Vibrio sp. (ID 245885) - BioProject

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Accession: PRJNA245885 ID: 245885

Vibrio sp.

GenomeTrakr umbrella project for Vibrio parahaemolyticus

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This project is a component of the GenomeTrakr umbrella project

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22 additional projects are components of the GenomeTrakr umbrella project.

This umbrella project holds a set of data bioprojects, each representing a laboratory sequencing V. parahaemolyticus in collaboration with GenomeTrakr's open genomic epidemiology surveillance effort for the real-time monitoring of foodborne pathogens. Automated clustering and genotyping results for these data can be found at NCBI Pathogen Detection (link below).

Accession	PRJNA245885
Type	Umbrella project
Keyword	GMI
Publications	Published online: Timme R et al., "Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens", One Health Outlook, 2020;2(1)
Submission	Registration date: 30-Apr-2014 FDA/CFSAN
Related Resources	Whole Genome Sequencing (WGS) Fast Facts
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	24583
WGS master	1161
Genomic DNA	2
SRA Experiments	1293
Protein Sequences	1170874
Publications
PubMed	7
PMC	7
Other datasets
BioSample	1326
Assembly	1162

SRA Data Details

Parameter	Value
Data volume, Gbases	604
Data volume, Tbytes	0.33

Vibrio sp. encompasses the following 26 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Complete genome
Scaffolds
Contigs
SRA or Trace
No data links
Total

1
1
14
3
7
26

BioProject accession	Assembly level	Name	Title
PRJNA541971	Complete genome	Vibrio	GenomeTrakr Project: U.S. Food and Drug Administration - CFSAN (FDA Center for Food Safety...)
PRJNA616123	Contigs	Vibrio	Vibrio spp. (Virginia Division of Consolidated...)
PRJNA675644	No data links	Vibrio	GenomeTrakr Project: VT Dept. of Health, Vibrio (Vermont Department of Health...)
PRJNA758975	Contigs	Vibrio	Genome Trakr Project: Rhode Island Department of Health (Rhode Island State Health...)
PRJNA826895	Contigs	Vibrio	GenomeTrakr Project: Washington State Department of Health (GenomeTrakr Project: Washington...)

List all 26 'Genome sequencing' projects...

BioProject accession	Assembly level	Name	Title
PRJNA541971	Complete genome	Vibrio	GenomeTrakr Project: U.S. Food and Drug Administration - CFSAN (FDA Center for Food Safety...)
PRJNA616123	Contigs	Vibrio	Vibrio spp. (Virginia Division of Consolidated...)
PRJNA675644	No data links	Vibrio	GenomeTrakr Project: VT Dept. of Health, Vibrio (Vermont Department of Health...)
PRJNA758975	Contigs	Vibrio	Genome Trakr Project: Rhode Island Department of Health (Rhode Island State Health...)
PRJNA826895	Contigs	Vibrio	GenomeTrakr Project: Washington State Department of Health (GenomeTrakr Project: Washington...)
PRJNA828570	Contigs	Vibrio	GenomeTrakr Project: Vibrio species New York State Department of Health. Wadsworth Center (New York State GenomeTrakr)
PRJNA871130	Contigs	Vibrio	GenomeTrakr Project: Ohio ADDL Vibrio Genome sequencing and assembly (GenomeTrakr Project: Ohio...)
PRJNA1170999	No data links	Vibrio	Vibrio spp. SENASICA MX (SENASICA)
PRJNA245882	Scaffolds	Vibrio parahaemolyticus	Vibrio parahaemolyticus GenomeTrakr - US Food and Drug Administration, Center for Food Safety and Applied Nutrition (FDA/CFSAN)
PRJNA273159	Contigs	Vibrio parahaemolyticus	GenomeTrakr: CFSAN-GCSL, Dauphin Island (FDA Center for Food Safety...)
PRJNA616122	Contigs	Vibrio parahaemolyticus	Vibrio parahaemolyticus (Virginia Division of Consolidated...)
PRJNA706389	Contigs	Vibrio parahaemolyticus	GenomeTrakr Project: NJ DOH Public Health Laboratories (NJ DOH Public Health Laboratories...)
PRJNA731478	No data links	Vibrio parahaemolyticus	Genome Trakr Project: IN Department of Health (IN Department of Health Submission...)
PRJNA835092	SRA or Trace	Vibrio parahaemolyticus	Vibrio parahaemolyticus Raw sequence reads (Nevada State Public Health...)
PRJNA935382	Contigs	Vibrio parahaemolyticus	GenomeTrakr Project: NJ Department of Agriculture, Animal Health Diagnostic Laboratory (New Jersey Department of...)
PRJNA1003914	Contigs	Vibrio parahaemolyticus	Vibrio parahaemolyticus SENASICA MX (SENASICA)
PRJNA1077923	Contigs	Vibrio parahaemolyticus	V. parahaemolyticus food and/or environmental isolates (KY Dept. for Public Health...)
PRJNA545126	No data links	Vibrio sp.	GenomeTrakr Project: U.S. Food and Drug Administration - CFSAN (FDA Center for Food Safety...)
PRJNA601739	No data links	Vibrio sp.	GenomeTrakr Project: Texas Department of State Health Services (FDA Center for Food Safety...)
PRJNA602537	No data links	Vibrio sp.	GenomeTrakr Project: California Department of Public Health (FDA Center for Food Safety...)
PRJNA984753	SRA or Trace	Vibrio sp.	GenomeTrakr Project: AZ State Public Health, TGen North -- Vibrio sp. (AZ GenomeTrakr submission...)
PRJNA1022065	Contigs	Vibrio sp.	GenomeTrakr Project: NH Public Health Labs (New Hampshire Public Health...)
PRJNA1136880	Contigs	Vibrio sp.	NOAA Vibrio sp. Genome sequencing and assembly (National Oceanic and Atmospheric...)
PRJNA1168891	SRA or Trace	Vibrio sp.	Vibrio sp. GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center (New York State GenomeTrakr)
PRJNA1111066	No data links	Vibrio species	GenomeTrakr Project: New York State Department of Agriculture and Markets (NYAG) (GenomeTrakr Project: New...)
PRJNA992012	Contigs	Vibrio spp.	GenomeTrakr Project: Vibrio spp., Missouri State Public Health Laboratory (Missouri State Public Health...)

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GenomeTrakr umbrella project for Vibrio parahaemolyticus

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