freshwater metagenome (ID 323575) - BioProject

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Accession: PRJNA323575 ID: 323575

freshwater metagenome

Groundwater-derived drinking water system

An integrated analysis of microbial community structure and functionalities in a groundwater-derived drinking water system. More...

Accession	PRJNA323575
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	freshwater metagenome[Taxonomy ID: 449393] unclassified sequences; metagenomes; ecological metagenomes; freshwater metagenome
Publications	Zhang Y et al., "Benefits of Genomic Insights and CRISPR-Cas Signatures to Monitor Potential Pathogens across Drinking Water Production and Distribution Systems.", Front Microbiol, 2017;8:2036
Submission	Registration date: 17-Nov-2017 University of Illinois at Urbana-Champaign
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	8528
WGS master	178
SRA Experiments	48
Protein Sequences	111841
Publications
PubMed	1
PMC	1
Other datasets
BioSample	226
Assembly	178

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

178
178

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_013823155.1	PNLQ00000000	SAMN08286372	DS2.011	Accumulibacter sp.
GCA_013822655.1	PNKT00000000	SAMN08286395	PB2.038	Accumulibacter sp.
GCA_013822165.1	PNJZ00000000	SAMN08286415	PR.029	Acinetobacter sp.
GCA_013822495.1	PNKN00000000	SAMN08286401	PB2.3.79	Acinetobacter sp.
GCA_013824125.1	PNNI00000000	SAMN08286328	BC.009	Alcaligenaceae bacterium
GCA_013823245.1	PNLU00000000	SAMN08286368	DS1.3.55	Alcanivorax sp.
GCA_013823825.1	PNMU00000000	SAMN08286342	BC.059	Alphaproteobacteria bacterium
GCA_013824385.1	PNNU00000000	SAMN08286316	SW.3.113	Anaerolinea sp.
GCA_013824805.1	PNOL00000000	SAMN08286299	SW.013	Anaerolinea sp.
GCA_013824745.1	PNOI00000000	SAMN08286302	SW.3.38	Anaerolinea sp.
GCA_013824605.1	PNOD00000000	SAMN08286307	SW.3.73	Anaerolinea sp.
GCA_013824865.1	PNON00000000	SAMN08286297	SW.3.17	Anaerolinea sp.
GCA_013822275.1	PNKC00000000	SAMN08286412	PR.017	Anaerolinea sp.
GCA_013822395.1	PNKK00000000	SAMN08286404	PR.005	Anaerolinea sp.
GCA_013822635.1	PNKU00000000	SAMN08286394	PB2.025	Arthrobacter sp.
GCA_013822885.1	PNLC00000000	SAMN08286386	PB1.002	Bradyrhizobium sp.
GCA_013823285.1	PNLV00000000	SAMN08286367	DS1.3.44	Brevundimonas sp.
GCA_013824305.1	PNNQ00000000	SAMN08286320	SW.3.56	Brevundimonas sp.
GCA_013823725.1	PNMQ00000000	SAMN08286346	BC.3.83	Candidatus Pelagibacter sp.
GCA_013823905.1	PNMY00000000	SAMN08286338	BC.038	Candidatus Puniceispirillum sp.
GCA_013822015.1	PNJU00000000	SAMN08286420	WM.011	Candidatus Puniceispirillum sp.
GCA_013822245.1	PNKE00000000	SAMN08286410	PR.3.38	Candidatus Solibacter sp.
GCA_013823265.1	PNLX00000000	SAMN08286365	DS1.3.45	Chitinophaga sp.
GCA_013823605.1	PNMK00000000	SAMN08286352	FW.022	Chitinophaga sp.
GCA_013823685.1	PNMO00000000	SAMN08286348	FW.010	Chlorobiaceae bacterium
GCA_013824085.1	PNNF00000000	SAMN08286331	BC.017	Chlorobiaceae bacterium
GCA_013824245.1	PNNN00000000	SAMN08286323	SW.3.66	Chlorobiaceae bacterium
GCA_013824375.1	PNNR00000000	SAMN08286319	SW.3.23	Clostridiales bacterium
GCA_013823735.1	PNMP00000000	SAMN08286347	BC.3.98	Comamonadaceae bacterium
GCA_013823655.1	PNMN00000000	SAMN08286349	FW.011	Comamonadaceae bacterium
GCA_013823445.1	PNMD00000000	SAMN08286359	DS1.002	Comamonadaceae bacterium
GCA_013823485.1	PNMF00000000	SAMN08286357	FW.3.54	Comamonadaceae bacterium
GCA_013824685.1	PNOG00000000	SAMN08286304	SW.3.48	Coprothermobacter sp.
GCA_013824215.1	PNNM00000000	SAMN08286324	SW.3.84	Coriobacteriaceae bacterium
GCA_013823185.1	PNLS00000000	SAMN08286370	DS2.008	Cyanobacteria bacterium DS2.008
GCA_013823055.1	PNLN00000000	SAMN08286375	DS2.3.42	Cyanobacteria bacterium DS2.3.42
GCA_013822935.1	PNLJ00000000	SAMN08286379	DS3.002	Cyanobacteria bacterium DS3.002
GCA_013822185.1	PNKA00000000	SAMN08286414	PR.023	Cyanobacteria bacterium PR.023
GCA_013997645.1	PNKB00000000	SAMN08286413	PR.3.49	Cyanobacteria bacterium PR.3.49
GCA_013823925.1	PNMX00000000	SAMN08286339	BC.039	Cyclobacterium sp.
GCA_013821885.1	PNJL00000000	SAMN08286429	WM.3.68	Cytophaga sp.
GCA_013822905.1	PNLF00000000	SAMN08286383	DS3.021	Delftia sp.
GCA_013824495.1	PNNX00000000	SAMN08286313	SW.114	Desulfobacca sp.
GCA_013824585.1	PNOB00000000	SAMN08286309	SW.3.97	Desulfobacterium sp.
GCA_013824525.1	PNNZ00000000	SAMN08286311	SW.068	Desulfovibrio sp.
GCA_013823045.1	PNLK00000000	SAMN08286378	DS3.001	Erythrobacter sp.
GCA_013823025.1	PNLL00000000	SAMN08286377	DS2.3.47	Erythrobacter sp.
GCA_013822695.1	PNKW00000000	SAMN08286392	PB2.004	Erythrobacter sp.
GCA_013822445.1	PNKM00000000	SAMN08286402	PR.003	Erythrobacter sp.
GCA_013822125.1	PNJY00000000	SAMN08286416	WM.002	Erythrobacter sp.
GCA_013822025.1	PNJR00000000	SAMN08286423	WM.3.51	Erythrobacter sp.
GCA_013822155.1	PNJW00000000	SAMN08286418	WM.006	Flavobacterium sp.
GCA_013821805.1	PNJJ00000000	SAMN08286431	WM.3.56	Flavobacterium sp.
GCA_013823965.1	PNNA00000000	SAMN08286336	BC.034	Flavobacterium sp.
GCA_013824365.1	PNNS00000000	SAMN08286318	SW.3.132	Flavobacterium sp.
GCA_013822035.1	PNJS00000000	SAMN08286422	WM.3.45	Gemmatimonas sp.
GCA_013822285.1	PNKF00000000	SAMN08286409	PR.013	Gemmatimonas sp.
GCA_013822425.1	PNKL00000000	SAMN08286403	PR.004	Gemmatimonas sp.
GCA_013824755.1	PNOJ00000000	SAMN08286301	SW.020	Gemmatimonas sp.
GCA_013822805.1	PNLA00000000	SAMN08286388	PB1.006	Gordonia sp. (in: high G+C Gram-positive bacteria)
GCA_013821915.1	PNJP00000000	SAMN08286425	WM.3.50	Hyphomicrobium sp.
GCA_013822135.1	PNJX00000000	SAMN08286417	WM.005	Hyphomicrobium sp.
GCA_002928515.1	PERI00000000	SAMN07958388	PB1.3.35	Hyphomicrobium sp.
GCA_002928465.1	PERA00000000	SAMN07958396	WM.3.63	Hyphomicrobium sp.
GCA_002928955.1	PERT00000000	SAMN07958377	FW.3.32	Hyphomicrobium sp.
GCA_002928735.1	PERL00000000	SAMN07958385	DS3.3.23	Hyphomicrobium sp.
GCA_002928395.1	PEQZ00000000	SAMN07958397	WM.3.5	Hyphomicrobium sp.
GCA_013824195.1	PNNJ00000000	SAMN08286327	BC.008	Hyphomonas sp.
GCA_013823385.1	PNMA00000000	SAMN08286362	DS1.007	Hyphomonas sp.
GCA_013823195.1	PNLT00000000	SAMN08286369	DS1.3.56	Idiomarina sp.
GCA_013822345.1	PNKH00000000	SAMN08286407	PR.3.33	Isosphaera sp.
GCA_013822085.1	PNJV00000000	SAMN08286419	WM.009	Isosphaera sp.
GCA_013822525.1	PNKP00000000	SAMN08286399	PB2.3.49	Kytococcus sp.
GCA_002786245.1	PEQJ00000000	SAMN07572181	BC.3.64	Legionella sp.
GCA_002786205.1	PEQM00000000	SAMN07572184	FW.3.37	Legionella sp.
GCA_002786165.1	PEQK00000000	SAMN07572182	BC.3.72	Legionella sp.
GCA_002786095.1	PEQQ00000000	SAMN07572188	DS3.009	Legionella sp.
GCA_002786225.1	PEQN00000000	SAMN07572185	FW.030	Leptospira sp.
GCA_013822685.1	PNKV00000000	SAMN08286393	PB2.3.27	Leptothrix sp. (in: b-proteobacteria)
GCA_013822265.1	PNKD00000000	SAMN08286411	PR.3.46	Leptothrix sp. (in: b-proteobacteria)
GCA_013823855.1	PNMW00000000	SAMN08286340	BC.045	Lysobacteraceae bacterium
GCA_013822595.1	PNKS00000000	SAMN08286396	PB2.047	Marivirga sp.
GCA_013823315.1	PNLW00000000	SAMN08286366	DS1.3.36	Methylibium sp.
GCA_013824165.1	PNNH00000000	SAMN08286329	BC.012	Methylibium sp.
GCA_002929095.1	PESA00000000	SAMN07958370	BC.3.60	Methylobacter sp.
GCA_002929035.1	PERX00000000	SAMN07958373	BC.3.94	Methylobacter sp.
GCA_002928745.1	PERK00000000	SAMN07958386	DS3.3.25	Methylobacter sp.
GCA_002928915.1	PERP00000000	SAMN07958381	DS2.3.46	Methylobacter sp.
GCA_002928495.1	PERF00000000	SAMN07958391	WM.3.3	Methylobacter sp.
GCA_013824255.1	PNNK00000000	SAMN08286326	BC.007	Methylobacterium sp.
GCA_013823585.1	PNMJ00000000	SAMN08286353	FW.024	Methylobacterium sp.
GCA_013823325.1	PNLY00000000	SAMN08286364	DS1.3.43	Methylobacterium sp.
GCA_002928875.1	PERO00000000	SAMN07958382	DS2.3.33	Methylobacterium sp.
GCA_002928795.1	PERD00000000	SAMN07958393	WM.007	Methylocystis sp.
GCA_002928805.1	PERJ00000000	SAMN07958387	PB1.005	Methylocystis sp.
GCA_002929055.1	PERY00000000	SAMN07958372	BC.3.87	Methylocystis sp.
GCA_002928995.1	PERV00000000	SAMN07958375	FW.017	Methylomonas sp.
GCA_002929015.1	PERW00000000	SAMN07958374	FW.001	Methylomonas sp.
GCA_002928965.1	PERU00000000	SAMN07958376	FW.007	Methylomonas sp.
GCA_002929135.1	PESC00000000	SAMN07958368	BC.006	Methylomonas sp.
GCA_002928855.1	PERQ00000000	SAMN07958380	DS2.3.37	Methylomonas sp.
GCA_002928895.1	PERR00000000	SAMN07958379	DS1.3.54	Methylomonas sp.
GCA_002928935.1	PERS00000000	SAMN07958378	DS1.022	Methylomonas sp.
GCA_002928825.1	PERN00000000	SAMN07958383	DS2.3.36	Methylophilus sp.
GCA_002928775.1	PERM00000000	SAMN07958384	DS3.004	Methylotenera sp.
GCA_002928455.1	PERC00000000	SAMN07958394	WM.3.38	Methylotenera sp.
GCA_002928435.1	PERE00000000	SAMN07958392	WM.008	Methylotenera sp.
GCA_002928405.1	PERB00000000	SAMN07958395	WM.3.39	Methylotenera sp.
GCA_002928535.1	PERG00000000	SAMN07958390	PB2.3.53	Methylotenera sp.
GCA_002928555.1	PERH00000000	SAMN07958389	PB2.3.30	Methylotenera sp.
GCA_002929115.1	PESB00000000	SAMN07958369	BC.005	Methylotenera sp.
GCA_002929155.1	PESD00000000	SAMN07958367	BC.032	Methylotenera sp.
GCA_002929075.1	PERZ00000000	SAMN07958371	BC.3.50	Methylotenera sp.
GCA_013823625.1	PNMM00000000	SAMN08286350	FW.016	Microbacterium sp.
GCA_013824105.1	PNNL00000000	SAMN08286325	BC.004	Microbacterium sp.
GCA_002786125.1	PEQO00000000	SAMN07572186	DS1.3.26	Mycobacterium sp.
GCA_002786135.1	PEQP00000000	SAMN07572187	DS2.013	Mycobacterium sp.
GCA_002786085.1	PEQR00000000	SAMN07572189	PR.002	Mycobacterium sp.
GCA_013824915.1	PNOQ00000000	SAMN08286294	SW.3.93	Nanoarchaeum sp.
GCA_013822005.1	PNJT00000000	SAMN08286421	WM.015	Novosphingobium sp.
GCA_013822565.1	PNKR00000000	SAMN08286397	PB2.3.29	Novosphingobium sp.
GCA_013824445.1	PNNV00000000	SAMN08286315	SW.124	Novosphingobium sp.
GCA_013824465.1	PNNW00000000	SAMN08286314	SW.120	Odoribacter sp.
GCA_013824715.1	PNOH00000000	SAMN08286303	SW.3.41	Odoribacter sp.
GCA_013822585.1	PNKG00000000	SAMN08286408	PR.011	Opitutus sp.
GCA_013821985.1	PNJQ00000000	SAMN08286424	WM.026	Opitutus sp.
GCA_002786175.1	PEQL00000000	SAMN07572183	BC.030	Parachlamydia sp.
GCA_013823365.1	PNMC00000000	SAMN08286360	DS1.004	Parvibaculum sp.
GCA_013822795.1	PNLB00000000	SAMN08286387	PB1.003	Phenylobacterium sp.
GCA_013822735.1	PNKZ00000000	SAMN08286389	PB1.007	Pirellula sp.
GCA_013822725.1	PNKX00000000	SAMN08286391	PB1.3.31	Pirellula sp.
GCA_013822855.1	PNLE00000000	SAMN08286384	DS3.3.33	Planctomyces sp.
GCA_013822975.1	PNLH00000000	SAMN08286381	DS3.008	Planctomyces sp.
GCA_013823105.1	PNLO00000000	SAMN08286374	DS2.017	Planctomyces sp.
GCA_013823135.1	PNLP00000000	SAMN08286373	DS2.012	Planctomycetaceae bacterium
GCA_013823635.1	PNML00000000	SAMN08286351	FW.019	Polaromonas sp.
GCA_013823505.1	PNMH00000000	SAMN08286355	FW.3.43	Polaromonas sp.
GCA_013824015.1	PNNC00000000	SAMN08286334	BC.025	Polaromonas sp.
GCA_013823305.1	PNLZ00000000	SAMN08286363	DS1.011	Polymorphum sp.
GCA_013823455.1	PNME00000000	SAMN08286358	DS1.001	Pseudomonas sp.
GCA_013823775.1	PNMR00000000	SAMN08286345	BC.3.70	Pseudomonas sp.
GCA_013823765.1	PNMS00000000	SAMN08286344	BC.3.46	Pseudomonas sp.
GCA_013824355.1	PNNT00000000	SAMN08286317	SW.3.119	Pseudomonas sp.
GCA_013823215.1	PNLR00000000	SAMN08286371	DS2.009	Ralstonia sp.
GCA_013822845.1	PNLD00000000	SAMN08286385	DS3.3.4	Ralstonia sp.
GCA_013824635.1	PNOE00000000	SAMN08286306	SW.3.57	Ralstonia sp.
GCA_013823805.1	PNMT00000000	SAMN08286343	BC.3.105	Ralstonia sp.
GCA_013823845.1	PNMV00000000	SAMN08286341	BC.055	Ralstonia sp.
GCA_013823415.1	PNMB00000000	SAMN08286361	DS1.005	Ralstonia sp.
GCA_013823495.1	PNMG00000000	SAMN08286356	FW.028	Ralstonia sp.
GCA_013821825.1	PNJK00000000	SAMN08286430	WM.3.37	Rhodobacter sp.
GCA_013824055.1	PNNE00000000	SAMN08286332	BC.019	Rhodobacter sp.
GCA_013824045.1	PNND00000000	SAMN08286333	BC.021	Rhodobacter sp.
GCA_013821865.1	PNJM00000000	SAMN08286428	WM.039	Rhodocyclaceae bacterium
GCA_013822765.1	PNKY00000000	SAMN08286390	PB1.008	Rhodospirillum sp.
GCA_013824485.1	PNNY00000000	SAMN08286312	SW.3.112	Sideroxydans sp.
GCA_013824115.1	PNNG00000000	SAMN08286330	BC.015	Sphingobacteriaceae bacterium
GCA_013823565.1	PNMI00000000	SAMN08286354	FW.025	Sphingobacteriaceae bacterium
GCA_013822485.1	PNKO00000000	SAMN08286400	PB2.3.55	Sphingobium sp.
GCA_013822355.1	PNKI00000000	SAMN08286406	PR.007	Sphingobium sp.
GCA_013822965.1	PNLI00000000	SAMN08286380	DS3.003	Sphingobium sp.
GCA_013822915.1	PNLG00000000	SAMN08286382	DS3.010	Sphingomonas sp.
GCA_013821905.1	PNJO00000000	SAMN08286426	WM.032	Sphingopyxis sp.
GCA_013823985.1	PNNB00000000	SAMN08286335	BC.033	Sphingopyxis sp.
GCA_013824645.1	PNOF00000000	SAMN08286305	SW.3.55	Syntrophus sp. (in: bacteria)
GCA_013824765.1	PNOK00000000	SAMN08286300	SW.017	Syntrophus sp. (in: bacteria)
GCA_013824835.1	PNOM00000000	SAMN08286298	SW.010	Syntrophus sp. (in: bacteria)
GCA_013824905.1	PNOO00000000	SAMN08286296	SW.007	Syntrophus sp. (in: bacteria)
GCA_013824615.1	PNOC00000000	SAMN08286308	SW.3.86	Thermodesulfovibrio sp.
GCA_013824325.1	PNNP00000000	SAMN08286321	SW.3.61	Thermodesulfovibrio sp.
GCA_013823075.1	PNLM00000000	SAMN08286376	DS2.3.45	Verminephrobacter sp.
GCA_013822535.1	PNKQ00000000	SAMN08286398	PB2.3.40	Verminephrobacter sp.
GCA_013824545.1	PNOA00000000	SAMN08286310	SW.3.111	Verrucomicrobiota bacterium
GCA_013821895.1	PNJN00000000	SAMN08286427	WM.035	Xanthomonas sp.
GCA_013822385.1	PNKJ00000000	SAMN08286405	PR.006	Zymomonas sp.
GCA_013824265.1	PNNO00000000	SAMN08286322	SW.3.65	bacterium
GCA_013823945.1	PNMZ00000000	SAMN08286337	BC.035	bacterium
GCA_013824875.1	PNOP00000000	SAMN08286295	SW.003	bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	3
Data volume, Mbytes	2119

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freshwater metagenome

Groundwater-derived drinking water system

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