ID 312960 - BioProject

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Accession: PRJNA312960 ID: 312960

200 Mammals

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This project is a component of the Earth BioGenome Project (EBP)

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39 additional projects are components of the Earth BioGenome Project (EBP).

Sequencing the genome of 200 mammals

Accession	PRJNA312960
Type	Umbrella project (Subtype:Disease)
Submission	Registration date: 23-Feb-2016 Broad Institute

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	131
SRA Experiments	136
Publications
PubMed	1
PMC	1
Other datasets
BioSample	139
Assembly	131

SRA Data Details

Parameter	Value
Data volume, Gbases	12,124
Data volume, Tbytes	7.45

This project encompasses the following 141 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Scaffolds
SRA or Trace
No data links
Total

130
1
10
141

BioProject accession	Assembly level	Name	Title
PRJNA399339	Scaffolds	Acomys cahirinus	Acomys cahirinus isolate:US019 Genome sequencing and assembly (Broad Institute)
PRJNA412530	SRA or Trace	Acomys cahirinus	Acomys cahirinus Genome sequencing (Broad Institute)
PRJNA399372	Scaffolds	Alouatta palliata	Alouatta palliata isolate:BS02 Genome sequencing and assembly (Broad Institute)
PRJNA399350	Scaffolds	Anoura caudifer	Anoura caudifer isolate:US021 Genome sequencing and assembly (Broad Institute)
PRJNA399373	Scaffolds	Antilocapra americana	Antilocapra americana isolate:BS35 Genome sequencing and assembly (Broad Institute)

List all 141 'Genome sequencing' projects...

BioProject accession	Assembly level	Name	Title
PRJNA399339	Scaffolds	Acomys cahirinus	Acomys cahirinus isolate:US019 Genome sequencing and assembly (Broad Institute)
PRJNA412530	SRA or Trace	Acomys cahirinus	Acomys cahirinus Genome sequencing (Broad Institute)
PRJNA399372	Scaffolds	Alouatta palliata	Alouatta palliata isolate:BS02 Genome sequencing and assembly (Broad Institute)
PRJNA399350	Scaffolds	Anoura caudifer	Anoura caudifer isolate:US021 Genome sequencing and assembly (Broad Institute)
PRJNA399373	Scaffolds	Antilocapra americana	Antilocapra americana isolate:BS35 Genome sequencing and assembly (Broad Institute)
PRJNA399351	Scaffolds	Antrozous pallidus	Antrozous pallidus isolate:US032 Genome sequencing and assembly (Broad Institute)
PRJNA728710	No data links	Antrozous pallidus isolate:US032 Genome sequencing and assembly	Antrozous pallidus isolate:US032 Genome sequencing and assembly (Zoonomia)
PRJNA399342	Scaffolds	Aplodontia rufa	Aplodontia rufa isolate:BS102 Genome sequencing and assembly (Broad Institute)
PRJNA399471	Scaffolds	Artibeus jamaicensis	Artibeus jamaicensis isolate:US092 Genome sequencing and assembly (Broad Institute)
PRJNA399374	Scaffolds	Ateles geoffroyi	Ateles geoffroyi isolate:BS17 Genome sequencing and assembly (Broad Institute)
PRJNA729101	No data links	Ateles geoffroyi isolate:BS17 Genome sequencing and assembly	Ateles geoffroyi isolate:BS17 Genome sequencing and assembly (Zoonomia)
PRJNA399375	Scaffolds	Beatragus hunteri	Beatragus hunteri isolate:BS46 Genome sequencing and assembly (Broad Institute)
PRJNA399370	Scaffolds	Bradypus variegatus	Bradypus variegatus isolate:BS16 Genome sequencing and assembly (Broad Institute)
PRJNA399441	Scaffolds	Canis lupus familiaris	Canis lupus familiaris isolate:BS72 Genome sequencing and assembly (Broad Institute)
PRJNA399377	Scaffolds	Capromys pilorides	Capromys pilorides isolate:US015 Genome sequencing and assembly (Broad Institute)
PRJNA399426	No data links	Carlito syrichta	Carlito syrichta Genome sequencing (Broad Institute)
PRJNA399439	Scaffolds	Carollia perspicillata	Carollia perspicillata isolate:US073 Genome sequencing and assembly (Broad Institute)
PRJNA399431	Scaffolds	Castor canadensis	Castor canadensis isolate:US014 Genome sequencing and assembly (Broad Institute)
PRJNA399378	Scaffolds	Catagonus wagneri	Catagonus wagneri isolate:BS18 Genome sequencing and assembly (Broad Institute)
PRJNA399343	Scaffolds	Cavia tschudii	Cavia tschudii isolate:US050 Genome sequencing and assembly (Broad Institute)
PRJNA399379	Scaffolds	Cebus albifrons	Cebus albifrons isolate:BS31 Genome sequencing and assembly (Broad Institute)
PRJNA399457	Scaffolds	Ceratotherium simum cottoni	Ceratotherium simum cottoni isolate:BS59 Genome sequencing and assembly (Broad Institute)
PRJNA399380	Scaffolds	Cercopithecus neglectus	Cercopithecus neglectus isolate:BS29 Genome sequencing and assembly (Broad Institute)
PRJNA399381	Scaffolds	Chaetophractus vellerosus	Chaetophractus vellerosus isolate:US068 Genome sequencing and assembly (Broad Institute)
PRJNA399382	Scaffolds	Cheirogaleus medius	Cheirogaleus medius isolate:BS12 Genome sequencing and assembly (Broad Institute)
PRJNA399383	Scaffolds	Choloepus didactylus	Choloepus didactylus isolate:US054 Genome sequencing and assembly (Broad Institute)
PRJNA399474	Scaffolds	Chrysochloris asiatica	Chrysochloris asiatica isolate:BS56 Genome sequencing and assembly (Broad Institute)
PRJNA399445	Scaffolds	Craseonycteris thonglongyai	Craseonycteris thonglongyai isolate:US097 Genome sequencing and assembly (Broad Institute)
PRJNA399436	Scaffolds	Cricetomys gambianus	Cricetomys gambianus isolate:US082 Genome sequencing and assembly (Broad Institute)
PRJNA399360	Scaffolds	Crocidura indochinensis	Crocidura indochinensis isolate:US011 Genome sequencing and assembly (Broad Institute)
PRJNA399384	Scaffolds	Cryptoprocta ferox	Cryptoprocta ferox isolate:BS36 Genome sequencing and assembly (Broad Institute)
PRJNA399344	Scaffolds	Ctenodactylus gundi	Ctenodactylus gundi isolate:US049 Genome sequencing and assembly (Broad Institute)
PRJNA399368	Scaffolds	Ctenomys sociabilis	Ctenomys sociabilis isolate:BS34 Genome sequencing and assembly (Broad Institute)
PRJNA399385	Scaffolds	Cuniculus paca	Cuniculus paca isolate:BS43 Genome sequencing and assembly (Broad Institute)
PRJNA399449	No data links	Dactylomys boliviensis	Dactylomys boliviensis Genome sequencing (Broad Institute)
PRJNA399386	Scaffolds	Dasyprocta punctata	Dasyprocta punctata isolate:BS37 Genome sequencing and assembly (Broad Institute)
PRJNA399387	Scaffolds	Daubentonia madagascariensis	Daubentonia madagascariensis isolate:BS11 Genome sequencing and assembly (Broad Institute)
PRJNA399388	Scaffolds	Diceros bicornis	Diceros bicornis isolate:BS38 Genome sequencing and assembly (Broad Institute)
PRJNA399389	Scaffolds	Dinomys branickii	Dinomys branickii isolate:US070 Genome sequencing and assembly (Broad Institute)
PRJNA399390	Scaffolds	Dipodomys stephensi	Dipodomys stephensi isolate:BS19 Genome sequencing and assembly (Broad Institute)
PRJNA399391	Scaffolds	Dolichotis patagonum	Dolichotis patagonum isolate:US062 Genome sequencing and assembly (Broad Institute)
PRJNA399475	Scaffolds	Elephantulus edwardii	Elephantulus edwardii isolate:BS57 Genome sequencing and assembly (Broad Institute)
PRJNA399392	Scaffolds	Erythrocebus patas	Erythrocebus patas isolate:BS28 Genome sequencing and assembly (Broad Institute)
PRJNA399463	Scaffolds	Eschrichtius robustus	Eschrichtius robustus isolate:BS60 Genome sequencing and assembly (Broad Institute)
PRJNA399464	Scaffolds	Eubalaena japonica	Eubalaena japonica isolate:BS61 Genome sequencing and assembly (Broad Institute)
PRJNA399393	Scaffolds	Eulemur fulvus	Eulemur fulvus isolate:BS10 Genome sequencing and assembly (Broad Institute)
PRJNA399394	Scaffolds	Felis nigripes	Felis nigripes isolate:BS47 Genome sequencing and assembly (Broad Institute)
PRJNA399345	Scaffolds	Galeopterus variegatus	Galeopterus variegatus isolate:US047 Genome sequencing and assembly (Broad Institute)
PRJNA399435	Scaffolds	Glis glis	Glis glis isolate:US078 Genome sequencing and assembly (Broad Institute)
PRJNA399395	Scaffolds	Graphiurus murinus	Graphiurus murinus isolate:US067 Genome sequencing and assembly (Broad Institute)
PRJNA399396	Scaffolds	Helogale parvula	Helogale parvula isolate:US077 Genome sequencing and assembly (Broad Institute)
PRJNA399397	Scaffolds	Hemitragus hylocrius	Hemitragus hylocrius isolate:BS50 Genome sequencing and assembly (Broad Institute)
PRJNA399398	Scaffolds	Heterohyrax brucei	Heterohyrax brucei isolate:US064 Genome sequencing and assembly (Broad Institute)
PRJNA399399	Scaffolds	Hippopotamus amphibius	Hippopotamus amphibius isolate:BS01 Genome sequencing and assembly (Broad Institute)
PRJNA399442	Scaffolds	Hipposideros galeritus	Hipposideros galeritus isolate:US101 Genome sequencing and assembly (Broad Institute)
PRJNA399453	No data links	Hoplomys gymnurus	Hoplomys gymnurus Genome sequencing (Broad Institute)
PRJNA399363	Scaffolds	Hyaena hyaena	Hyaena hyaena isolate:BS54 Genome sequencing and assembly (Broad Institute)
PRJNA399400	Scaffolds	Hydrochoerus hydrochaeris	Hydrochoerus hydrochaeris isolate:US065 Genome sequencing and assembly (Broad Institute)
PRJNA399401	Scaffolds	Hystrix cristata	Hystrix cristata isolate:US031 Genome sequencing and assembly (Broad Institute)
PRJNA399458	Scaffolds	Indri indri	Indri indri isolate:BS62 Genome sequencing and assembly (Broad Institute)
PRJNA399465	Scaffolds	Inia geoffrensis	Inia geoffrensis isolate:BS63 Genome sequencing and assembly (Broad Institute)
PRJNA399466	Scaffolds	Kogia breviceps	Kogia breviceps isolate:BS64 Genome sequencing and assembly (Broad Institute)
PRJNA399352	Scaffolds	Lasiurus borealis	Lasiurus borealis isolate:US024 Genome sequencing and assembly (Broad Institute)
PRJNA399402	Scaffolds	Lemur catta	Lemur catta isolate:BS26 Genome sequencing and assembly (Broad Institute)
PRJNA399359	Scaffolds	Lepus americanus	Lepus americanus isolate:BS55 Genome sequencing and assembly (Broad Institute)
PRJNA399443	Scaffolds	Macroglossus sobrinus	Macroglossus sobrinus isolate:US102 Genome sequencing and assembly (Broad Institute)
PRJNA399440	Scaffolds	Macrotus californicus	Macrotus californicus isolate:US035 Genome sequencing and assembly (Broad Institute)
PRJNA399448	No data links	Mallomys	Mallomys Genome sequencing (Broad Institute)
PRJNA399353	Scaffolds	Megaderma lyra	Megaderma lyra isolate:US036 Genome sequencing and assembly (Broad Institute)
PRJNA399403	Scaffolds	Mellivora capensis	Mellivora capensis isolate:BS25 Genome sequencing and assembly (Broad Institute)
PRJNA399432	Scaffolds	Meriones unguiculatus	Meriones unguiculatus isolate:US013 Genome sequencing and assembly (Broad Institute)
PRJNA399476	Scaffolds	Mesoplodon bidens	Mesoplodon bidens isolate:US080 Genome sequencing and assembly (Broad Institute)
PRJNA399354	Scaffolds	Micronycteris hirsuta	Micronycteris hirsuta isolate:US037 Genome sequencing and assembly (Broad Institute)
PRJNA399366	Scaffolds	Miniopterus schreibersii	Miniopterus schreibersii isolate:US075 Genome sequencing and assembly (Broad Institute)
PRJNA399341	Scaffolds	Mirounga angustirostris	Mirounga angustirostris isolate:BS05 Genome sequencing and assembly (Broad Institute)
PRJNA399404	Scaffolds	Mirza coquereli	Mirza coquereli isolate:BS13 Genome sequencing and assembly (Broad Institute)
PRJNA399349	Scaffolds	Monodon monoceros	Monodon monoceros Genome sequencing and assembly (Broad Institute)
PRJNA399472	Scaffolds	Mormoops blainvillei	Mormoops blainvillei isolate:US096 Genome sequencing and assembly (Broad Institute)
PRJNA399405	Scaffolds	Moschus moschiferus	Moschus moschiferus isolate:BS20 Genome sequencing and assembly (Broad Institute)
PRJNA399406	Scaffolds	Mungos mungo	Mungos mungo isolate:US063 Genome sequencing and assembly (Broad Institute)
PRJNA399367	Scaffolds	Murina aurata feae	Murina aurata feae isolate:US074 Genome sequencing and assembly (Broad Institute)
PRJNA399340	Scaffolds	Muscardinus avellanarius	Muscardinus avellanarius isolate:US077 Genome sequencing and assembly (Broad Institute)
PRJNA399346	Scaffolds	Myocastor coypus	Myocastor coypus isolate:US051 Genome sequencing and assembly (Broad Institute)
PRJNA399444	Scaffolds	Myotis myotis	Myotis myotis isolate:US100 Genome sequencing and assembly (Broad Institute)
PRJNA399407	Scaffolds	Myrmecophaga tridactyla	Myrmecophaga tridactyla isolate:BS39 Genome sequencing and assembly (Broad Institute)
PRJNA399408	Scaffolds	Nasalis larvatus	Nasalis larvatus isolate:BS101 Genome sequencing and assembly (Broad Institute)
PRJNA399438	No data links	Neotoma lepida	Neotoma lepida Genome sequencing (Broad Institute)
PRJNA399450	Scaffolds	Nesogale talazaci	Nesogale talazaci isolate:US118 Genome sequencing and assembly (Broad Institute)
PRJNA399473	Scaffolds	Noctilio leporinus	Noctilio leporinus isolate:US093 Genome sequencing and assembly (Broad Institute)
PRJNA399409	Scaffolds	Nycticebus coucang	Nycticebus coucang isolate:BS32 Genome sequencing and assembly (Broad Institute)
PRJNA399355	Scaffolds	Nycticeius humeralis	Nycticeius humeralis isolate:US023 Genome sequencing and assembly (Broad Institute)
PRJNA399451	Scaffolds	Ondatra zibethicus	Ondatra zibethicus isolate:US110 Genome sequencing and assembly (Broad Institute)
PRJNA399348	Scaffolds	Onychomys torridus	Onychomys torridus isolate:US017 Genome sequencing and assembly (Broad Institute)
PRJNA399447	Scaffolds	Orientallactaga bullata	Orientallactaga bullata isolate:US110 Genome sequencing and assembly (Broad Institute)
PRJNA399461	Scaffolds	Orycteropus afer	Orycteropus afer isolate:BS58 Genome sequencing and assembly (Broad Institute)
PRJNA399410	Scaffolds	Ovis canadensis	Ovis canadensis isolate:BS48 Genome sequencing and assembly (Broad Institute)
PRJNA399411	Scaffolds	Panthera onca	Panthera onca isolate:BS21 Genome sequencing and assembly (Broad Institute)
PRJNA399364	Scaffolds	Paradoxurus hermaphroditus	Paradoxurus hermaphroditus isolate:BSD07 Genome sequencing and assembly (Broad Institute)
PRJNA399412	Scaffolds	Pedetes capensis	Pedetes capensis isolate:US022 Genome sequencing and assembly (Broad Institute)
PRJNA399459	Scaffolds	Perognathus longimembris pacificus	Perognathus longimembris pacificus isolate:BS65 Genome sequencing and assembly (Broad Institute)
PRJNA399347	Scaffolds	Petromus typicus	Petromus typicus isolate:US052 Genome sequencing and assembly (Broad Institute)
PRJNA399460	Scaffolds	Phataginus tricuspis	Phataginus tricuspis isolate:BS60 Genome sequencing and assembly (Broad Institute)
PRJNA399454	Scaffolds	Phocoena phocoena	Phocoena phocoena isolate:BS71 Genome sequencing and assembly (Broad Institute)
PRJNA399427	Scaffolds	Pipistrellus pipistrellus	Pipistrellus pipistrellus isolate:US040 Genome sequencing and assembly (Broad Institute)
PRJNA399413	Scaffolds	Pithecia pithecia	Pithecia pithecia isolate:BS33 Genome sequencing and assembly (Broad Institute)
PRJNA399467	Scaffolds	Platanista minor	Platanista minor isolate:BS66 Genome sequencing and assembly (Broad Institute)
PRJNA399376	Scaffolds	Plecturocebus donacophilus	Plecturocebus donacophilus isolate:BS44 Genome sequencing and assembly (Broad Institute)
PRJNA399468	Scaffolds	Pontoporia blainvillei	Pontoporia blainvillei isolate:BS67 Genome sequencing and assembly (Broad Institute)
PRJNA399414	Scaffolds	Procavia capensis	Procavia capensis isolate:US060 Genome sequencing and assembly (Broad Institute)
PRJNA399365	Scaffolds	Pteronura brasiliensis	Pteronura brasiliensis isolate:BS51 Genome sequencing and assembly (Broad Institute)
PRJNA399415	Scaffolds	Pygathrix nemaeus	Pygathrix nemaeus isolate:BS24 Genome sequencing and assembly (Broad Institute)
PRJNA399416	Scaffolds	Rangifer tarandus	Rangifer tarandus isolate:US061 Genome sequencing and assembly (Broad Institute)
PRJNA399358	No data links	Rhabdomys pumilio	Rhabdomys pumilio Genome sequencing (Broad Institute)
PRJNA399429	Scaffolds	Rhinolophus ferrumequinum	Rhinolophus ferrumequinum isolate:US033 Genome sequencing and assembly (Broad Institute)
PRJNA399452	Scaffolds	Rhizomys pruinosus	Rhizomys pruinosus isolate:US103 Genome sequencing and assembly (Broad Institute)
PRJNA399428	Scaffolds	Rousettus aegyptiacus	Rousettus aegyptiacus isolate:US006 Genome sequencing and assembly (Broad Institute)
PRJNA399417	Scaffolds	Saguinus imperator	Saguinus imperator isolate:BS22 Genome sequencing and assembly (Broad Institute)
PRJNA399418	Scaffolds	Saiga tatarica	Saiga tatarica isolate:BS49 Genome sequencing and assembly (Broad Institute)
PRJNA399361	Scaffolds	Scalopus aquaticus	Scalopus aquaticus isolate:US009 Genome sequencing and assembly (Broad Institute)
PRJNA399419	Scaffolds	Semnopithecus entellus	Semnopithecus entellus isolate:BS30 Genome sequencing and assembly (Broad Institute)
PRJNA399433	Scaffolds	Sigmodon hispidus	Sigmodon hispidus isolate:US029 Genome sequencing and assembly (Broad Institute)
PRJNA399371	Scaffolds	Solenodon paradoxus	Solenodon paradoxus isolate:US097 Genome sequencing and assembly (Broad Institute)
PRJNA399437	Scaffolds	Spilogale gracilis	Spilogale gracilis isolate:US072 Genome sequencing and assembly (Broad Institute)
PRJNA399357	Scaffolds	Suricata suricatta	Suricata suricatta isolate:BS45 Genome sequencing and assembly (Broad Institute)
PRJNA399430	Scaffolds	Tadarida brasiliensis	Tadarida brasiliensis isolate:US034 Genome sequencing and assembly (Broad Institute)
PRJNA399420	Scaffolds	Tamandua tetradactyla	Tamandua tetradactyla isolate:US055 Genome sequencing and assembly (Broad Institute)
PRJNA399446	No data links	Tamias amoenus	Tamias amoenus Genome sequencing (Broad Institute)
PRJNA399421	Scaffolds	Tapirus indicus	Tapirus indicus isolate:BS100 Genome sequencing and assembly (Broad Institute)
PRJNA399422	Scaffolds	Tapirus terrestris	Tapirus terrestris isolate:BS40 Genome sequencing and assembly (Broad Institute)
PRJNA399455	No data links	Thomomys bottae	Thomomys bottae Genome sequencing (Broad Institute)
PRJNA399470	Scaffolds	Thryonomys swinderianus	Thryonomys swinderianus isolate:US090 Genome sequencing and assembly (Broad Institute)
PRJNA399423	Scaffolds	Tolypeutes matacus	Tolypeutes matacus isolate:US073 Genome sequencing and assembly (Broad Institute)
PRJNA399356	Scaffolds	Tonatia saurophila	Tonatia saurophila isolate:US038 Genome sequencing and assembly (Broad Institute)
PRJNA399456	Scaffolds	Tragulus javanicus	Tragulus javanicus isolate:US108 Genome sequencing and assembly (Broad Institute)
PRJNA399462	Scaffolds	Tupaia tana	Tupaia tana isolate:BS70 Genome sequencing and assembly (Broad Institute)
PRJNA399362	Scaffolds	Uropsilus gracilis	Uropsilus gracilis isolate:US010 Genome sequencing and assembly (Broad Institute)
PRJNA399424	Scaffolds	Vulpes lagopus	Vulpes lagopus isolate:US066 Genome sequencing and assembly (Broad Institute)
PRJNA399425	Scaffolds	Xerus inauris	Xerus inauris isolate:US057 Genome sequencing and assembly (Broad Institute)
PRJNA399369	Scaffolds	Zalophus californianus	Zalophus californianus isolate:BS06 Genome sequencing and assembly (Broad Institute)
PRJNA399434	Scaffolds	Zapus hudsonius	Zapus hudsonius isolate:BS14 Genome sequencing and assembly (Broad Institute)
PRJNA399469	Scaffolds	Ziphius cavirostris	Ziphius cavirostris isolate:BS68 Genome sequencing and assembly (Broad Institute)

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