-50 Hain T et al., "Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes.", J Bacteriol, 2006 Nov;188(21):7405-15 Ogata H et al., "Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens.", PLoS Genet, 2006 May;2(5):e76 González V et al., "The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons.", Proc Natl Acad Sci U S A, 2006 Mar 7;103(10):3834-9 Maeda S et al., "Latent nitrate transport activity of a novel sulfate permease-like protein of the cyanobacterium Synechococcus elongatus.", J Biol Chem, 2006 Mar 3;281(9):5869-76 Starkenburg SR et al., "Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255.", Appl Environ Microbiol, 2006 Mar;72(3):2050-63 van de Guchte M et al., "The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution.", Proc Natl Acad Sci U S A, 2006 Jun 13;103(24):9274-9 Vodovar N et al., "Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila.", Nat Biotechnol, 2006 Jun;24(6):673-9 Wu D et al., "Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters.", PLoS Biol, 2006 Jun;4(6):e188 Iniesta AA et al., "A phospho-signaling pathway controls the localization and activity of a protease complex critical for bacterial cell cycle progression.", Proc Natl Acad Sci U S A, 2006 Jul 18;103(29):10935-40 Eppinger M et al., "Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines.", PLoS Genet, 2006 Jul;2(7):e120 Sebaihia M et al., "The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome.", Nat Genet, 2006 Jul;38(7):779-86 Gaudermann P et al., "Analysis of and function predictions for previously conserved hypothetical or putative proteins in Blochmannia floridanus.", BMC Microbiol, 2006 Jan 9;6:1 Glass JI et al., "Essential genes of a minimal bacterium.", Proc Natl Acad Sci U S A, 2006 Jan 10;103(2):425-30 Perrodou E et al., "ICDS database: interrupted CoDing sequences in prokaryotic genomes.", Nucleic Acids Res, 2006 Jan 1;34(Database issue):D338-43 Kosaka T et al., "Reconstruction and regulation of the central catabolic pathway in the thermophilic propionate-oxidizing syntroph Pelotomaculum thermopropionicum.", J Bacteriol, 2006 Jan;188(1):202-10 Azuma Y et al., "Genome sequence of the cat pathogen, Chlamydophila felis.", DNA Res, 2006 Feb 28;13(1):15-23 Toh H et al., "Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host.", Genome Res, 2006 Feb;16(2):149-56 Sekine M et al., "Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4.", Environ Microbiol, 2006 Feb;8(2):334-46 Beller HR et al., "The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.", J Bacteriol, 2006 Feb;188(4):1473-88 Dunning Hotopp JC et al., "Comparative genomics of emerging human ehrlichiosis agents.", PLoS Genet, 2006 Feb;2(2):e21 Maeda S et al., "A new class of signal transducer in His-Asp phosphorelay systems.", J Biol Chem, 2006 Dec 8;281(49):37868-76 Thomson NR et al., "The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081.", PLoS Genet, 2006 Dec 15;2(12):e206 Seshadri R et al., "Genome sequence of Aeromonas hydrophila ATCC 7966T: jack of all trades.", J Bacteriol, 2006 Dec;188(23):8272-82 Bauer M et al., "Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter.", Environ Microbiol, 2006 Dec;8(12):2201-13 Bettegowda C et al., "The genome and transcriptomes of the anti-tumor agent Clostridium novyi-NT.", Nat Biotechnol, 2006 Dec;24(12):1573-80 Mongodin EF et al., "Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1.", PLoS Genet, 2006 Dec;2(12):e214 Takai N et al., "A KaiC-associating SasA-RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria.", Proc Natl Acad Sci U S A, 2006 Aug 8;103(32):12109-14 Leveau JH et al., "Genomic flank-sequencing of plasposon insertion sites for rapid identification of functional genes.", J Microbiol Methods, 2006 Aug;66(2):276-85 Rodrigues DF et al., "Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov.", Extremophiles, 2006 Aug;10(4):285-94 Myers GS et al., "Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens.", Genome Res, 2006 Aug;16(8):1031-40 Schneiker S et al., "Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.", Nat Biotechnol, 2006 Aug;24(8):997-1004 Sebaihia M et al., "Comparison of the genome sequence of the poultry pathogen Bordetella avium with those of B. bronchiseptica, B. pertussis, and B. parapertussis reveals extensive diversity in surface structures associated with host interaction.", J Bacteriol, 2006 Aug;188(16):6002-15 Claesson MJ et al., "Multireplicon genome architecture of Lactobacillus salivarius.", Proc Natl Acad Sci U S A, 2006 Apr 25;103(17):6718-23 Frutos R et al., "Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity.", J Bacteriol, 2006 Apr;188(7):2533-42 Riley M et al., "Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.", Nucleic Acids Res, 2006;34(1):1-9 Young JP et al., "The genome of Rhizobium leguminosarum has recognizable core and accessory components.", Genome Biol, 2006;7(4):R34 Kuroda M et al., "Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection.", Proc Natl Acad Sci U S A, 2005 Sep 13;102(37):13272-7 Green NM et al., "Genome sequence of a serotype M28 strain of group a streptococcus: potential new insights into puerperal sepsis and bacterial disease specificity.", J Infect Dis, 2005 Sep 1;192(5):760-70 Schleheck D et al., "Omega-oxygenation of the alkyl sidechain of linear alkylbenzenesulfonate (LAS) surfactant in Parvibaculum lavamentivorans(T).", Arch Microbiol, 2005 Sep;183(6):369-77 Joardar V et al., "Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition.", J Bacteriol, 2005 Sep;187(18):6488-98 Kube M et al., "Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1.", Nat Biotechnol, 2005 Oct;23(10):1269-73 Nakagawa S et al., "Distribution, phylogenetic diversity and physiological characteristics of epsilon-Proteobacteria in a deep-sea hydrothermal field.", Environ Microbiol, 2005 Oct;7(10):1619-32 Médigue C et al., "Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.", Genome Res, 2005 Oct;15(10):1325-35 Giovannoni SJ et al., "Proteorhodopsin in the ubiquitous marine bacterium SAR11.", Nature, 2005 Nov 3;438(7064):82-5 Takeuchi F et al., "Whole-genome sequencing of staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species.", J Bacteriol, 2005 Nov;187(21):7292-308 Wu M et al., "Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901.", PLoS Genet, 2005 Nov;1(5):e65 Thomson NR et al., "The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation.", Genome Res, 2005 May;15(5):629-40 Cerdeño-Tárraga AM et al., "Extensive DNA inversions in the B. fragilis genome control variable gene expression.", Science, 2005 Mar 4;307(5714):1463-5 Altermann E et al., "Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM.", Proc Natl Acad Sci U S A, 2005 Mar 15;102(11):3906-12 Tauch A et al., "Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.", J Bacteriol, 2005 Jul;187(13):4671-82 Paulsen IT et al., "Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.", Nat Biotechnol, 2005 Jul;23(7):873-8 Seshadri R et al., "Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes.", Science, 2005 Jan 7;307(5706):105-8 Collins NE et al., "The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number.", Proc Natl Acad Sci U S A, 2005 Jan 18;102(3):838-43 Winsor GL et al., "Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation.", Nucleic Acids Res, 2005 Jan 1;33(Database issue):D338-43 Rabus R et al., "The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1.", Arch Microbiol, 2005 Jan;183(1):27-36 Seo JS et al., "The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4.", Nat Biotechnol, 2005 Jan;23(1):63-8 Ruby EG et al., "Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners.", Proc Natl Acad Sci U S A, 2005 Feb 22;102(8):3004-9 Larsson P et al., "The complete genome sequence of Francisella tularensis, the causative agent of tularemia.", Nat Genet, 2005 Feb;37(2):153-9 Prust C et al., "Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans.", Nat Biotechnol, 2005 Feb;23(2):195-200 Kühner S et al., "Substrate-dependent regulation of anaerobic degradation pathways for toluene and ethylbenzene in a denitrifying bacterium, strain EbN1.", J Bacteriol, 2005 Feb;187(4):1493-503 Kim HS et al., "Bacterial genome adaptation to niches: divergence of the potential virulence genes in three Burkholderia species of different survival strategies.", BMC Genomics, 2005 Dec 7;6:174 Mongodin EF et al., "The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea.", Proc Natl Acad Sci U S A, 2005 Dec 13;102(50):18147-52 Chain PS et al., "Whole-genome analyses of speciation events in pathogenic Brucellae.", Infect Immun, 2005 Dec;73(12):8353-61 Methé BA et al., "The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses.", Proc Natl Acad Sci U S A, 2005 Aug 2;102(31):10913-8 Giovannoni SJ et al., "Genome streamlining in a cosmopolitan oceanic bacterium.", Science, 2005 Aug 19;309(5738):1242-5 Ogata H et al., "The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite.", PLoS Biol, 2005 Aug;3(8):e248 Elias DA et al., "Global detection and characterization of hypothetical proteins in Shewanella oneidensis MR-1 using LC-MS based proteomics.", Proteomics, 2005 Aug;5(12):3120-30 Degnan PH et al., "Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects.", Genome Res, 2005 Aug;15(8):1023-33 Vasconcelos AT et al., "Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae.", J Bacteriol, 2005 Aug;187(16):5568-77 Gill SR et al., "Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain.", J Bacteriol, 2005 Apr;187(7):2426-38 Foster J et al., "The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode.", PLoS Biol, 2005 Apr;3(4):e121 Halling SM et al., "Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis.", J Bacteriol, 2005 Apr;187(8):2715-26 Lee BM et al., "The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice.", Nucleic Acids Res, 2005;33(2):577-86 Chiu CH et al., "The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen.", Nucleic Acids Res, 2005;33(5):1690-8 Yang F et al., "Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery.", Nucleic Acids Res, 2005;33(19):6445-58 Jeong H et al., "Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent.", Nucleic Acids Res, 2005;33(22):7066-73 Nierman WC et al., "Structural flexibility in the Burkholderia mallei genome.", Proc Natl Acad Sci U S A, 2004 Sep 28;101(39):14246-51 Holden MT et al., "Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei.", Proc Natl Acad Sci U S A, 2004 Sep 28;101(39):14240-5 Chien M et al., "The genomic sequence of the accidental pathogen Legionella pneumophila.", Science, 2004 Sep 24;305(5692):1966-8 Chain PS et al., "Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis.", Proc Natl Acad Sci U S A, 2004 Sep 21;101(38):13826-31 Leveau JH et al., "Phylogeny-function analysis of (meta)genomic libraries: screening for expression of ribosomal RNA genes by large-insert library fluorescent in situ hybridization (LIL-FISH).", Environ Microbiol, 2004 Sep;6(9):990-8 McLeod MP et al., "Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae.", J Bacteriol, 2004 Sep;186(17):5842-55 Schleheck D et al., "Parvibaculum lavamentivorans gen. nov., sp. nov., a novel heterotroph that initiates catabolism of linear alkylbenzenesulfonate.", Int J Syst Evol Microbiol, 2004 Sep;54(Pt 5):1489-1497 Kuwahara T et al., "Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation.", Proc Natl Acad Sci U S A, 2004 Oct 12;101(41):14919-24 Ishikawa J et al., "The complete genomic sequence of Nocardia farcinica IFM 10152.", Proc Natl Acad Sci U S A, 2004 Oct 12;101(41):14925-30 Hong SH et al., "The genome sequence of the capnophilic rumen bacterium Mannheimia succiniciproducens.", Nat Biotechnol, 2004 Oct;22(10):1275-81 Ward N et al., "Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath).", PLoS Biol, 2004 Oct;2(10):e303 Minion FC et al., "The genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis.", J Bacteriol, 2004 Nov;186(21):7123-33 Henne A et al., "The genome sequence of the extreme thermophile Thermus thermophilus.", Nat Biotechnol, 2004 May;22(5):547-53 Heidelberg JF et al., "The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.", Nat Biotechnol, 2004 May;22(5):554-9 van der Kaaij H et al., "L-alanine auxotrophy of Lactobacillus johnsonii as demonstrated by physiological, genomic, and gene complementation approaches.", Appl Environ Microbiol, 2004 Mar;70(3):1869-73 Alsmark CM et al., "The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae.", Proc Natl Acad Sci U S A, 2004 Jun 29;101(26):9716-21 Brüggemann H et al., "The complete genome sequence of Propionibacterium acnes, a commensal of human skin.", Science, 2004 Jul 30;305(5684):671-3 Schleheck D et al., "Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.", Appl Environ Microbiol, 2004 Jul;70(7):4053-63 Oshima K et al., "Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma.", Nat Genet, 2004 Jan;36(1):27-9 Pridmore RD et al., "The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533.", Proc Natl Acad Sci U S A, 2004 Feb 24;101(8):2512-7 Westberg J et al., "The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP).", Genome Res, 2004 Feb;14(2):221-7 Hou S et al., "Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy.", Proc Natl Acad Sci U S A, 2004 Dec 28;101(52):18036-41 Moran MA et al., "Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment.", Nature, 2004 Dec 16;432(7019):910-3 McClelland M et al., "Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid.", Nat Genet, 2004 Dec;36(12):1268-74 Stich RW et al., "Identification of a novel Anaplasma marginale appendage-associated protein that localizes with actin filaments during intraerythrocytic infection.", Infect Immun, 2004 Dec;72(12):7257-64 Jaffe JD et al., "The complete genome and proteome of Mycoplasma mobile.", Genome Res, 2004 Aug;14(8):1447-61 Monteiro-Vitorello CB et al., "The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli.", Mol Plant Microbe Interact, 2004 Aug;17(8):827-36 Horn M et al., "Illuminating the evolutionary history of chlamydiae.", Science, 2004 Apr 30;304(5671):728-30 Seshadri R et al., "Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes.", Proc Natl Acad Sci U S A, 2004 Apr 13;101(15):5646-51 Nascimento AL et al., "Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis.", J Bacteriol, 2004 Apr;186(7):2164-72 Dong W et al., "Parvibaculum lavamentivorans converts linear alkylbenzenesulphonate surfactant to sulphophenylcarboxylates, alpha,beta-unsaturated sulphophenylcarboxylates and sulphophenyldicarboxylates, which are degraded in communities.", J Appl Microbiol, 2004;96(3):630-40 Ueda K et al., "Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism.", Nucleic Acids Res, 2004;32(16):4937-44 Rey MW et al., "Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species.", Genome Biol, 2004;5(10):R77 Barbe V et al., "Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium.", Nucleic Acids Res, 2004;32(19):5766-79 Glöckner G et al., "Comparative analysis of the Borrelia garinii genome.", Nucleic Acids Res, 2004;32(20):6038-46 Takami H et al., "Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus.", Nucleic Acids Res, 2004;32(21):6292-303 Brazilian National Genome Project Consortium "The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability.", Proc Natl Acad Sci U S A, 2003 Sep 30;100(20):11660-5 Buell CR et al., "The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000.", Proc Natl Acad Sci U S A, 2003 Sep 2;100(18):10181-6 Nelson KE et al., "Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83.", J Bacteriol, 2003 Sep;185(18):5591-601 Papazisi L et al., "The complete genome sequence of the avian pathogen Mycoplasma gallisepticum strain R(low).", Microbiology (Reading), 2003 Sep;149(Pt 9):2307-2316 Kim YR et al., "Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients.", Infect Immun, 2003 Oct;71(10):5461-71 Scholle MD et al., "Sequencing and characterization of pBM400 from Bacillus megaterium QM B1551.", Appl Environ Microbiol, 2003 Nov;69(11):6888-98 Read TD et al., "The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria.", Nature, 2003 May 1;423(6935):81-6 Ivanova N et al., "Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis.", Nature, 2003 May 1;423(6935):87-91 Ikeda H et al., "Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis.", Nat Biotechnol, 2003 May;21(5):526-31 Chain P et al., "Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea.", J Bacteriol, 2003 May;185(9):2759-73 Takai K et al., "Deferribacter desulfuricans sp. nov., a novel sulfur-, nitrate- and arsenate-reducing thermophile isolated from a deep-sea hydrothermal vent.", Int J Syst Evol Microbiol, 2003 May;53(Pt 3):839-846 Paulsen IT et al., "Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis.", Science, 2003 Mar 28;299(5615):2071-4 Makino K et al., "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae.", Lancet, 2003 Mar 1;361(9359):743-9 Delihas N "Annotation and evolutionary relationships of a small regulatory RNA gene micF and its target ompF in Yersinia species.", BMC Microbiol, 2003 Jun 30;3:13 Suerbaum S et al., "The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus.", Proc Natl Acad Sci U S A, 2003 Jun 24;100(13):7901-6 Nishio Y et al., "Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens.", Genome Res, 2003 Jul;13(7):1572-9 van Ham RC et al., "Reductive genome evolution in Buchnera aphidicola.", Proc Natl Acad Sci U S A, 2003 Jan 21;100(2):581-6 Bruggemann H et al., "The genome sequence of Clostridium tetani, the causative agent of tetanus disease.", Proc Natl Acad Sci U S A, 2003 Feb 4;100(3):1316-21 Kleerebezem M et al., "Complete genome sequence of Lactobacillus plantarum WCFS1.", Proc Natl Acad Sci U S A, 2003 Feb 18;100(4):1990-5 Schleheck D et al., "Desulfonation and degradation of the disulfodiphenylethercarboxylates from linear alkyldiphenyletherdisulfonate surfactants.", Appl Environ Microbiol, 2003 Feb;69(2):938-44 Methé BA et al., "Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.", Science, 2003 Dec 12;302(5652):1967-9 Gil R et al., "The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes.", Proc Natl Acad Sci U S A, 2003 Aug 5;100(16):9388-93 Nakamura Y et al., "Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids.", DNA Res, 2003 Aug 31;10(4):137-45 Nakamura Y et al., "Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids (supplement).", DNA Res, 2003 Aug 31;10(4):181-201 Dufresne A et al., "Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome.", Proc Natl Acad Sci U S A, 2003 Aug 19;100(17):10020-5 Raoult D et al., "Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome.", Genome Res, 2003 Aug;13(8):1800-9 Seshadri R et al., "Complete genome sequence of the Q-fever pathogen Coxiella burnetii.", Proc Natl Acad Sci U S A, 2003 Apr 29;100(9):5455-60 Ren SX et al., "Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing.", Nature, 2003 Apr 24;422(6934):888-93 Read TD et al., "Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae.", Nucleic Acids Res, 2003 Apr 15;31(8):2134-47 Deng W et al., "Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18.", J Bacteriol, 2003 Apr;185(7):2330-7 Tettelin H et al., "Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae.", Proc Natl Acad Sci U S A, 2002 Sep 17;99(19):12391-6 Takami H et al., "Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments.", Nucleic Acids Res, 2002 Sep 15;30(18):3927-35 Schell MA et al., "The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.", Proc Natl Acad Sci U S A, 2002 Oct 29;99(22):14422-7 Ajdić D et al., "Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen.", Proc Natl Acad Sci U S A, 2002 Oct 29;99(22):14434-9 Jin Q et al., "Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157.", Nucleic Acids Res, 2002 Oct 15;30(20):4432-41 Camus JC et al., "Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv.", Microbiology (Reading), 2002 Oct;148(Pt 10):2967-2973 Akman L et al., "Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia.", Nat Genet, 2002 Nov;32(3):402-7 Heidelberg JF et al., "Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.", Nat Biotechnol, 2002 Nov;20(11):1118-23 Löhr CV et al., "Expression of Anaplasma marginale major surface protein 2 operon-associated proteins during mammalian and arthropod infection.", Infect Immun, 2002 Nov;70(11):6005-12 da Silva AC et al., "Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.", Nature, 2002 May 23;417(6887):459-63 Bao Q et al., "A complete sequence of the T. tengcongensis genome.", Genome Res, 2002 May;12(5):689-700 Tamas I et al., "50 million years of genomic stasis in endosymbiotic bacteria.", Science, 2002 Jun 28;296(5577):2376-9 DelVecchio VG et al., "The genome sequence of the facultative intracellular pathogen Brucella melitensis.", Proc Natl Acad Sci U S A, 2002 Jan 8;99(1):443-8 Salanoubat M et al., "Genome sequence of the plant pathogen Ralstonia solanacearum.", Nature, 2002 Jan 31;415(6871):497-502 Shimizu T et al., "Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater.", Proc Natl Acad Sci U S A, 2002 Jan 22;99(2):996-1001 Kaneko T et al., "Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110.", DNA Res, 2002 Dec 31;9(6):189-97 Kaneko T et al., "Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110 (supplement).", DNA Res, 2002 Dec 31;9(6):225-56 Sasaki Y et al., "The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans.", Nucleic Acids Res, 2002 Dec 1;30(23):5293-300 Nelson KE et al., "Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.", Environ Microbiol, 2002 Dec;4(12):799-808 Nakamura Y et al., "Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1.", DNA Res, 2002 Aug 31;9(4):123-30 Deng W et al., "Genome sequence of Yersinia pestis KIM.", J Bacteriol, 2002 Aug;184(16):4601-11 Kapatral V et al., "Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586.", J Bacteriol, 2002 Apr;184(7):2005-18 Ogata H et al., "Mechanisms of evolution in Rickettsia conorii and R. prowazekii.", Science, 2001 Sep 14;293(5537):2093-8 Omura S et al., "Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites.", Proc Natl Acad Sci U S A, 2001 Oct 9;98(21):12215-20 Parkhill J et al., "Genome sequence of Yersinia pestis, the causative agent of plague.", Nature, 2001 Oct 4;413(6855):523-7 Kaneko T et al., "Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120.", DNA Res, 2001 Oct 31;8(5):205-13; 227-53 McClelland M et al., "Complete genome sequence of Salmonella enterica serovar Typhimurium LT2.", Nature, 2001 Oct 25;413(6858):852-6 Hoskins J et al., "Genome of the bacterium Streptococcus pneumoniae strain R6.", J Bacteriol, 2001 Oct;183(19):5709-17 Bolotin A et al., "The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403.", Genome Res, 2001 May;11(5):731-53 Nierman WC et al., "Complete genome sequence of Caulobacter crescentus.", Proc Natl Acad Sci U S A, 2001 Mar 27;98(7):4136-41 May BJ et al., "Complete genomic sequence of Pasteurella multocida, Pm70.", Proc Natl Acad Sci U S A, 2001 Mar 13;98(6):3460-5 Hayashi T et al., "Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.", DNA Res, 2001 Feb 28;8(1):11-22 Kunnimalaiyaan M et al., "Analysis of the replicon region and identification of an rRNA operon on pBM400 of Bacillus megaterium QM B1551.", Mol Microbiol, 2001 Feb;39(4):1010-21 Lu J et al., "Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge.", FEMS Microbiol Lett, 2001 Dec 18;205(2):291-7 Wood DW et al., "The genome of the natural genetic engineer Agrobacterium tumefaciens C58.", Science, 2001 Dec 14;294(5550):2317-23 Goodner B et al., "Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58.", Science, 2001 Dec 14;294(5550):2323-8 Capela D et al., "Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021.", Proc Natl Acad Sci U S A, 2001 Aug 14;98(17):9877-82 Nölling J et al., "Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum.", J Bacteriol, 2001 Aug;183(16):4823-38 Kuroda M et al., "Whole genome sequencing of meticillin-resistant Staphylococcus aureus.", Lancet, 2001 Apr 21;357(9264):1225-40 Shigenobu S et al., "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS.", Nature, 2000 Sep 7;407(6800):81-6 Dandekar T et al., "Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.", Nucleic Acids Res, 2000 Sep 1;28(17):3278-88 Ogata H et al., "Selfish DNA in protein-coding genes of Rickettsia.", Science, 2000 Oct 13;290(5490):347-50 Glass JI et al., "The complete sequence of the mucosal pathogen Ureaplasma urealyticum.", Nature, 2000 Oct 12;407(6805):757-62 Ohnishi M et al., "Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655.", Syst Appl Microbiol, 2000 Oct;23(3):315-24 Yokoyama K et al., "Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak.", Gene, 2000 Nov 27;258(1-2):127-39 Takami H et al., "Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis.", Nucleic Acids Res, 2000 Nov 1;28(21):4317-31 Schleheck D et al., "An alpha-proteobacterium converts linear alkylbenzenesulfonate surfactants into sulfophenylcarboxylates and linear alkyldiphenyletherdisulfonate surfactants into sulfodiphenylethercarboxylates.", Appl Environ Microbiol, 2000 May;66(5):1911-6 Read TD et al., "Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.", Nucleic Acids Res, 2000 Mar 15;28(6):1397-406 Tettelin H et al., "Complete genome sequence of Neisseria meningitidis serogroup B strain MC58.", Science, 2000 Mar 10;287(5459):1809-15 Nasu H et al., "A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains.", J Clin Microbiol, 2000 Jun;38(6):2156-61 Viseshakul N et al., "Sequence and expression analysis of a surface antigen gene family of the rickettsia Anaplasma marginale.", Gene, 2000 Jul 25;253(1):45-53 Simpson AJ et al., "The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis.", Nature, 2000 Jul 13;406(6792):151-9 Parkhill J et al., "The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences.", Nature, 2000 Feb 10;403(6770):665-8 Kaneko T et al., "Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti.", DNA Res, 2000 Dec 31;7(6):331-8 Stover CK et al., "Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen.", Nature, 2000 Aug 31;406(6799):959-64 Heidelberg JF et al., "DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae.", Nature, 2000 Aug 3;406(6795):477-83 Nakasone K et al., "Characterization and comparative study of the rrn operons of alkaliphilic Bacillus halodurans C-125.", Extremophiles, 2000 Aug;4(4):209-14 Takami H et al., "Analysis of the genome of an alkaliphilic Bacillus strain from an industrial point of view.", Extremophiles, 2000 Apr;4(2):99-108 Makino K et al., "Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak.", Genes Genet Syst, 1999 Oct;74(5):227-39 White O et al., "Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1.", Science, 1999 Nov 19;286(5444):1571-7 Nelson KE et al., "Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.", Nature, 1999 May 27;399(6734):323-9 Takami H et al., "Replication origin region of the chromosome of alkaliphilic Bacillus halodurans C-125.", Biosci Biotechnol Biochem, 1999 Jun;63(6):1134-7 Takami H et al., "An improved physical and genetic map of the genome of alkaliphilic Bacillus sp. C-125.", Extremophiles, 1999 Jan;3(1):21-8 Takami H et al., "Sequencing of three lambda clones from the genome of alkaliphilic Bacillus sp. strain C-125.", Extremophiles, 1999 Jan;3(1):29-34 Takami H et al., "Sequence analysis of a 32-kb region including the major ribosomal protein gene clusters from alkaliphilic Bacillus sp. strain C-125.", Biosci Biotechnol Biochem, 1999 Feb;63(2):452-5 Takami H et al., "Genetic analysis of the chromosome of alkaliphilic Bacillus halodurans C-125.", Extremophiles, 1999 Aug;3(3):227-33 Kalman S et al., "Comparative genomes of Chlamydia pneumoniae and C. trachomatis.", Nat Genet, 1999 Apr;21(4):385-9 Takami H et al., "Reidentification of Facultatively Alkaliphilic Bacillus sp. C-125 to Bacillus halodurans.", Biosci Biotechnol Biochem, 1999;63(5):943-5 Stephens RS et al., "Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis.", Science, 1998 Oct 23;282(5389):754-9 Deckert G et al., "The complete genome of the hyperthermophilic bacterium Aquifex aeolicus.", Nature, 1998 Mar 26;392(6674):353-8 Cole ST et al., "Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.", Nature, 1998 Jun 11;393(6685):537-44 Fraser CM et al., "Complete genome sequence of Treponema pallidum, the syphilis spirochete.", Science, 1998 Jul 17;281(5375):375-88 Blattner FR et al., "The complete genome sequence of Escherichia coli K-12.", Science, 1997 Sep 5;277(5331):1453-62 Kunst F et al., "The complete genome sequence of the gram-positive bacterium Bacillus subtilis.", Nature, 1997 Nov 20;390(6657):249-56 Shirai T et al., "High-resolution crystal structure of M-protease: phylogeny aided analysis of the high-alkaline adaptation mechanism.", Protein Eng, 1997 Jun;10(6):627-34 Alleman AR et al., "Anaplasma marginale major surface protein 3 is encoded by a polymorphic, multigene family.", Infect Immun, 1997 Jan;65(1):156-63 Tomb JF et al., "The complete genome sequence of the gastric pathogen Helicobacter pylori.", Nature, 1997 Aug 7;388(6642):539-47 Himmelreich R et al., "Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae.", Nucleic Acids Res, 1996 Nov 15;24(22):4420-49 Tatusov RL et al., "Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli.", Curr Biol, 1996 Mar 1;6(3):279-91 Kaneko T et al., "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.", DNA Res, 1996 Jun 30;3(3):109-36 Fraser CM et al., "The minimal gene complement of Mycoplasma genitalium.", Science, 1995 Oct 20;270(5235):397-403 Fleischmann RD et al., "Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.", Science, 1995 Jul 28;269(5223):496-512 Kobayashi T et al., "Purification and properties of an alkaline protease from alkalophilic Bacillus sp. KSM-K16.", Appl Microbiol Biotechnol, 1995 Jul;43(3):473-81 Kaneko T et al., "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome.", DNA Res, 1995 Aug 31;2(4):153-66, 191-8 Palmer GH et al., "The immunoprotective Anaplasma marginale major surface protein 2 is encoded by a polymorphic multigene family.", Infect Immun, 1994 Sep;62(9):3808-16 McGarey DJ et al., "Putative adhesins of Anaplasma marginale: major surface polypeptides 1a and 1b.", Infect Immun, 1994 Oct;62(10):4594-601 Oberle SM et al., "Expression and immune recognition of the conserved MSP4 outer membrane protein of Anaplasma marginale.", Infect Immun, 1993 Dec;61(12):5245-51 Visser ES et al., "The Anaplasma marginale msp5 gene encodes a 19-kilodalton protein conserved in all recognized Anaplasma species.", Infect Immun, 1992 Dec;60(12):5139-44 Less...
Submission	Registration date: 30-Jan-2013 NCBI

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Transcript)	1314
Publications
PubMed	871
PMC	713

BioProject

Result Filters

Display Settings:

Send to:

Bacteria

Bacterial 5S Ribosomal RNA RefSeq Targeted Loci Project

Supplemental Content

Related information

LinkOut to external resources

Recent activity