Salmonella enterica (ID 338682) - BioProject

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Accession: PRJNA338682 ID: 338682

Salmonella enterica

GenomeTrakr Project: State Hygienic Laboratory at the University of Iowa

See Genome Information for Salmonella enterica

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This project is a component of the GenomeTrakr umbrella project for Salmonella enterica

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3959 additional projects are related by organism.

75 additional projects are components of the GenomeTrakr umbrella project for Salmonella enterica.

Whole genome sequencing of cultured Salmonella as part of the US Food and Drug Administration's WGS surveillance effort for the rapid traceback of foodborne pathogens.

Accession	PRJNA338682
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Salmonella enterica[Taxonomy ID: 28901] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica
Submission	Registration date: 4-Jun-2019 FDA
Related Resources	State Hygienic Laboratory at the University of Iowa
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	109
SRA Experiments	111
Other datasets
BioSample	111
Assembly	109

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

109
109

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_035827935.1	ABPVVO000000000	SAMN39471203	IA-2373849	Salmonella enterica subsp. enterica serovar Infantis
GCA_030906945.1	ABLROP000000000	SAMN34250430	IA-2254217	Salmonella enterica subsp. enterica serovar Apapa
GCA_030906905.1	ABLROO000000000	SAMN34250431	IA-2254589	Salmonella enterica subsp. enterica serovar Apapa
GCA_016336515.1	AAYGNO000000000	SAMN05603740	IA-2011107414	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_016336415.1	AAYGNN000000000	SAMN05755773	IA-2008105569	Salmonella enterica
GCA_016336395.1	AAYGNR000000000	SAMN05603742	IA-2013111950	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_016324665.1	AAYFSL000000000	SAMN05755775	IA-2011088535	Salmonella enterica
GCA_006103275.1	AAEPCO000000000	SAMN06040372	IA-2008073409	Salmonella enterica
GCA_006099865.1	AAEOXH000000000	SAMN05829261	IA-2009109914	Salmonella enterica
GCA_006033975.1	AAEKBP000000000	SAMN05829262	IA-2009103005	Salmonella enterica
GCA_006033455.1	AAEKAR000000000	SAMN05755781	IA-2011044481	Salmonella enterica
GCA_006032155.1	AAEJZC000000000	SAMN05560712	IA_2012062796	Salmonella enterica
GCA_006069915.1	AAEMSL000000000	SAMN07351358	IA-2011109305	Salmonella enterica
GCA_006064335.1	AAEMHR000000000	SAMN07279398	IA-2010111613	Salmonella enterica
GCA_005972785.1	AAEFPA000000000	SAMN05755774	IA-2008105568	Salmonella enterica
GCA_005972765.1	AAEFOY000000000	SAMN05755768	IA-2009098603	Salmonella enterica
GCA_005972725.1	AAEFQC000000000	SAMN05829260	IA-2009124971	Salmonella enterica
GCA_005972705.1	AAEFPC000000000	SAMN05755767	IA-2010055692	Salmonella enterica
GCA_025632965.1	ABISJC000000000	SAMN31209321	IA-2129533	Salmonella enterica subsp. enterica serovar Cerro
GCA_025675585.1	ABITTD000000000	SAMN31262487	IA-2121074	Salmonella enterica subsp. enterica serovar Johannesburg
GCA_025675565.1	ABITTE000000000	SAMN31262488	IA-2121075	Salmonella enterica subsp. enterica serovar Soerenga
GCA_025675505.1	ABITTA000000000	SAMN31262484	IA-2117751	Salmonella enterica subsp. enterica serovar Schwarzengrund
GCA_025675485.1	ABITTB000000000	SAMN31262485	IA-2117752	Salmonella enterica subsp. enterica serovar Infantis
GCA_025675465.1	ABITTC000000000	SAMN31262486	IA-2117753	Salmonella enterica subsp. enterica serovar Cerro
GCA_025675445.1	ABITSZ000000000	SAMN31262483	IA-2117750	Salmonella enterica subsp. enterica serovar Senftenberg
GCA_025471255.1	ABIMXB000000000	SAMN31064279	IA-2129530	Salmonella enterica subsp. enterica serovar Cerro
GCA_025471035.1	ABIMWP000000000	SAMN31064281	IA-2129532	Salmonella enterica subsp. enterica serovar Infantis
GCA_025471015.1	ABIMWQ000000000	SAMN31064282	IA-2129534	Salmonella enterica subsp. enterica serovar Muenster
GCA_025469795.1	ABIMUL000000000	SAMN31064280	IA-2129531	Salmonella enterica subsp. enterica serovar Liverpool
GCA_025886885.1	ABJBDR000000000	SAMN31484242	IA-2159540	Salmonella enterica subsp. enterica serovar Kentucky
GCA_025886105.1	ABJBCF000000000	SAMN31484241	IA-2159538	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_025886075.1	ABJBCE000000000	SAMN31484246	IA-2176371	Salmonella enterica subsp. enterica serovar Kentucky
GCA_025886065.1	ABJBCG000000000	SAMN31484240	IA-2137991	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_025886045.1	ABJBCD000000000	SAMN31484237	IA-2136553	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_025886025.1	ABJBCH000000000	SAMN31484239	IA-2136555	Salmonella enterica subsp. enterica serovar Infantis
GCA_025886005.1	ABJBCB000000000	SAMN31484236	IA-2136547	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_025886305.1	ABJBCR000000000	SAMN31484238	IA-2136554	Salmonella enterica subsp. enterica serovar Infantis
GCA_025886285.1	ABJBCS000000000	SAMN31484245	IA-2176365	Salmonella enterica subsp. enterica serovar Infantis
GCA_025886205.1	ABJBCL000000000	SAMN31484244	IA-2159544	Salmonella enterica subsp. enterica serovar Infantis
GCA_025886345.1	ABJBCQ000000000	SAMN31484243	IA-2159543	Salmonella enterica subsp. enterica serovar Infantis
GCA_025954345.1	ABJCUC000000000	SAMN31537770	IA-2176378	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_025954305.1	ABJCTZ000000000	SAMN31537769	IA-2176364	Salmonella enterica subsp. enterica serovar Infantis
GCA_039657525.1	ABSFJQ000000000	SAMN41422629	24041106-01-G	Salmonella enterica subsp. enterica serovar Oranienburg
GCA_039949595.1	ABSOXJ000000000	SAMN41592260	24041106-01-E	Salmonella enterica subsp. enterica serovar Oranienburg
GCA_039728865.1	ABSIRZ000000000	SAMN41422628	24041106-01-A	Salmonella enterica subsp. enterica serovar Oranienburg
GCA_007230555.1	AAHJMM000000000	SAMN05603733	IA-2010122881	Salmonella enterica subsp. enterica serovar Kentucky
GCA_007032165.1	AAGXHA000000000	SAMN07351344	IA-2010080727	Salmonella enterica
GCA_006929455.1	AAGQLN000000000	SAMN05829264	IA-2009083852	Salmonella enterica
GCA_006922415.1	AAGPVO000000000	SAMN05829263	IA-2009099254	Salmonella enterica
GCA_006911745.1	AAGPCK000000000	SAMN05755779	IA-2011064306	Salmonella enterica
GCA_006911645.1	AAGPCM000000000	SAMN05755766	IA-2010055693	Salmonella enterica
GCA_006911285.1	AAGPBF000000000	SAMN05755778	IA-2011066987	Salmonella enterica
GCA_006911225.1	AAGPBI000000000	SAMN05755769	IA-2008133830	Salmonella enterica
GCA_006911205.1	AAGPBK000000000	SAMN05755770	IA-2008133829	Salmonella enterica
GCA_006911165.1	AAGPBC000000000	SAMN05755772	IA-2008105570	Salmonella enterica
GCA_006911125.1	AAGPBD000000000	SAMN05755780	IA-2011060617	Salmonella enterica
GCA_006910665.1	AAGPCI000000000	SAMN05755777	IA-2011083446	Salmonella enterica
GCA_006910505.1	AAGPCG000000000	SAMN05755771	IA-2008114772	Salmonella enterica
GCA_006910365.1	AAGPCH000000000	SAMN05755776	IA-2011083447	Salmonella enterica
GCA_006908985.1	AAGOXI000000000	SAMN05560713	IA_2012062795	Salmonella enterica
GCA_010410445.1	AANRUC000000000	SAMN05948800	IA-431538	Salmonella enterica subsp. enterica serovar Mbandaka
GCA_010408075.1	AANRRS000000000	SAMN05560721	IA_328756	Salmonella enterica subsp. enterica serovar Reading
GCA_010789055.1	AAOMSQ000000000	SAMN05560723	IA_245457	Salmonella enterica subsp. enterica serovar Mbandaka
GCA_010763355.1	AAONAW000000000	SAMN06040364	IA-2011071215	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_011105395.1	AAPHDJ000000000	SAMN05603737	IA-2010101975	Salmonella enterica subsp. enterica serovar Oranienburg
GCA_009027165.1	AALTVD000000000	SAMN06040367	IA-2011052560	Salmonella enterica subsp. enterica serovar Kentucky
GCA_009027145.1	AALTVF000000000	SAMN06040366	IA-2011058535	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_009027185.1	AALTVC000000000	SAMN06040369	IA-2009087138	Salmonella enterica subsp. enterica serovar Kentucky
GCA_009027225.1	AALTVB000000000	SAMN06040363	IA-2009099253	Salmonella enterica subsp. enterica serovar Kentucky
GCA_009351795.1	AAMLXL000000000	SAMN07279055	IA-2013047683	Salmonella enterica subsp. enterica serovar Infantis
GCA_009371075.1	AAMOBR000000000	SAMN07351346	IA-2010008282	Salmonella enterica subsp. enterica serovar Montevideo
GCA_009373515.1	AAMOFO000000000	SAMN07351360	IA-2011083445	Salmonella enterica subsp. enterica serovar Senftenberg
GCA_009336485.1	AAMLXN000000000	SAMN07279054	IA-2013087690	Salmonella enterica subsp. enterica serovar Montevideo
GCA_009336455.1	AAMLXJ000000000	SAMN07279017	IA-2014047415	Salmonella enterica subsp. enterica serovar Muenchen
GCA_009370915.1	AAMOBQ000000000	SAMN07351350	IA-2010104853	Salmonella enterica subsp. enterica serovar Kentucky
GCA_009395325.1	AAMPCT000000000	SAMN07351359	IA-2011100248	Salmonella enterica subsp. enterica serovar Kentucky
GCA_008976625.1	AALRWD000000000	SAMN05829265	IA-2008088318	Salmonella enterica subsp. enterica serovar Montevideo
GCA_008976575.1	AALRWG000000000	SAMN05829267	IA-2009109913	Salmonella enterica subsp. enterica serovar Kentucky
GCA_008976425.1	AALRWB000000000	SAMN05829266	IA-2009154804	Salmonella enterica subsp. enterica serovar Kentucky
GCA_008976365.1	AALRWN000000000	SAMN05829268	IA-2009121617	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_008946905.1	AALPQN000000000	SAMN05603744	IA-2013109379	Salmonella enterica subsp. enterica serovar Montevideo
GCA_008946845.1	AALPPH000000000	SAMN05560710	IA_2012111365	Salmonella enterica subsp. enterica serovar Kentucky
GCA_008946805.1	AALPPO000000000	SAMN05560714	IA_2012048027	Salmonella enterica subsp. enterica serovar Kentucky
GCA_008945645.1	AALPQA000000000	SAMN05603736	IA-2010120056	Salmonella enterica subsp. enterica serovar Kentucky
GCA_008945535.1	AALPPS000000000	SAMN05560720	IA_2010079266	Salmonella enterica subsp. enterica serovar Newport
GCA_008945465.1	AALPPU000000000	SAMN05603738	IA-2010098880	Salmonella enterica subsp. enterica serovar Kentucky
GCA_008945385.1	AALPPP000000000	SAMN05560719	IA_2011077977	Salmonella enterica subsp. enterica serovar Kentucky
GCA_008945345.1	AALPPI000000000	SAMN05560711	IA_2012063893	Salmonella enterica subsp. enterica serovar Kentucky
GCA_008945325.1	AALPPW000000000	SAMN05603739	IA-2010075985	Salmonella enterica subsp. enterica serovar Kentucky
GCA_008944865.1	AALPPZ000000000	SAMN05603741	IA-2014062774	Salmonella enterica subsp. enterica serovar Montevideo
GCA_008944875.1	AALPPX000000000	SAMN05603734	IA-2010120058	Salmonella enterica subsp. enterica serovar Kentucky
GCA_008944825.1	AALPQC000000000	SAMN05603735	IA-2010120057	Salmonella enterica subsp. enterica serovar Kentucky
GCA_008944765.1	AALPPT000000000	SAMN05603770	IA-2010126615	Salmonella enterica subsp. enterica serovar Schwarzengrund
GCA_008944735.1	AALPPV000000000	SAMN05603771	IA-2010126614	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_008944645.1	AALPPL000000000	SAMN05560715	IA_2012045802	Salmonella enterica subsp. enterica serovar Kentucky
GCA_008944565.1	AALPPJ000000000	SAMN05560717	IA_2011111840	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_008944485.1	AALPPF000000000	SAMN05560716	IA_2011125013	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_008944305.1	AALPPQ000000000	SAMN05560718	IA_2011077978	Salmonella enterica subsp. enterica serovar Kentucky
GCA_008944245.1	AALPQO000000000	SAMN05603743	IA-2013111949	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_009026465.1	AALTVJ000000000	SAMN06040360	IA-2011066986	Salmonella enterica subsp. enterica serovar Kentucky
GCA_009027505.1	AALTVI000000000	SAMN06040358	IA-2011079943	Salmonella enterica subsp. enterica serovar Kentucky
GCA_009027445.1	AALTVK000000000	SAMN06040359	IA-2011079942	Salmonella enterica subsp. enterica serovar Kentucky
GCA_009027245.1	AALTVE000000000	SAMN06040370	IA-2008082659	Salmonella enterica subsp. enterica serovar Enteritidis
GCA_009027265.1	AALTVG000000000	SAMN06040365	IA-2011071214	Salmonella enterica subsp. enterica serovar Kentucky
GCA_009036845.1	AALXBG000000000	SAMN06040362	IA-2011064304	Salmonella enterica subsp. enterica serovar Kentucky
GCA_009036885.1	AALXBJ000000000	SAMN06040357	IA-2011083448	Salmonella enterica subsp. enterica serovar Kentucky
GCA_009036855.1	AALXBH000000000	SAMN06040368	IA-2011052559	Salmonella enterica subsp. enterica serovar Kentucky
GCA_009036905.1	AALXBO000000000	SAMN06040361	IA-2011064305	Salmonella enterica subsp. enterica serovar Kentucky
GCA_009036765.1	AALXBF000000000	SAMN06040371	IA-2008082658	Salmonella enterica subsp. enterica serovar Montevideo

SRA Data Details

Parameter	Value
Data volume, Gbases	49
Data volume, Mbytes	31912

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Salmonella enterica

GenomeTrakr Project: State Hygienic Laboratory at the University of Iowa

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