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Accession: PRJNA296704 ID: 296704

Campylobacter jejuni

GenomeTrakr Project: Texas Department of State Health Services

See Genome Information for Campylobacter jejuni
Whole genome sequencing of cultured Campylobacter jejuni as part of the US Food and Drug Administration's WGS surveillance effort for the rapid detection of foodborne illness outbreaks.
AccessionPRJNA296704
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismCampylobacter jejuni[Taxonomy ID: 197]
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter jejuni
SubmissionRegistration date: 23-Apr-2019
US Food and Drug Administration
Related Resources
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)256
SRA Experiments323
Other datasets
BioSample323
Assembly256
Assembly details:
Assembly levelNumber of Assemblies
2
254
256
AssemblyLevelWGSBioSampleInfraspecies IdTaxonomy
GCA_005065685.1ContigAABXWJ000000000SAMN08287247
TX-ACF1702611
GCA_005060885.1ContigAABXOG000000000SAMN08397433
TX-ACF1800022
GCA_005060605.1ContigAABXNQ000000000SAMN08744613
TXACF1800415
GCA_005029935.1ContigAABWDH000000000SAMN08397434
TX-ACF1800021
GCA_005017175.1ContigAABVIB000000000SAMN07965089
TX-ACF1702294C
GCA_004958665.1ContigAABRAP000000000SAMN07222689
TX-ACF1701427
GCA_004953845.1ContigAABQZB000000000SAMN07185538
TX-ACF1701365
GCA_004953665.1ContigAABQYJ000000000SAMN07163122
TX-ACF1701100P3
GCA_004950225.1ContigAABQPN000000000SAMN06760673
TX-ACF1700843P2
GCA_004968925.1ContigAABRPK000000000SAMN07484761
TX-ACF1701983C
GCA_005257045.1ContigAACKWM000000000SAMN07222690
TX-ACF1701426
GCA_005255845.1ContigAACKUA000000000SAMN06198233
TX-ACF1602212-1
GCA_005275195.1ContigAACLXP000000000SAMN07163124
TX-ACF1701226
GCA_005268635.1ContigAACMGV000000000SAMN11539507
TTU_564
GCA_005176075.1ContigAACFQJ000000000SAMN06198234
TX-ACF1602211-1
GCA_005175085.1ContigAACFNZ000000000SAMN07163123
TX-ACF1701100P1
GCA_005173025.1ContigAACFKE000000000SAMN06760674
TX-ACF1700843P1
GCA_005210245.1ContigAACIET000000000SAMN07222691
TX-ACF1701415
GCA_005190615.1ContigAACGSY000000000SAMN06760672
TX-ACF1700933
GCA_005336725.1ContigAACQPK000000000SAMN09242521
TTU_189
GCA_005336985.1ContigAACQPI000000000SAMN09242594
TTU_185
GCA_005335575.1ContigAACQPH000000000SAMN09242517
TTU_187
GCA_005335505.1ContigAACQPF000000000SAMN09242603
TTU_184
GCA_005335405.1ContigAACQPC000000000SAMN09242503
TTU_186
GCA_005335445.1ContigAACQPG000000000SAMN09242601
TTU_183
GCA_010219055.1ContigAANHIF000000000SAMN13866916
PNUSAC014965
GCA_010218995.1ContigAANHIE000000000SAMN13866919
PNUSAC014962
GCA_010218815.1ContigAANHHW000000000SAMN13866917
PNUSAC014964
GCA_010266535.1ContigAANICE000000000SAMN13391865
PNUSAC013717
GCA_010266115.1ContigAANICN000000000SAMN13391866
PNUSAC013718
GCA_010274095.1ContigAANIQQ000000000SAMN13866915
PNUSAC014966
GCA_010272745.1ContigAANIOA000000000SAMN13866918
PNUSAC014963
GCA_008371535.1ContigAAKGZH000000000SAMN12715341
TTU_588
GCA_007891605.1ContigAAJCUA000000000SAMN12476130
TTU_614
GCA_007886505.1ContigAAJCIL000000000SAMN12421810
TTU_606
GCA_018476745.1ScaffoldJAHCUB000000000SAMN12421837
TTU_604
GCA_018476765.1ContigJAHCUA000000000SAMN12715313
TTU_618
GCA_004804635.1ContigAABGXB000000000SAMN09951439
TXACF1801198
GCA_004804695.1ContigAABGWZ000000000SAMN09980249
TXACF1801545
GCA_005085185.1ContigAABZGS000000000SAMN04148282
TX-ACB1500830
GCA_005085585.1ContigAABZHK000000000SAMN04148283
TX-ACB1500832
GCA_005085545.1ContigAABZHI000000000SAMN04148280
TX-ACB1500827
GCA_005086585.1ContigAABZJK000000000SAMN04148281
TX-ACB1500828
GCA_005096455.1ContigAACACW000000000SAMN04148261
TX-ACB1500692
GCA_005096895.1ContigAACACY000000000SAMN04148263
TX-ACB1500717
GCA_005097155.1ContigAACADH000000000SAMN04148257
TX-ACB1500474
GCA_005097285.1ContigAACADR000000000SAMN04148268
TX-ACB1500768
GCA_005098105.1ContigAACAFI000000000SAMN04148271
TX-ACB1500773
GCA_005104165.1ContigAACARA000000000SAMN05371148
TX-ACB1400016
GCA_005104105.1ContigAACARC000000000SAMN05371149
TX-ACB1401020
GCA_005104145.1ContigAACAQY000000000SAMN05371146
TX-ACB1303596
GCA_005104125.1ContigAACARB000000000SAMN05371147
TX-ACB1303610
GCA_005104045.1ContigAACAQZ000000000SAMN05371145
TX-ACB1303352
GCA_005104025.1ContigAACAQV000000000SAMN05371144
TX-ACB1302708
GCA_005104005.1ContigAACAQT000000000SAMN05371142
TX-ACB1302265
GCA_005103965.1ContigAACAQS000000000SAMN05371138
TX-ACB1301168
GCA_005103985.1ContigAACAQU000000000SAMN05371139
TX-ACB1301169
GCA_005103885.1ContigAACAQR000000000SAMN05371137
TX-ACB1300711
GCA_005104725.1ContigAACASV000000000SAMN05416294
CVM17542
GCA_005104225.1ContigAACAQW000000000SAMN05371150
TX-ACB1401225
GCA_005105045.1ContigAACASX000000000SAMN05371152
TX-ACB1401525
GCA_005104585.1ContigAACASW000000000SAMN05371156
TX-ACB1403333
GCA_005104385.1ContigAACAST000000000SAMN05416299
CVM18099
GCA_005105105.1ContigAACATA000000000SAMN05371157
TX-ACB1403514
GCA_005105805.1ContigAACATT000000000SAMN05416307
CVM18178
GCA_005105965.1ContigAACATY000000000SAMN05416306
CVM18177
GCA_005106085.1ContigAACATW000000000SAMN05416304
CVM18175
GCA_005106205.1ContigAACAVY000000000SAMN05416320
CVM18695
GCA_005106805.1ContigAACAWX000000000SAMN05603795
CVM18816
GCA_005106785.1ContigAACATX000000000SAMN05603797
CVM18814
GCA_005106765.1ContigAACATZ000000000SAMN05603796
CVM18815
GCA_005106705.1ContigAACAWV000000000SAMN05603803
CVM18701-1
GCA_005106685.1ContigAACAWW000000000SAMN05603800
CVM18705
GCA_005106665.1ContigAACATV000000000SAMN05603801
CVM18703
GCA_005106485.1ContigAACAWU000000000SAMN05603798
CVM18813
GCA_005106365.1ContigAACAVW000000000SAMN05416314
CVM18689-1
GCA_005106905.1ContigAACAVH000000000SAMN05603788
CVM19779
GCA_005107305.1ContigAACAXT000000000SAMN05603784
CVM20062
GCA_005107315.1ContigAACAXQ000000000SAMN05603782
CVM20064-1
GCA_005107265.1ContigAACAXO000000000SAMN05603779
CVM20067
GCA_005107225.1ContigAACAXU000000000SAMN05603781
CVM20065
GCA_005107245.1ContigAACAXS000000000SAMN05603783
CVM20063
GCA_005107205.1ContigAACAXR000000000SAMN05603777
CVM20069
GCA_005107185.1ContigAACAXN000000000SAMN05603776
CVM20070
GCA_005107165.1ContigAACAXP000000000SAMN05603821
CVM20072
GCA_005107965.1ContigAACAVD000000000SAMN05603790
CVM19760
GCA_005107975.1ContigAACAXG000000000SAMN05603787
CVM19792
GCA_005108105.1ContigAACAVE000000000SAMN05603792
CVM18820
GCA_005108725.1ContigAACAZM000000000SAMN05603818
CVM20075
GCA_005108705.1ContigAACAZL000000000SAMN05603817
CVM20083
GCA_005108685.1ContigAACAZI000000000SAMN05603814
CVM20089
GCA_005108645.1ContigAACAZN000000000SAMN05603816
CVM20085
GCA_005108585.1ContigAACAZJ000000000SAMN05603810
CVM20093
GCA_005108605.1ContigAACAZF000000000SAMN05603809
CVM20095
GCA_005108545.1ContigAACAZK000000000SAMN05603811
CVM20092
GCA_005109725.1ContigAACBBN000000000SAMN05603828
CVM20809
GCA_005109705.1ContigAACBBR000000000SAMN05603832
CVM20803
GCA_005109685.1ContigAACBBQ000000000SAMN05603827
CVM20810
GCA_005109645.1ContigAACBBM000000000SAMN05603849
CVM21049
GCA_005109625.1ContigAACBBK000000000SAMN05603845
CVM20105
GCA_005109585.1ContigAACBBP000000000SAMN05603825
CVM20812
GCA_005109565.1ContigAACBBL000000000SAMN05603846
CVM20104
GCA_005109545.1ContigAACBBI000000000SAMN05603844
CVM20106
GCA_005109525.1ContigAACBBE000000000SAMN05603836
CVM20797
GCA_005109485.1ContigAACBBH000000000SAMN05603837
CVM20796
GCA_005109465.1ContigAACBBG000000000SAMN05603843
CVM20116
GCA_005109365.1ContigAACBBF000000000SAMN05603838
CVM20605
GCA_005016495.1ContigAABVDI000000000SAMN07461438
TX-ACF1701600
GCA_004934585.1ContigAABPNZ000000000SAMN05371140
TX-ACB1301663
GCA_004935415.1ContigAABPPN000000000SAMN05416301
CVM18107
GCA_004935395.1ContigAABPPO000000000SAMN05371154
TX-ACB1402555
GCA_004935375.1ContigAABPPQ000000000SAMN05416305
CVM18176
GCA_004935355.1ContigAABPPI000000000SAMN05416297
CVM18097
GCA_004935315.1ContigAABPPL000000000SAMN05416300
CVM18101
GCA_004935215.1ContigAABPPM000000000SAMN05416302
CVM18108
GCA_004935515.1ContigAABPQM000000000SAMN05416313
CVM18688
GCA_004935905.1ContigAABPRO000000000SAMN05603775
CVM20071
GCA_004935995.1ContigAABPPV000000000SAMN05416310
CVM18181
GCA_004936555.1ContigAABPRI000000000SAMN05603791
CVM19759
GCA_004936335.1ContigAABPQH000000000SAMN05603802
CVM18702-1
GCA_004936255.1ContigAABPQG000000000SAMN05603799
CVM18707-1
GCA_004936235.1ContigAABPRQ000000000SAMN05603780
CVM20066
GCA_004936455.1ContigAABPRK000000000SAMN05603786
CVM20057
GCA_004925315.1ContigAABOZJ000000000SAMN04148256
TX-ACB1500472
GCA_004928235.1ContigAABPCE000000000SAMN04148273
TX-ACB1500776
GCA_004928135.1ContigAABPCA000000000SAMN04148272
TX-ACB1500775
GCA_004928095.1ContigAABPBY000000000SAMN04148269
TX-ACB1500769
GCA_004927095.1ContigAABOZY000000000SAMN04148260
TX-ACB1500688
GCA_004926955.1ContigAABOZM000000000SAMN04148262
TX-ACB1500693
GCA_004926915.1ContigAABOZN000000000SAMN04148264
TX-ACB1500718
GCA_004928055.1ContigAABPBX000000000SAMN04148270
TX-ACB1500770
GCA_004937905.1ContigAABPTM000000000SAMN05603812
CVM20091
GCA_004938485.1ContigAABPUX000000000SAMN05603831
CVM20805
GCA_004938465.1ContigAABPVD000000000SAMN05603834
CVM20800
GCA_004938435.1ContigAABPUU000000000SAMN05603824
CVM21046
GCA_004938415.1ContigAABPUZ000000000SAMN05603833
CVM20802
GCA_004938395.1ContigAABPUR000000000SAMN05603829
CVM20808
GCA_004938375.1ContigAABPUW000000000SAMN05603830
CVM20806
GCA_004938335.1ContigAABPUV000000000SAMN05603848
CVM21057
GCA_004948945.1ContigAABQTC000000000SAMN06688987
TX-ACF1700702J
GCA_004945885.1ContigAABQIS000000000SAMN06624281
TX-ACF1700589J
GCA_004993345.1ContigAABTLP000000000SAMN08291644
TX-ACF1702702C
GCA_005253615.1ContigAACKPD000000000SAMN05416317
CVM18692
GCA_005253705.1ContigAACKPB000000000SAMN05416319
CVM18694-1
GCA_005253685.1ContigAACKPC000000000SAMN05416311
CVM18182
GCA_005221125.1ContigAACIWE000000000SAMN11507360
TTU_483
GCA_005221145.1ContigAACIWC000000000SAMN11507310
TTU_477
GCA_005221105.1ContigAACIWD000000000SAMN11507344
TTU_501
GCA_005216705.1ContigAACIPW000000000SAMN11507373
TTU_505
GCA_005216685.1ContigAACIPV000000000SAMN11507311
TTU_509
GCA_005299245.1ContigAACNXP000000000SAMN05603807
CVM20097
GCA_005279455.1ContigAACMNM000000000SAMN11581024
TXACF1900851
GCA_005123425.1ContigAACCNC000000000SAMN11491097
TTU_508
GCA_005123545.1ContigAACCNE000000000SAMN11491098
TTU_504
GCA_005121905.1ContigAACCDI000000000SAMN11322362
TXACF1900405
GCA_005126305.1ContigAACCQV000000000SAMN11507361
TTU_488
GCA_005126285.1ContigAACCQX000000000SAMN11507340
TTU_485
GCA_005126245.1ContigAACCQY000000000SAMN11507372
TTU_497
GCA_005136545.1ContigAACCZO000000000SAMN04148258
TX-ACB1500686
GCA_005136565.1ContigAACCZT000000000SAMN04148259
TX-ACB1500687
GCA_005137705.1ContigAACDBX000000000SAMN04148277
TX-ACB1500822
GCA_005137665.1ContigAACDBU000000000SAMN04148278
TX-ACB1500825
GCA_005137645.1ContigAACDBO000000000SAMN04148276
TX-ACB1500821
GCA_005131745.1ContigAACCNK000000000SAMN11491108
TTU_478
GCA_005131845.1ContigAACCNI000000000SAMN11491103
TTU_513
GCA_005129905.1ContigAACCND000000000SAMN11491099
TTU_493
GCA_005163785.1ContigAACEUT000000000SAMN05416312
CVM18687
GCA_005164645.1ContigAACEQU000000000SAMN05603841
CVM20602
GCA_005164515.1ContigAACEQW000000000SAMN05603819
CVM20074
GCA_005160475.1ContigAACEOX000000000SAMN05603820
CVM20073
GCA_005161185.1ContigAACEPC000000000SAMN05603794
CVM18818
GCA_005161265.1ContigAACEOL000000000SAMN05416318
CVM18693
GCA_005159305.1ContigAACELL000000000SAMN05603789
CVM19778-2
GCA_005154225.1ContigAACEGC000000000SAMN05603839
CVM20604
GCA_005154515.1ContigAACEJP000000000SAMN05603806
CVM20098
GCA_005154855.1ContigAACEDI000000000SAMN05603826
CVM20811
GCA_005156545.1ContigAACEGJ000000000SAMN05603805
CVM20103
GCA_005157185.1ContigAACEHC000000000SAMN05603813
CVM20090
GCA_005157165.1ContigAACEHE000000000SAMN05416322
CVM18700
GCA_005157085.1ContigAACEHI000000000SAMN05603842
CVM20601
GCA_005156985.1ContigAACEHD000000000SAMN05603793
CVM18819
GCA_005156865.1ContigAACEGT000000000SAMN05603785
CVM20059
GCA_005158445.1ContigAACEJO000000000SAMN05416321
CVM18696
GCA_005157525.1ContigAACEHT000000000SAMN05416308
CVM18179
GCA_005154005.1ContigAACEEF000000000SAMN05603778
CVM20068
GCA_005143775.1ContigAACDNM000000000SAMN05371151
TX-ACB1401235
GCA_005143745.1ContigAACDNO000000000SAMN05371143
TX-ACB1302266
GCA_005143665.1ContigAACDNK000000000SAMN05371141
TX-ACB1302070
GCA_005143645.1ContigAACDNL000000000SAMN05371136
TX-ACB1300232
GCA_005144325.1ContigAACDOU000000000SAMN05416296
CVM18094
GCA_005144305.1ContigAACDOS000000000SAMN05416295
CVM17543
GCA_005144265.1ContigAACDOW000000000SAMN05416303
CVM18109
GCA_005144385.1ContigAACDOV000000000SAMN05416298
CVM18098
GCA_005200995.1ContigAACHLG000000000SAMN05371158
TX-ACB1403865
GCA_005200775.1ContigAACHKW000000000SAMN05371155
TX-ACB1402751
GCA_005201495.1ContigAACHMC000000000SAMN05416316
CVM18691
GCA_005201455.1ContigAACHMQ000000000SAMN05371153
TX-ACB1401909
GCA_005202615.1ContigAACHOU000000000SAMN05416315
CVM18690
GCA_005192735.1ContigAACGXL000000000SAMN07461442
TX-ACF1701877
GCA_005213555.1ContigAACIJN000000000SAMN11491104
TTU_490
GCA_005185705.1ContigAACGIJ000000000SAMN07965087
TX-ACF1702294J
GCA_005172505.1ContigAACFKQ000000000SAMN05603815
CVM20088
GCA_005174325.1ContigAACFME000000000SAMN06312038
TX-ACF1700087
GCA_005166005.1ContigAACEPA000000000SAMN05603835
CVM20798
GCA_005165865.1ContigAACEOT000000000SAMN05416309
CVM18180
GCA_005337025.1ContigAACQPL000000000SAMN09242546
TTU_191
GCA_005335625.1ContigAACQPJ000000000SAMN09242540
TTU_190
GCA_005336875.1ContigAACQPO000000000SAMN09242543
TTU_192
GCA_005336965.1ContigAACQPQ000000000SAMN09242608
TTU_180
GCA_005336405.1ContigAACQPN000000000SAMN09242523
TTU_188
GCA_005336365.1ContigAACQPA000000000SAMN09242607
TTU_181
GCA_005336205.1ContigAACQPE000000000SAMN09242617
TTU_179
GCA_007891345.1ContigAAJCTJ000000000SAMN12476111
TTU_615
GCA_007891485.1ContigAAJCTN000000000SAMN12476133
TTU_612
GCA_008585705.1ContigAAKUWT000000000SAMN12715303
TTU_581
GCA_008371575.1ContigAAKGZM000000000SAMN12715326
TTU_608
GCA_009375315.1ContigAAMOJB000000000SAMN13087570
PNUSAC012859
GCA_008996535.1ContigAALSXR000000000SAMN13002652
PNUSAC012400
GCA_010305605.1ContigAANKRT000000000SAMN13516372
PNUSAC014056
GCA_010281885.1ContigAANJEO000000000SAMN13389404
PNUSAC013716
GCA_010308365.1ContigAANLAY000000000SAMN13866913
PNUSAC014968
GCA_010308245.1ContigAANLAR000000000SAMN13866921
PNUSAC014973
GCA_010307245.1ContigAANKYX000000000SAMN13866914
PNUSAC014967
GCA_010306845.1ContigAANKYG000000000SAMN13866925
PNUSAC014974
GCA_010306745.1ContigAANKXZ000000000SAMN13866910
PNUSAC014971
GCA_010306765.1ContigAANKYA000000000SAMN13866909
PNUSAC014972
GCA_010306685.1ContigAANKYD000000000SAMN13866912
PNUSAC014969
GCA_010306545.1ContigAANKXN000000000SAMN13866911
PNUSAC014970
GCA_010350065.1ContigAANNYG000000000SAMN13389406
PNUSAC013715
GCA_033348295.1ContigABOOVE000000000SAMN38094247
PNUSAC040600
GCA_028613555.1ContigABKPPJ000000000SAMN33274013
PNUSAC033459
GCA_025845215.1ContigABIZPD000000000SAMN31430712
PNUSAC031625
GCA_018476665.1ContigJAHCUD000000000SAMN11491102
TTU_487
GCA_018476705.2ScaffoldJAHCUC000000000SAMN11507371
TTU_481
GCA_019931555.1ContigABCJGN000000000SAMN21391396
PNUSAC023644
GCA_020201875.1ContigABCSLN000000000SAMN21855460
PNUSAC024079
GCA_020431005.1ContigABDERC000000000SAMN22211737
PNUSAC024274
GCA_007863105.1ContigAAJAWV000000000SAMN12390222
TTU_579
GCA_007866065.1ContigAAJAWU000000000SAMN12390223
TTU_574
GCA_018476685.1ContigJAHCUE000000000SAMN12390224
TTU_572
GCA_016599075.1ContigJAENKT000000000SAMN12476126
TTU_621
GCA_016599035.1ContigJAENKU000000000SAMN12715343
TTU_619
GCA_016599045.1ContigJAENKV000000000SAMN13569984
TTU_617
GCA_005220305.1ContigAACITY000000000SAMN11491062
TTU_480
GCA_005123765.1ContigAACCMW000000000SAMN11491101
TTU_479
GCA_008586085.1ContigAAKUXD000000000SAMN12715356
TTU_594
GCA_008586045.1ContigAAKUXE000000000SAMN12715340
TTU_593
GCA_008586025.1ContigAAKUXB000000000SAMN12715329
TTU_598
GCA_008586005.1ContigAAKUXA000000000SAMN12715333
TTU_597
GCA_008585985.1ContigAAKUXC000000000SAMN12715336
TTU_596
GCA_007891385.1ContigAAJCTC000000000SAMN12476124
TTU_626
GCA_010347645.1ContigAANNTX000000000SAMN13516228
TTU_641
GCA_010347385.1ContigAANNTQ000000000SAMN13516229
TTU_638
GCA_010347305.1ContigAANNTG000000000SAMN13940162
PNUSAC014058
GCA_010345785.1ContigAANNSH000000000SAMN13516507
PNUSAC014057
GCA_033015655.1ContigABOHWG000000000SAMN37943918
PNUSAC040403
SRA Data Details
ParameterValue
Data volume, Gbases81
Data volume, Mbytes44850

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