ID 258402 - BioProject

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Accession: PRJNA258402 ID: 258402

Cronobacter sp.

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This project is a component of the GenomeTrakr umbrella project

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22 additional projects are components of the GenomeTrakr umbrella project.

This umbrella project holds a set of data bioprojects, each representing a laboratory sequencing Cronobacter species in collaboration with GenomeTrakr's open genomic epidemiology surveillance effort for the real-time monitoring of foodborne pathogens. Automated clustering and genotyping results for these data can be found at NCBI Pathogen Detection (link below).

Accession	PRJNA258402
Type	Umbrella project
Keyword	GMI
Publications	Timme RE et al., "Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens.", One Health Outlook, 2020;2(1):20
Submission	Registration date: 18-Aug-2014 FDA/CFSAN
NCBI Links	NCBI Pathogen Detection
Related Resources	FDA Whole Genome Sequencing Program (WGS) NCBI Pathogen FTP Whole Genome Sequencing (WGS) Fast Facts FDA GenomeTrakr Video
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	21339
WGS master	1438
Genomic DNA	158
SRA Experiments	1706
Protein Sequences	1015011
Publications
PubMed	10
PMC	10
Other datasets
BioSample	2046
Assembly	1440

SRA Data Details

Parameter	Value
Data volume, Gbases	674
Data volume, Tbytes	0.39

This project encompasses the following 7 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Complete genome
Scaffolds
Contigs
SRA or Trace
No data links
Total

1
1
3
1
1
7

BioProject accession	Assembly level	Name	Title
PRJNA258403	Complete genome	Cronobacter	Cronobacter GenomeTrakr Project: FDA-CFSAN (FDA/CFSAN)
PRJNA822620	Contigs	Cronobacter	GenomeTrakr Project: Cronobacter spp., Missouri State Public Health Laboratory (Missouri State Public Health...)
PRJNA826495	Contigs	Cronobacter	GenomeTrakr Project: West Virginia Department of Agriculture (Megan Young)
PRJNA727202	SRA or Trace	Cronobacter sakazakii	GenomeTrakr project: Maryland Department of Health and Mental Hygiene (FDA Center for Food Safety...)
PRJNA818319	Contigs	Cronobacter sp	Cronobacter sp (Minnesota Department of Health)

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Cronobacter sp.

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