Oryza sativa Japonica Group strain:Nipponbare (ID 245403) - BioProject

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Accession: PRJDB1747 ID: 245403

Oryza sativa Japonica Group strain:Nipponbare (Japanese rice)

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6498 additional projects are related by organism.

The Nipponbare genome assembly was updated by revising and validating the minimal tiling path of clones with the optical map for rice. More...

Accession	PRJDB1747
Data Type	Genome sequencing
Scope	Monoisolate
Organism	Oryza sativa Japonica Group[Taxonomy ID: 39947] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa Japonica Group
Publications	Kawahara Y et al., "Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data.", Rice (N Y), 2013 Feb 6;6(1):4 Sakai H et al., "Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics.", Plant Cell Physiol, 2013 Feb;54(2):e6
Submission	Registration date: 10-Oct-2015 National Institute of Agrobiological Sciences
Related Resources	The Rice Annotation Project Database (RAP-DB) The MSU Rice Genome Annotation Project Database
Relevance	Agricultural

Project Data:

Assembly	Level	Chrs	BioSample	Taxonomy
GCA_001433935.1	Chromosome	12	SAMD00000397	Oryza sativa Japonica Group

Related RefSeq Project

PRJNA122 : Whole genome RefSeq project for Oryza sativa japonica group

Supplemental Content

The Rice Annotation Project Database (RAP-DB)
The Rice Annotation Project Database (RAP-DB)
The MSU Rice Genome Annotation Project Database
The MSU Rice Genome Annotation Project Database

GOLD: Gp0093727 [Genomes On Line Database]
GOLD: Gp0093727
Genomes On Line Database

Oryza sativa Japonica Group strain:Nipponbare
Oryza sativa Japonica Group strain:Nipponbare
Update of genome assembly of Oryza sativa L. Nipponbare (Os-Nipponbare-Reference-IRGSP-1.0)

BioProject
Intracerebral periventricular calcifications
Intracerebral periventricular calcifications

MedGen
LOC4341377 [Oryza sativa Japonica Group]
LOC4341377 [Oryza sativa Japonica Group]
Gene ID:4341377

Gene
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidops...
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Arabidopsis thaliana]
Gene ID:3766658

Gene
trichohyalin [Arabidopsis thaliana]
trichohyalin [Arabidopsis thaliana]
Gene ID:820794

Gene

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