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Accession: PRJNA298359 ID: 298359

Salmonella enterica

GenomeTrakr Project: Florida Department of Agriculture

See Genome Information for Salmonella enterica
Whole genome sequencing of cultured Salmonella as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.
AccessionPRJNA298359
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismSalmonella enterica[Taxonomy ID: 28901]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica
SubmissionRegistration date: 20-Feb-2019
US Food and Drug Administration
Related Resources
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)209
SRA Experiments291
Other datasets
BioSample285
Assembly209
Assembly details:
Assembly levelNumber of Assemblies
209
209
AssemblyLevelWGSBioSampleInfraspecies IdTaxonomy
GCA_007950805.2ContigAAJGZD000000000SAMN12497050
Burnett-UNAM-V7
GCA_014949265.1ContigAAWOHX000000000SAMN16481060
Burnett-UAB-RT032
GCA_014949245.1ContigAAWOHV000000000SAMN16481075
Burnett-UAB-RT028
GCA_014949305.1ContigAAWOIB000000000SAMN16481073
Burnett-UAB-RT030
GCA_014949625.1ContigAAWOIK000000000SAMN16481010
Burnett-UAB-RT033
GCA_014950205.1ContigAAWOIW000000000SAMN16480858
Burnett-UABPS039
GCA_014949845.1ContigAAWOIY000000000SAMN16480832
Burnett-UABPS047
GCA_015000445.1ContigAAWRDU000000000SAMN16560608
Burnett-UAB-RT029
GCA_016259045.1ContigAAYCKI000000000SAMN12230460
Burnett-UNAM-V14
GCA_016258895.1ContigAAYCKL000000000SAMN12230461
Burnett-UNAM-V15
GCA_016261285.1ContigAAYCOG000000000SAMN12108709
Burnett-SPE74
GCA_016273985.1ContigAAYDNI000000000SAMN10734828
FLAG-47317
GCA_016167305.1ContigAAXZCO000000000SAMN15430563
PUCV75
GCA_014950305.2ContigAAWOJI000000000SAMN16480856
Burnett-UABPS015
GCA_014950145.2ContigAAWOJF000000000SAMN16480835
Burnett-UABPS023
GCA_014949525.2ContigAAWOIJ000000000SAMN16481011
Burnett-UABPS008
GCA_014949225.2ContigAAWOIV000000000SAMN16480860
Burnett-UABPS031
GCA_014949365.2ContigAAWOIF000000000SAMN16481007
Burnett-UABPS001
GCA_014949785.2ContigAAWOIX000000000SAMN16480834
Burnett-UABPS004
GCA_020694705.1ContigABDOXT000000000SAMN22777271
-
GCA_020694625.1ContigABDOXR000000000SAMN22777261
-
GCA_020694605.1ContigABDOXS000000000SAMN22777270
-
GCA_020694585.1ContigABDOXQ000000000SAMN22777269
-
GCA_020694565.1ContigABDOXP000000000SAMN22777268
-
GCA_020694545.1ContigABDOXM000000000SAMN22777265
-
GCA_020694505.1ContigABDOXO000000000SAMN22777267
-
GCA_020694525.1ContigABDOXN000000000SAMN22777266
-
GCA_020694485.1ContigABDOXL000000000SAMN22777264
-
GCA_020694465.1ContigABDOXJ000000000SAMN22777262
-
GCA_020694405.1ContigABDOXK000000000SAMN22777263
-
GCA_020694375.1ContigABDOXF000000000SAMN22777260
-
GCA_020299385.1ContigABCXQH000000000SAMN14371050
Burnett-PUCV26
GCA_019291525.1ContigABBKCY000000000SAMN20305464
LZ317_001
GCA_019291425.1ContigABBKCX000000000SAMN20305461
LZ313_002
GCA_019291405.1ContigABBKDA000000000SAMN20305462
LZ313_003
GCA_019291385.1ContigABBKCW000000000SAMN20305460
LZ313_001
GCA_019291365.1ContigABBKDB000000000SAMN20305459
LZ291_002
GCA_019291345.1ContigABBKDD000000000SAMN20305463
LZ313_004
GCA_019291305.1ContigABBKCV000000000SAMN20305457
LZ288_002
GCA_019291325.1ContigABBKCZ000000000SAMN20305458
LZ291_001
GCA_019291285.1ContigABBKCU000000000SAMN20305466
DG344
GCA_019291265.1ContigABBKCS000000000SAMN20305465
LZ317_002
GCA_019291245.1ContigABBKCT000000000SAMN20305456
LZ288_001
GCA_019291225.1ContigABBKCQ000000000SAMN20305455
LZ266
GCA_019357095.1ContigABBMTA000000000SAMN20364377
-
GCA_019357065.1ContigABBMSS000000000SAMN20364375
-
GCA_019357055.1ContigABBMSX000000000SAMN20364376
-
GCA_019357035.1ContigABBMSZ000000000SAMN20364378
-
GCA_019357015.1ContigABBMSU000000000SAMN20364374
-
GCA_019356995.1ContigABBMSR000000000SAMN20364373
-
GCA_019356975.1ContigABBMSP000000000SAMN20364383
-
GCA_019356955.1ContigABBMST000000000SAMN20364371
-
GCA_019356915.1ContigABBMSQ000000000SAMN20364384
-
GCA_019356925.1ContigABBMSW000000000SAMN20364372
-
GCA_019356895.1ContigABBMSK000000000SAMN20364381
-
GCA_019356875.1ContigABBMSO000000000SAMN20364382
-
GCA_019356855.1ContigABBMSM000000000SAMN20364380
-
GCA_019356835.1ContigABBMSL000000000SAMN20364379
-
GCA_019356815.1ContigABBMSN000000000SAMN20364370
-
GCA_019356775.1ContigABBMSH000000000SAMN20364369
-
GCA_019463525.1ContigABBPIV000000000SAMN20602886
-
GCA_019464035.1ContigABBPJU000000000SAMN20602894
-
GCA_019463985.1ContigABBPJO000000000SAMN20602891
-
GCA_019463975.1ContigABBPJR000000000SAMN20602893
-
GCA_019463955.1ContigABBPJP000000000SAMN20602890
-
GCA_019463935.1ContigABBPJN000000000SAMN20602889
-
GCA_019463915.1ContigABBPJQ000000000SAMN20602892
-
GCA_019463895.1ContigABBPJK000000000SAMN20602888
-
GCA_019463875.1ContigABBPJL000000000SAMN20602887
-
GCA_019463855.1ContigABBPJE000000000SAMN20602885
-
GCA_019463835.1ContigABBPJH000000000SAMN20602895
-
GCA_019463815.1ContigABBPJM000000000SAMN20602899
-
GCA_019463795.1ContigABBPJI000000000SAMN20602897
-
GCA_019463775.1ContigABBPJJ000000000SAMN20602898
-
GCA_019463755.1ContigABBPJG000000000SAMN20602896
-
GCA_018041425.1ContigABACIO000000000SAMN16480827
Burnett-UAB-RT031
GCA_016966655.1ContigAAYWFS000000000SAMN18025520
Burnett-UABPS070
GCA_016966055.1ContigAAYWER000000000SAMN18025952
Burnett-UABPS050
GCA_016966095.1ContigAAYWEU000000000SAMN18025954
Burnett-UABPS091
GCA_017008015.1ContigAAYXYM000000000SAMN17924392
Burnett-UABPS058
GCA_006077435.1ContigAAENGP000000000SAMN11807581
Burnett-SPE25
GCA_006077335.1ContigAAENGW000000000SAMN11806972
Burnett-SL23
GCA_006077315.1ContigAAENGU000000000SAMN11803935
Burnett-SPE34
GCA_006002965.1ContigAAEHVD000000000SAMN11803424
Burnett-SPE44
GCA_005812245.1ContigAADVPJ000000000SAMN10506033
FLAG-46356
GCA_005794145.1ContigAADUXG000000000SAMN08386970
FLAG-34930
GCA_005755135.1ContigAADTCB000000000SAMN11581134
Burnett-MI25
GCA_005960725.1ContigAAEEQD000000000SAMN04487214
FLAG-15208
GCA_006145215.1ContigAAESCE000000000SAMN11807090
Burnett-SPE33
GCA_006145125.1ContigAAESCD000000000SAMN11806968
Burnett-SO27
GCA_006144995.1ContigAAESCG000000000SAMN11803416
Burnett-SPE6
GCA_006247725.1ContigAAEYIX000000000SAMN07791950
FLAG-30677
GCA_005483475.1ContigAACZRH000000000SAMN10799030
FLAG-46671
GCA_005457425.1ContigAACXUG000000000SAMN08386974
FLAG-34931
GCA_005434635.1ContigAACWDO000000000SAMN11581155
Burnett-MI46
GCA_005417995.1ContigAACUYJ000000000SAMN08386971
FLAG-34929
GCA_005608935.1ContigAADILT000000000SAMN09267364
FLAG-40148
GCA_005654795.1ContigAADLNN000000000SAMN10799029
FLAG-46672
GCA_005626095.1ContigAADJSL000000000SAMN08387113
FLAG-34928
GCA_004221885.1ContigAAACTQ000000000SAMN08387123
FLAG-34926
GCA_004220145.1ContigAAACPU000000000SAMN08387112
FLAG-34927
GCA_037203505.1ContigJBBEEV000000000SAMN40419214
Burnett-PUCV15
GCA_037285305.1ContigJBBEEW000000000SAMN40419584
PUCV17_S13
GCA_007541575.1ContigAAIGEJ000000000SAMN12230457
Burnett-UNAM-V13
GCA_007459015.1ContigAAIAAZ000000000SAMN12230482
Burnett-UNAM-V11
GCA_007692385.1ContigAAIPPV000000000SAMN12230444
Burnett-UNAM-V4
GCA_007825125.1ContigAAIYUE000000000SAMN12230426
Burnett-UNAM-V9
GCA_007805115.1ContigAAIXIY000000000SAMN12230495
Burnett-UNAM-V10
GCA_007804515.1ContigAAIXIX000000000SAMN12230483
Burnett-UNAM-V12
GCA_007804175.1ContigAAIXHY000000000SAMN12230458
Burnett-UNAM-V2
GCA_007804155.1ContigAAIXHW000000000SAMN12230459
Burnett-UNAM-V3
GCA_007911585.1ContigAAJEFE000000000SAMN11806860
Burnett-SPE39
GCA_007911005.1ContigAAJEFH000000000SAMN11803905
Burnett-SPE41
GCA_007911085.1ContigAAJEFC000000000SAMN11803422
Burnett-SPE43
GCA_007914865.1ContigAAJEFJ000000000SAMN11803909
Burnett-SPE42
GCA_006487325.1ContigAAFLPF000000000SAMN12108718
Burnett-SPE73
GCA_006487335.1ContigAAFLOY000000000SAMN12108725
Burnett-SPE89
GCA_006485245.1ContigAAFLOO000000000SAMN12108793
Burnett-SPE70
GCA_006484925.1ContigAAFLMZ000000000SAMN12108739
Burnett-SPE88
GCA_006484845.1ContigAAFLNF000000000SAMN12108781
Burnett-SPE93
GCA_006484805.1ContigAAFLNN000000000SAMN12108689
Burnett-SPE56
GCA_006484585.1ContigAAFLNI000000000SAMN12108680
Burnett-SPE50
GCA_006484405.1ContigAAFLNO000000000SAMN12108720
Burnett-SPE78
GCA_006484325.1ContigAAFLNL000000000SAMN12108694
Burnett-SPE82
GCA_006484305.1ContigAAFLMT000000000SAMN12108589
Burnett-SPE64
GCA_006484265.1ContigAAFLNH000000000SAMN12108685
Burnett-SPE84
GCA_006483625.1ContigAAFLNB000000000SAMN12108697
Burnett-SPE76
GCA_006483555.1ContigAAFLMV000000000SAMN12108594
Burnett-SPE90
GCA_006483525.1ContigAAFLNA000000000SAMN12108592
Burnett-SPE65
GCA_007081415.1ContigAAHAQA000000000SAMN07795047
FLAG-30686
GCA_011706515.1ContigAAQSHP000000000SAMN14371002
Burnett-PUCV23
GCA_011708255.1ContigAAQSIU000000000SAMN14370993
Burnett-PUCV30
GCA_011703395.1ContigAAQSCF000000000SAMN14147465
Burnett-PUCV2
GCA_011702735.1ContigAAQSAD000000000SAMN14147464
Burnett-PUCV6
GCA_011702675.1ContigAAQRZV000000000SAMN14146641
Burnett-PUCV1
GCA_011704545.1ContigAAQSEX000000000SAMN14370987
Burnett-PUCV29
GCA_011704815.1ContigAAQSEZ000000000SAMN14370902
Burnett-PUCV22
GCA_011704715.1ContigAAQSFS000000000SAMN14371021
Burnett-PUCV24
GCA_011706075.1ContigAAQSGU000000000SAMN14371018
Burnett-PUCV32
GCA_011691215.1ContigAAQRFL000000000SAMN14147476
Burnett-PUCV4
GCA_011706295.1ContigAAQSGS000000000SAMN14371017
Burnett-PUCV27
GCA_011705335.1ContigAAQSFN000000000SAMN14371005
Burnett-PUCV21
GCA_011705535.1ContigAAQSHF000000000SAMN14370986
Burnett-PUCV31
GCA_011705435.1ContigAAQSFX000000000SAMN14370979
Burnett-PUCV16
GCA_011690395.1ContigAAQREB000000000SAMN14147475
Burnett-PUCV5
GCA_011673325.1ContigAAQQCR000000000SAMN14207277
Burnett-PUCV8
GCA_011686595.1ContigAAQQXV000000000SAMN14167320
Burnett-PUCV11
GCA_011702235.1ContigAAQRYT000000000SAMN14167374
Burnett-PUCV10
GCA_011704655.1ContigAAQSFQ000000000SAMN14370903
Burnett-PUCV25
GCA_011687195.1ContigAAQQXW000000000SAMN14167322
Burnett-PUCV12
GCA_011678575.1ContigAAQQGI000000000SAMN14147473
Burnett-PUCV7
GCA_011663675.1ContigAAQPLE000000000SAMN14207029
Burnett-PUCV14
GCA_011665355.1ContigAAQPNY000000000SAMN14167312
Burnett-PUCV3
GCA_011664235.1ContigAAQPLA000000000SAMN14207023
Burnett-PUCV13
GCA_011676675.1ContigAAQQLU000000000SAMN14167314
Burnett-PUCV9
GCA_013576175.1ContigAAUDES000000000SAMN15430581
PUCV56
GCA_013576275.1ContigAAUDET000000000SAMN15430582
Burnett_PUCV38
GCA_013576255.1ContigAAUDEP000000000SAMN15430577
PUCV74
GCA_013576235.1ContigAAUDER000000000SAMN15430584
PUCV64
GCA_013576215.1ContigAAUDEN000000000SAMN15430572
PUCV70
GCA_013576125.1ContigAAUDDM000000000SAMN15430598
PUCV55
GCA_013576095.1ContigAAUDEQ000000000SAMN15430571
UAB-RT027
GCA_013568075.1ContigAAUDEE000000000SAMN15430603
PUCV60
GCA_013568035.1ContigAAUDEH000000000SAMN15430589
PUCV58
GCA_013568055.1ContigAAUDEJ000000000SAMN15430576
PUCV68
GCA_013568015.1ContigAAUDEC000000000SAMN15430595
PUCV69
GCA_013567975.1ContigAAUDDP000000000SAMN15430601
UAB-RT008
GCA_013567995.1ContigAAUDED000000000SAMN15430594
PUCV63
GCA_013567955.1ContigAAUDDN000000000SAMN15430600
PUCV76
GCA_013567895.1ContigAAUDDL000000000SAMN15430599
PUCV59
GCA_013567875.1ContigAAUDDT000000000SAMN15430605
UAB-RT014
GCA_013567775.1ContigAAUDDV000000000SAMN15430597
Burnett_PUCV34
GCA_013567675.1ContigAAUDEB000000000SAMN15430588
UAB-RT024
GCA_013567535.1ContigAAUDDS000000000SAMN15430593
Burnett_PUCV33
GCA_013568175.1ContigAAUDEI000000000SAMN15430575
UAB-RT022
GCA_013568155.1ContigAAUDEG000000000SAMN15430578
PUCV62
GCA_013568115.1ContigAAUDEF000000000SAMN15430573
PUCV73
GCA_013568125.1ContigAAUDEK000000000SAMN15430574
PUCV61
GCA_013568235.1ContigAAUDEU000000000SAMN15430579
Burnett_PUCV37
GCA_013568295.1ContigAAUDEV000000000SAMN15430565
PUCV72
GCA_013568275.1ContigAAUDEW000000000SAMN15430566
PUCV57
GCA_013568455.1ContigAAUDEZ000000000SAMN15430569
Burnett_PUCV39
GCA_013568435.1ContigAAUDFC000000000SAMN15430568
UAB-RT001
GCA_013568415.1ContigAAUDFE000000000SAMN15430570
PUCV66
GCA_013568395.1ContigAAUDFB000000000SAMN15430561
Burnett_PUCV35
GCA_013568375.1ContigAAUDFA000000000SAMN15430580
UAB-RT023
GCA_013568355.1ContigAAUDEY000000000SAMN15430562
PUCV71
GCA_013568335.1ContigAAUDEX000000000SAMN15430564
Burnett_PUCV36
GCA_013567275.1ContigAAUDDX000000000SAMN15430606
UAB-RT003
GCA_013567255.1ContigAAUDDW000000000SAMN15430592
PUCV65
GCA_013567165.1ContigAAUDDZ000000000SAMN15430586
UAB-RT002
GCA_013566975.1ContigAAUDDY000000000SAMN15430591
PUCV67
GCA_014272045.1ContigAAVNFS000000000SAMN15889781
Burnett_PUCV48
GCA_014272025.1ContigAAVNFW000000000SAMN15889773
Burnett_PUCV42
GCA_014272005.1ContigAAVNGD000000000SAMN15889776
Burnett_PUCV54
GCA_014271965.1ContigAAVNFQ000000000SAMN15889774
Burnett_PUCV52
GCA_014272105.1ContigAAVNGC000000000SAMN15889778
Burnett_PUCV44
GCA_014272065.1ContigAAVNGB000000000SAMN15889771
Burnett_PUCV45
GCA_014272445.1ContigAAVNFV000000000SAMN15889775
Burnett_PUCV49
GCA_014272345.1ContigAAVNFL000000000SAMN15889786
Burnett_PUCV28
GCA_014271785.1ContigAAVNFX000000000SAMN15889787
Burnett_PUCV47
GCA_014272385.1ContigAAVNFP000000000SAMN15889788
Burnett_PUCV51
GCA_014271905.1ContigAAVNFY000000000SAMN15889777
Burnett_PUCV53
GCA_014271885.1ContigAAVNGE000000000SAMN15889779
Burnett_PUCV40
GCA_014271865.1ContigAAVNGA000000000SAMN15889780
Burnett_PUCV46
GCA_014271765.1ContigAAVNFT000000000SAMN15889784
Burnett_PUCV41
GCA_014272325.1ContigAAVNFK000000000SAMN15889783
Burnett_PUCV50
GCA_010451215.1ContigAANUWC000000000SAMN05933718
FLAG-867060-S4
GCA_010560665.1ContigAAOBUK000000000SAMN05933717
FLAG-867060-C1
SRA Data Details
ParameterValue
Data volume, Gbases125
Data volume, Mbytes73728

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