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Accession: PRJNA289613 ID: 289613

mouse gut metagenome

Genome sequencing and assembly of a defined mouse intestinal bacterial community

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This project is a component of the The Lactobacillus genus, a use case for Bactopia.
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216 additional projects are components of the The Lactobacillus genus, a use case for Bactopia..
Gnotobiotic mice colonized with known bacterial communities are extensively used as models to study the role of the gut microbiota and its association with diseases. More...
AccessionPRJNA289613
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismmouse gut metagenome[Taxonomy ID: 410661]
unclassified sequences; metagenomes; organismal metagenomes; mouse gut metagenome
PublicationsGarzetti D et al., "High-Quality Whole-Genome Sequences of the Oligo-Mouse-Microbiota Bacterial Community.", Genome Announc, 2017 Oct 19;5(42)
SubmissionRegistration date: 19-Jul-2017
Max von Pettenkofer-Institut
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)77
WGS master6
Genomic DNA6
SRA Experiments13
Protein Sequences39425
Publications
PubMed1
PMC1
Other datasets
BioSample13
Assembly12
Assembly details:
SRA Data Details
ParameterValue
Data volume, Gbases16
Data volume, Mbytes31756

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  • mouse gut metagenome
    mouse gut metagenome
    Genome sequencing and assembly of a defined mouse intestinal bacterial community
    BioProject
  • Lactobacillus sequencing project
    Lactobacillus sequencing project
    Whole genome sequencing of isolates from Lactobacillus acidophilus and closely related organisms
    BioProject

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