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Accession: PRJNA319594 ID: 319594

Escherichia coli

GenomeTrakr project: Escherichia coli/Shigella, MDU PHL, Australia

See Genome Information for Escherichia coli
Whole genome sequencing of Escherichia coli and Shigella isolates as part of MDU PHL routine surveillance activities.
AccessionPRJNA319594
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
SubmissionRegistration date: 2-Apr-2020
Microbiological Diagnostics Unit
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)1350
SRA Experiments1357
Other datasets
BioSample1357
Assembly1350
Assembly details:
Assembly levelNumber of Assemblies
1350
1350
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_018088465.1ContigABADPH000000000SAMN10967731
AUSMDU00005159
GCA_020213945.1ContigABCTFE000000000SAMN11008320
AUSMDU00014196
GCA_020204505.1ContigABCSOQ000000000SAMN11008345
AUSMDU00014364
GCA_020309365.1ContigABCYIK000000000SAMN10967767
AUSMDU00006515
GCA_020309225.1ContigABCYIJ000000000SAMN10967802
AUSMDU00021391
GCA_020309205.1ContigABCYIH000000000SAMN10967734
AUSMDU00005190
GCA_020309185.1ContigABCYII000000000SAMN10967733
AUSMDU00005162
GCA_020309165.1ContigABCYIG000000000SAMN11008295
AUSMDU00014169
GCA_020309145.1ContigABCYIF000000000SAMN11008130
AUSMDU00014226
GCA_020309125.1ContigABCYIC000000000SAMN11008314
AUSMDU00014139
GCA_020309105.1ContigABCYIB000000000SAMN11008223
AUSMDU00014345
GCA_020309085.1ContigABCYIA000000000SAMN11008222
AUSMDU00014344
GCA_020309065.1ContigABCYHX000000000SAMN11008326
AUSMDU00014337
GCA_020309045.1ContigABCYHV000000000SAMN11008327
AUSMDU00014351
GCA_020309025.1ContigABCYHW000000000SAMN11008219
AUSMDU00014338
GCA_020309005.1ContigABCYHZ000000000SAMN11008126
AUSMDU00014221
GCA_020308985.1ContigABCYIE000000000SAMN11008346
AUSMDU00014385
GCA_020308965.1ContigABCYHY000000000SAMN11008328
AUSMDU00014353
GCA_020308945.1ContigABCYID000000000SAMN11008315
AUSMDU00014141
GCA_020308925.1ContigABCYHU000000000SAMN11008204
AUSMDU00014051
GCA_020308905.1ContigABCYHT000000000SAMN11008377
AUSMDU00014374
GCA_020308885.1ContigABCYHR000000000SAMN11008325
AUSMDU00014328
GCA_020308865.1ContigABCYHN000000000SAMN11008318
AUSMDU00014170
GCA_020308845.1ContigABCYHS000000000SAMN11008321
AUSMDU00014201
GCA_020308825.1ContigABCYHO000000000SAMN11008317
AUSMDU00014157
GCA_020308805.1ContigABCYHQ000000000SAMN11008322
AUSMDU00014271
GCA_020308785.1ContigABCYHP000000000SAMN11008316
AUSMDU00014142
GCA_020308765.1ContigABCYHM000000000SAMN11008319
AUSMDU00014191
GCA_020308745.1ContigABCYHL000000000SAMN11008324
AUSMDU00014321
GCA_020308725.1ContigABCYHJ000000000SAMN11008249
AUSMDU00014298
GCA_020308705.1ContigABCYHK000000000SAMN11008344
AUSMDU00014349
GCA_020308685.1ContigABCYHH000000000SAMN11008107
AUSMDU00014193
GCA_020308665.1ContigABCYHF000000000SAMN11008057
AUSMDU00014082
GCA_015328085.1ContigAAXDZE000000000SAMN11008339
AUSMDU00014074
GCA_015328065.1ContigAAXDZF000000000SAMN11008335
AUSMDU00014165
GCA_014346035.1ContigAAVPXN000000000SAMN11008304
AUSMDU00014209
GCA_014347955.1ContigAAVPXR000000000SAMN11008176
AUSMDU00014316
GCA_014345955.1ContigAAVPXJ000000000SAMN11008281
AUSMDU00014175
GCA_014345575.1ContigAAVPXQ000000000SAMN11008052
AUSMDU00014073
GCA_014345455.1ContigAAVPXI000000000SAMN11008300
AUSMDU00014277
GCA_014345085.1ContigAAVPXM000000000SAMN11008181
AUSMDU00014325
GCA_014345055.1ContigAAVPXO000000000SAMN11008055
AUSMDU00014080
GCA_014345035.1ContigAAVPXT000000000SAMN11008243
AUSMDU00014189
GCA_014345135.1ContigAAVPXL000000000SAMN11008073
AUSMDU00014102
GCA_014345215.1ContigAAVPXU000000000SAMN11008306
AUSMDU00014136
GCA_012297945.1ContigAASFPN000000000SAMN11008096
AUSMDU00014164
GCA_011899425.1ContigAARDKB000000000SAMN11008196
AUSMDU00014379
GCA_011979065.1ContigAARDPG000000000SAMN11008030
AUSMDU00014258
GCA_011965405.1ContigAARHRC000000000SAMN11008146
AUSMDU00014251
GCA_011902045.1ContigAARDLD000000000SAMN11008066
AUSMDU00014092
GCA_011902005.1ContigAARDLA000000000SAMN11008245
AUSMDU00014058
GCA_011901985.1ContigAARDKX000000000SAMN11008157
AUSMDU00014278
GCA_011901965.1ContigAARDLB000000000SAMN11008299
AUSMDU00014363
GCA_011901945.1ContigAARDKV000000000SAMN11008156
AUSMDU00014276
GCA_011901905.1ContigAARDKY000000000SAMN11008161
AUSMDU00014286
GCA_011901865.1ContigAARDGM000000000SAMN11008175
AUSMDU00014315
GCA_011901885.1ContigAARDGN000000000SAMN11008059
AUSMDU00014085
GCA_011899855.1ContigAARDLF000000000SAMN11008148
AUSMDU00014253
GCA_011899835.1ContigAARDLG000000000SAMN11008209
AUSMDU00014166
GCA_011899805.1ContigAARDLE000000000SAMN11008208
AUSMDU00014159
GCA_011899795.1ContigAARDLC000000000SAMN11008098
AUSMDU00014173
GCA_011899765.1ContigAARDKT000000000SAMN11008058
AUSMDU00014084
GCA_011899745.1ContigAARDKP000000000SAMN11008286
AUSMDU00014323
GCA_011899725.1ContigAARDKU000000000SAMN11008253
AUSMDU00014061
GCA_011899685.1ContigAARDKZ000000000SAMN11008207
AUSMDU00014152
GCA_011899605.1ContigAARDKW000000000SAMN11008301
AUSMDU00014174
GCA_011899585.1ContigAARDKN000000000SAMN11008211
AUSMDU00014180
GCA_011899565.1ContigAARDKE000000000SAMN11008069
AUSMDU00014095
GCA_011899545.1ContigAARDKL000000000SAMN11008380
AUSMDU00006024
GCA_011899525.1ContigAARDKM000000000SAMN11008095
AUSMDU00014163
GCA_011899505.1ContigAARDKI000000000SAMN11008333
AUSMDU00014339
GCA_011899465.1ContigAARDKF000000000SAMN11008075
AUSMDU00014106
GCA_011899485.1ContigAARDKD000000000SAMN11008297
AUSMDU00014204
GCA_011899445.1ContigAARDKJ000000000SAMN11008199
AUSMDU00014393
GCA_011899405.1ContigAARDKH000000000SAMN11008215
AUSMDU00014319
GCA_011899385.1ContigAARDKC000000000SAMN11008104
AUSMDU00014185
GCA_011899365.1ContigAARDJX000000000SAMN11008298
AUSMDU00014346
GCA_011899345.1ContigAARDKA000000000SAMN11008206
AUSMDU00014063
GCA_011899325.1ContigAARDJW000000000SAMN11008205
AUSMDU00014052
GCA_011899285.1ContigAARDJS000000000SAMN11008201
AUSMDU00014395
GCA_011899305.1ContigAARDJV000000000SAMN11008070
AUSMDU00014096
GCA_011899265.1ContigAARDJO000000000SAMN11008331
AUSMDU00014145
GCA_011899245.1ContigAARDJR000000000SAMN11008296
AUSMDU00014162
GCA_011899215.1ContigAARDJU000000000SAMN11008323
AUSMDU00014304
GCA_011899205.1ContigAARDJZ000000000SAMN11008332
AUSMDU00014120
GCA_011899185.1ContigAARDJY000000000SAMN11008103
AUSMDU00014184
GCA_011899165.1ContigAARDJP000000000SAMN11008162
AUSMDU00014292
GCA_011899145.1ContigAARDJQ000000000SAMN11008382
AUSMDU00006040
GCA_011899125.1ContigAARDJG000000000SAMN11008071
AUSMDU00014097
GCA_011899105.1ContigAARDJH000000000SAMN11008198
AUSMDU00014388
GCA_011899085.1ContigAARDJI000000000SAMN11008305
AUSMDU00014391
GCA_011899065.1ContigAARDJC000000000SAMN11008097
AUSMDU00014167
GCA_011899045.1ContigAARDJN000000000SAMN11008212
AUSMDU00014192
GCA_011899025.1ContigAARDKG000000000SAMN11008074
AUSMDU00014105
GCA_011899005.1ContigAARDJB000000000SAMN11008379
AUSMDU00006082
GCA_011898965.1ContigAARDJA000000000SAMN11008341
AUSMDU00014288
GCA_011898985.1ContigAARDJJ000000000SAMN11008159
AUSMDU00014280
GCA_011898945.1ContigAARDIW000000000SAMN11008170
AUSMDU00014308
GCA_011898925.1ContigAARDJT000000000SAMN11008158
AUSMDU00014279
GCA_011898905.1ContigAARDIS000000000SAMN11008378
AUSMDU00014386
GCA_011898885.1ContigAARDIX000000000SAMN11008102
AUSMDU00014183
GCA_011898865.1ContigAARDIU000000000SAMN11008163
AUSMDU00014293
GCA_011898845.1ContigAARDIZ000000000SAMN11008376
AUSMDU00014049
GCA_011898825.1ContigAARDKK000000000SAMN11008214
AUSMDU00014299
GCA_011898805.1ContigAARDJL000000000SAMN11008254
AUSMDU00014075
GCA_011898785.1ContigAARDIV000000000SAMN11008167
AUSMDU00014305
GCA_011898765.1ContigAARDJM000000000SAMN11008200
AUSMDU00014394
GCA_011898745.1ContigAARDIY000000000SAMN11008160
AUSMDU00014285
GCA_011898725.1ContigAARDIR000000000SAMN11008173
AUSMDU00014312
GCA_011898705.1ContigAARDIN000000000SAMN11008062
AUSMDU00014088
GCA_011898685.1ContigAARDJF000000000SAMN11008035
AUSMDU00014103
GCA_011898665.1ContigAARDIP000000000SAMN11008168
AUSMDU00014306
GCA_011898645.1ContigAARDJE000000000SAMN11008165
AUSMDU00014295
GCA_011898625.1ContigAARDIO000000000SAMN11008250
AUSMDU00014050
GCA_011898605.1ContigAARDIT000000000SAMN11008060
AUSMDU00014086
GCA_011898565.1ContigAARDIQ000000000SAMN11008172
AUSMDU00014311
GCA_011898545.1ContigAARDIL000000000SAMN11008056
AUSMDU00014081
GCA_011898525.1ContigAARDIG000000000SAMN11008252
AUSMDU00014057
GCA_011898505.1ContigAARDJD000000000SAMN11008100
AUSMDU00014178
GCA_011898465.1ContigAARDIH000000000SAMN11008064
AUSMDU00014090
GCA_011898435.1ContigAARDIM000000000SAMN11008112
AUSMDU00014206
GCA_011898425.1ContigAARDID000000000SAMN11008287
AUSMDU00014042
GCA_011898385.1ContigAARDJK000000000SAMN11008099
AUSMDU00014176
GCA_011898205.1ContigAARDIJ000000000SAMN11008262
AUSMDU00014160
GCA_011897985.1ContigAARDIK000000000SAMN11008248
AUSMDU00014392
GCA_011897825.1ContigAARDGY000000000SAMN11008247
AUSMDU00014335
GCA_011897725.1ContigAARDGX000000000SAMN11008174
AUSMDU00014313
GCA_011897625.1ContigAARDHA000000000SAMN11008337
AUSMDU00014066
GCA_011897525.1ContigAARDGI000000000SAMN11008288
AUSMDU00014044
GCA_011897355.1ContigAARDGK000000000SAMN11008109
AUSMDU00014197
GCA_011897335.1ContigAARDGL000000000SAMN11008289
AUSMDU00014356
GCA_011897865.1ContigAARDGW000000000SAMN11008291
AUSMDU00014099
GCA_011897805.1ContigAARDHB000000000SAMN11008169
AUSMDU00014307
GCA_011897765.1ContigAARDHC000000000SAMN11008171
AUSMDU00014309
GCA_011897735.1ContigAARDGU000000000SAMN11008340
AUSMDU00014181
GCA_011897705.1ContigAARDGV000000000SAMN11008343
AUSMDU00014352
GCA_011897685.1ContigAARDGR000000000SAMN11008063
AUSMDU00014089
GCA_011897605.1ContigAARDGT000000000SAMN11008246
AUSMDU00014121
GCA_011897585.1ContigAARDGH000000000SAMN11008061
AUSMDU00014087
GCA_011897545.1ContigAARDGP000000000SAMN11008338
AUSMDU00014366
GCA_011897445.1ContigAARDGS000000000SAMN11008251
AUSMDU00014055
GCA_011897485.1ContigAARDGO000000000SAMN11008336
AUSMDU00014125
GCA_011908765.1ContigAARDVJ000000000SAMN10967807
AUSMDU00021396
GCA_011908745.1ContigAARDVL000000000SAMN10967798
AUSMDU00021387
GCA_011908725.1ContigAARDVH000000000SAMN10967730
AUSMDU00005158
GCA_011908705.1ContigAARDVI000000000SAMN10967816
AUSMDU00021405
GCA_011908685.1ContigAARDVG000000000SAMN10967780
AUSMDU00015337
GCA_011908665.1ContigAARDVC000000000SAMN10967787
AUSMDU00015344
GCA_011908645.1ContigAARDVF000000000SAMN10967732
AUSMDU00005161
GCA_011908625.1ContigAARDVE000000000SAMN10967814
AUSMDU00021403
GCA_011908605.1ContigAARDVA000000000SAMN10967727
AUSMDU00005138
GCA_011908585.1ContigAARDVD000000000SAMN10967811
AUSMDU00021400
GCA_011908565.1ContigAARDUZ000000000SAMN10967813
AUSMDU00021402
GCA_011908545.1ContigAARDVB000000000SAMN10967726
AUSMDU00003211
GCA_011908525.1ContigAARDUV000000000SAMN10967728
AUSMDU00005139
GCA_011908495.1ContigAARDUW000000000SAMN10967820
AUSMDU00021409
GCA_011908485.1ContigAARDUX000000000SAMN10967838
AUSMDU00015348
GCA_011908465.1ContigAARDUS000000000SAMN10967789
AUSMDU00015345
GCA_011908425.1ContigAARDUY000000000SAMN10967788
AUSMDU00021622
GCA_011908435.1ContigAARDUT000000000SAMN10967827
AUSMDU00016781
GCA_011908405.1ContigAARDUO000000000SAMN10967809
AUSMDU00021398
GCA_011908365.1ContigAARDVM000000000SAMN10967795
AUSMDU00021384
GCA_011908385.1ContigAARDUR000000000SAMN10967736
AUSMDU00005212
GCA_011908345.1ContigAARDUQ000000000SAMN10967786
AUSMDU00015343
GCA_011908305.1ContigAARDUU000000000SAMN10967735
AUSMDU00005211
GCA_011908315.1ContigAARDVK000000000SAMN10967844
AUSMDU00021629
GCA_011908285.1ContigAARDUP000000000SAMN10967839
AUSMDU00021625
GCA_011908265.1ContigAARDUN000000000SAMN10967801
AUSMDU00021390
GCA_011908245.1ContigAARDVN000000000SAMN10967836
AUSMDU00015347
GCA_011908225.1ContigAARDQV000000000SAMN11008141
AUSMDU00014243
GCA_011908205.1ContigAARDUL000000000SAMN10967729
AUSMDU00005156
GCA_011908185.1ContigAARDQS000000000SAMN11008077
AUSMDU00014110
GCA_011908165.1ContigAARDQX000000000SAMN11008230
AUSMDU00014138
GCA_011908145.1ContigAARDQY000000000SAMN11008027
AUSMDU00014249
GCA_011908125.1ContigAARDQR000000000SAMN11008086
AUSMDU00014130
GCA_011908095.1ContigAARDQT000000000SAMN11008185
AUSMDU00014348
GCA_011908065.1ContigAARDQW000000000SAMN11008138
AUSMDU00014237
GCA_011908045.1ContigAARDQU000000000SAMN11008081
AUSMDU00014114
GCA_011908025.1ContigAARDQP000000000SAMN11008123
AUSMDU00014218
GCA_011908005.1ContigAARDQN000000000SAMN11008110
AUSMDU00014203
GCA_011907985.1ContigAARDQQ000000000SAMN11008116
AUSMDU00014211
GCA_011907945.1ContigAARDQB000000000SAMN11008232
AUSMDU00014291
GCA_011907965.1ContigAARDQO000000000SAMN11008087
AUSMDU00014131
GCA_011907925.1ContigAARDPY000000000SAMN11008357
AUSMDU00014238
GCA_011907905.1ContigAARDQD000000000SAMN11008356
AUSMDU00014236
GCA_011907885.1ContigAARDPS000000000SAMN11008053
AUSMDU00014076
GCA_011907865.1ContigAARDPQ000000000SAMN11008117
AUSMDU00014212
GCA_011907845.1ContigAARDPU000000000SAMN11008145
AUSMDU00014247
GCA_011907825.1ContigAARDPT000000000SAMN11008228
AUSMDU00014382
GCA_011907805.1ContigAARDPO000000000SAMN11008226
AUSMDU00014378
GCA_011907785.1ContigAARDPR000000000SAMN11008233
AUSMDU00014371
GCA_011907745.1ContigAARDPM000000000SAMN11008359
AUSMDU00014240
GCA_011907765.1ContigAARDPN000000000SAMN11008033
AUSMDU00014265
GCA_011907725.1ContigAARDQG000000000SAMN11008125
AUSMDU00014220
GCA_011907705.1ContigAARDQC000000000SAMN11008124
AUSMDU00014219
GCA_011907645.1ContigAARDQJ000000000SAMN11008229
AUSMDU00014383
GCA_011907685.1ContigAARDPK000000000SAMN11008032
AUSMDU00014260
GCA_011907655.1ContigAARDPJ000000000SAMN11008046
AUSMDU00014060
GCA_011907625.1ContigAARDQM000000000SAMN11008049
AUSMDU00014065
GCA_011907605.1ContigAARDPP000000000SAMN11008272
AUSMDU00014334
GCA_011907585.1ContigAARDPL000000000SAMN11008202
AUSMDU00014396
GCA_011907565.1ContigAARDPH000000000SAMN11008076
AUSMDU00014108
GCA_011907525.1ContigAARDQK000000000SAMN11008280
AUSMDU00014161
GCA_011907545.1ContigAARDQL000000000SAMN11008234
AUSMDU00014071
GCA_011907505.1ContigAARDOZ000000000SAMN11008142
AUSMDU00014244
GCA_011907485.1ContigAARDPB000000000SAMN11008364
AUSMDU00014282
GCA_011907455.1ContigAARDPF000000000SAMN11008140
AUSMDU00014242
GCA_011907445.1ContigAARDPC000000000SAMN11008082
AUSMDU00014115
GCA_011907425.1ContigAARDOX000000000SAMN11008120
AUSMDU00014215
GCA_011907405.1ContigAARDPI000000000SAMN11008227
AUSMDU00014381
GCA_011907385.1ContigAARDOY000000000SAMN11008302
AUSMDU00014342
GCA_011907365.1ContigAARDOT000000000SAMN11008034
AUSMDU00014266
GCA_011907345.1ContigAARDOV000000000SAMN11008267
AUSMDU00014287
GCA_011907325.1ContigAARDOW000000000SAMN11008271
AUSMDU00014332
GCA_011907305.1ContigAARDOU000000000SAMN11008083
AUSMDU00014116
GCA_011907285.1ContigAARDOS000000000SAMN11008079
AUSMDU00014112
GCA_011907265.1ContigAARDQH000000000SAMN11008184
AUSMDU00014347
GCA_011907245.1ContigAARDOR000000000SAMN11008270
AUSMDU00014326
GCA_011907225.1ContigAARDQI000000000SAMN11008054
AUSMDU00014077
GCA_011907185.1ContigAARDOQ000000000SAMN11008029
AUSMDU00014257
GCA_011907165.1ContigAARDQF000000000SAMN11008144
AUSMDU00014246
GCA_011907205.1ContigAARDOP000000000SAMN11008358
AUSMDU00014239
GCA_011907125.1ContigAARDOM000000000SAMN11008078
AUSMDU00014111
GCA_011907105.1ContigAARDOD000000000SAMN11008040
AUSMDU00014046
GCA_011907145.1ContigAARDOG000000000SAMN11008268
AUSMDU00014302
GCA_011907085.1ContigAARDPA000000000SAMN11008122
AUSMDU00014217
GCA_011907045.1ContigAARDOC000000000SAMN11008273
AUSMDU00014367
GCA_011907055.1ContigAARDOF000000000SAMN11008045
AUSMDU00014059
GCA_011906985.1ContigAARDOA000000000SAMN11008031
AUSMDU00014259
GCA_011907025.1ContigAARDOL000000000SAMN11008085
AUSMDU00014128
GCA_011907005.1ContigAARDOB000000000SAMN11008266
AUSMDU00014281
GCA_011906965.1ContigAARDOJ000000000SAMN11008135
AUSMDU00014231
GCA_011906945.1ContigAARDNW000000000SAMN11008367
AUSMDU00014289
GCA_011906925.1ContigAARDOE000000000SAMN11008028
AUSMDU00014250
GCA_011906885.1ContigAARDON000000000SAMN11008080
AUSMDU00014113
GCA_011906905.1ContigAARDNS000000000SAMN11008036
AUSMDU00014133
GCA_011906845.1ContigAARDPE000000000SAMN11008191
AUSMDU00014362
GCA_011906865.1ContigAARDNQ000000000SAMN11008366
AUSMDU00014284
GCA_011906825.1ContigAARDNP000000000SAMN11008115
AUSMDU00014210
GCA_011906805.1ContigAARDNY000000000SAMN11008188
AUSMDU00014355
GCA_011906785.1ContigAARDNT000000000SAMN11008043
AUSMDU00014053
GCA_011906765.1ContigAARDNR000000000SAMN11008257
AUSMDU00014098
GCA_011906745.1ContigAARDQE000000000SAMN11008235
AUSMDU00014179
GCA_011906725.1ContigAARDNZ000000000SAMN11008084
AUSMDU00014124
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