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Accession: PRJEB12926 ID: 344989

Host adaptation in group B Streptococcus

Persistence of a dominant bovine lineage of group B Streptococcus reveals genomic signatures of host adaptation

Group B Streptococcus (GBS) is a host-generalist species, most notably causing disease in humans and cattle. More...
AccessionPRJEB12926; ENA-SUBMISSION: ERA570099
Data TypeGenome sequencing and assembly
ScopeMonoisolate
PublicationsAlmeida A et al., "Persistence of a dominant bovine lineage of group B Streptococcus reveals genomic signatures of host adaptation.", Environ Microbiol, 2016 Nov;18(11):4216-4229
SubmissionRegistration date: 30-Sep-2016
Institut Pasteur
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)22500
WGS master149
Genomic DNA1
SRA Experiments150
Protein Sequences2212
Publications
PubMed1
Other datasets
BioSample150
Assembly150
Assembly details:
Assembly levelNumber of Assemblies
1
149
150
AssemblyLevelWGSChrsBioSampleIsolateTaxonomy
GCA_900073745.1ContigFJQL00000000
SAMEA3888132
SA92
GCA_900074015.1ContigFJRU00000000
SAMEA3888271
VSA119
GCA_900073885.1ContigFJRE00000000
SAMEA3888258
VSA106
GCA_900073895.1ContigFJRJ00000000
SAMEA3888260
VSA108
GCA_900073195.1ContigFJOK00000000
SAMEA3888113
SA67
GCA_900073465.1ContigFJPL00000000
SAMEA3888075
SA11
GCA_900074565.1ContigFJTU00000000
SAMEA3888285
mad35
GCA_900073185.1ContigFJPN00000000
SAMEA3888160
SA120
GCA_900073165.1ContigFJOX00000000
SAMEA3888158
SA118
GCA_900073785.1ContigFJQY00000000
SAMEA3888135
SA95
GCA_900073825.1ContigFJQZ00000000
SAMEA3888252
VSA100
GCA_900074115.1ContigFJSE00000000
SAMEA3888211
VSA6
GCA_900073815.1ContigFJQW00000000
SAMEA3888137
SA97
GCA_900074145.1ContigFJSN00000000
SAMEA3888223
VSA69
GCA_900073975.1ContigFJRS00000000
SAMEA3888267
VSA115
GCA_900074215.1ContigFJSK00000000
SAMEA3888228
VSA74
GCA_900074125.1ContigFJSH00000000
SAMEA3888219
VSA50
GCA_900074315.1ContigFJTP00000000
SAMEA3888237
VSA85
GCA_900073585.1ContigFJPH00000000
SAMEA3888072
SA8
GCA_900073705.1ContigFJQT00000000
SAMEA3888128
SA88
GCA_900073355.1ContigFJOL00000000
SAMEA3888116
SA76
GCA_900073325.1ContigFJOO00000000
SAMEA3888149
SA109
GCA_900074295.1ContigFJST00000000
SAMEA3888235
VSA83
GCA_900073385.1ContigFJOY00000000
SAMEA3888143
SA103
GCA_900073935.1ContigFJRM00000000
SAMEA3888263
VSA111
GCA_900074545.1ContigFJTL00000000
SAMEA3888283
mad33
GCA_900074255.1ContigFJSO00000000
SAMEA3888232
VSA79
GCA_900073565.1ContigFJPZ00000000
SAMEA3888184
SA232
GCA_900073715.1ContigFJQS00000000
SAMEA3888127
SA87
GCA_900073945.1ContigFJRP00000000
SAMEA3888265
VSA113
GCA_900073275.1ContigFJOW00000000
SAMEA3888207
SA325
GCA_900073455.1ContigFJPA00000000
SAMEA3888117
SA77
GCA_900073285.1ContigFJPV00000000
SAMEA3888178
SA223
GCA_900073345.1ContigFJOZ00000000
SAMEA3888169
SA197
GCA_900073765.1ContigFJQU00000000
SAMEA3888138
SA98
GCA_900074035.1ContigFJRR00000000
SAMEA3888213
VSA17
GCA_900074575.1ContigFJTV00000000
SAMEA3888286
mad40
GCA_900074045.1ContigFJRV00000000
SAMEA3888212
VSA16
GCA_900073635.1ContigFJQQ00000000
SAMEA3888122
SA82
GCA_900074455.1ContigFJTJ00000000
SAMEA3888248
VSA96
GCA_900073365.1ContigFJPT00000000
SAMEA3888208
SA368
GCA_900073855.1ContigFJRD00000000
SAMEA3888256
VSA104
GCA_900074085.1ContigFJSB00000000
SAMEA3888210
VSA3
GCA_900073505.1ContigFJPD00000000
SAMEA3888078
SA26
GCA_900073865.1ContigFJRF00000000
SAMEA3888255
VSA103
GCA_900074105.1ContigFJSD00000000
SAMEA3888218
VSA44
GCA_900074385.1ContigFJTA00000000
SAMEA3888245
VSA93
GCA_900073795.1ContigFJQR00000000
SAMEA3888133
SA93
GCA_900074275.1ContigFJSU00000000
SAMEA3888233
VSA80
GCA_900074555.1ContigFJTO00000000
SAMEA3888275
mad3
GCA_900073995.1ContigFJRW00000000
SAMEA3888269
VSA117
GCA_900074285.1ContigFJSV00000000
SAMEA3888236
VSA84
GCA_900074445.1ContigFJTQ00000000
SAMEA3888246
VSA94
GCA_900074075.1ContigFJRZ00000000
SAMEA3888216
VSA29
GCA_900074495.1ContigFJTF00000000
SAMEA3888276
mad11
GCA_900074025.1ContigFJRT00000000
SAMEA3888272
VSA121
GCA_900074265.1ContigFJTG00000000
SAMEA3888231
VSA78
GCA_900073245.1ContigFJOS00000000
SAMEA3888206
SA324
GCA_900074325.1ContigFJTD00000000
SAMEA3888239
VSA87
GCA_900073435.1ContigFJPE00000000
SAMEA3888205
SA323
GCA_900074375.1ContigFJTK00000000
SAMEA3888240
VSA88
GCA_900074135.1ContigFJSL00000000
SAMEA3888220
VSA65
GCA_900074415.1ContigFJTB00000000
SAMEA3888250
VSA98
GCA_900073835.1ContigFJRC00000000
SAMEA3888253
VSA101
GCA_900073915.1ContigFJRI00000000
SAMEA3888261
VSA109
GCA_900073805.1ContigFJQI00000000
SAMEA3888273
VSA10
GCA_900074485.1ContigFJTR00000000
SAMEA3888278
mad14
GCA_900074605.1ContigFJUC00000000
SAMEA3888289
mad44
GCA_900073485.1ContigFJOQ00000000
SAMEA3888118
SA78
GCA_900074585.1ContigFJUA00000000
SAMEA3888287
mad42
GCA_900073235.1ContigFJOV00000000
SAMEA3888163
SA154
GCA_900074655.1ContigFJUD00000000
SAMEA3888291
mad60
GCA_900073475.1ContigFJPW00000000
SAMEA3888066
10059
GCA_900074435.1ContigFJTS00000000
SAMEA3888251
VSA99
GCA_900074345.1ContigFJTY00000000
SAMEA3888241
VSA89
GCA_900074395.1ContigFJSZ00000000
SAMEA3888244
VSA92
GCA_900073775.1ContigFJRA00000000
SAMEA3888139
SA99
GCA_900074195.1ContigFJSG00000000
SAMEA3888224
VSA70
GCA_900074305.1ContigFJSX00000000
SAMEA3888234
VSA81
GCA_900073175.1ContigFJOT00000000
SAMEA3888064
9857
GCA_900073735.1ContigFJQK00000000
SAMEA3888134
SA94
GCA_900073655.1ContigFJQJ00000000
SAMEA3888124
SA84
GCA_900073595.1ContigFJPQ00000000
SAMEA3888076
SA21
GCA_900073905.1ContigFJRG00000000
SAMEA3888259
VSA107
GCA_900074095.1ContigFJSC00000000
SAMEA3888217
VSA36
GCA_900073225.1ContigFJPR00000000
SAMEA3888173
SA209
GCA_900073695.1ContigFJQP00000000
SAMEA3888123
SA83
GCA_900074165.1ContigFJSJ00000000
SAMEA3888221
VSA66
GCA_900073535.1ContigFJQE00000000
SAMEA3888185
SA233
GCA_900074185.1ContigFJSI00000000
SAMEA3888227
VSA73
GCA_900073605.1ContigFJPO00000000
SAMEA3888166
SA194
GCA_900073925.1ContigFJRK00000000
SAMEA3888264
VSA112
GCA_900074355.1ContigFJSW00000000
SAMEA3888243
VSA91
GCA_900074465.1ContigFJTC00000000
SAMEA3888277
mad12
GCA_900073845.1ContigFJRH00000000
SAMEA3888254
VSA102
GCA_900074065.1ContigFJSA00000000
SAMEA3888215
VSA26
GCA_900074335.1ContigFJTE00000000
SAMEA3888238
VSA86
GCA_900074005.1ContigFJRX00000000
SAMEA3888270
VSA118
GCA_900074205.1ContigFJSR00000000
SAMEA3888226
VSA72
GCA_900073725.1ContigFJQN00000000
SAMEA3888131
SA91
GCA_900073615.1ContigFJPY00000000
SAMEA3888082
SA31
GCA_900074425.1ContigFJTM00000000
SAMEA3888249
VSA97
GCA_900073405.1ContigFJQD00000000
SAMEA3888099
SA48
GCA_900074535.1ContigFJTX00000000
SAMEA3888284
mad34
GCA_900073145.1ContigFJOP00000000
SAMEA3888067
SA2
GCA_900073495.1ContigFJQB00000000
SAMEA3888168
SA196
GCA_900074155.1ContigFJSM00000000
SAMEA3888222
VSA68
GCA_900073665.1ContigFJRB00000000
SAMEA3888125
SA85
GCA_900074595.1ContigFJUB00000000
SAMEA3888288
mad43
GCA_900074615.1ContigFJUE00000000
SAMEA3888290
mad53
GCA_900073875.1ContigFJRL00000000
SAMEA3888257
VSA105
GCA_900074405.1ContigFJTI00000000
SAMEA3888247
VSA95
GCA_900073375.1ContigFJPB00000000
SAMEA3888142
SA102
GCA_900074235.1ContigFJSF00000000
SAMEA3888274
VSA76
GCA_900073515.1ContigFJPG00000000
SAMEA3888081
SA30
GCA_900073525.1ContigFJQF00000000
SAMEA3888172
SA208
GCA_900074245.1ContigFJSP00000000
SAMEA3888230
VSA77
GCA_900073955.1ContigFJRO00000000
SAMEA3888262
VSA110
GCA_900073685.1ContigFJQM00000000
SAMEA3888126
SA86
GCA_900073295.1ContigFJON00000000
SAMEA3888069
SA4
GCA_900073675.1ContigFJQO00000000
SAMEA3888129
SA89
GCA_900073985.1ContigFJRQ00000000
SAMEA3888268
VSA116
GCA_900073395.1ContigFJQC00000000
SAMEA3888103
SA52
GCA_900073755.1ContigFJQV00000000
SAMEA3888136
SA96
GCA_900074525.1ContigFJTN00000000
SAMEA3888281
mad25
GCA_900073965.1ContigFJRN00000000
SAMEA3888266
VSA114
GCA_900073545.1ContigFJPJ00000000
SAMEA3888119
SA79
GCA_900073265.1ContigFJPF00000000
SAMEA3888086
SA35
GCA_900074225.1ContigFJSQ00000000
SAMEA3888229
VSA75
GCA_900074365.1ContigFJSY00000000
SAMEA3888242
VSA90
GCA_900073205.1ContigFJOR00000000
SAMEA3888140
SA100
GCA_900073305.1ContigFJPM00000000
SAMEA3888085
SA34
GCA_900073315.1ContigFJPC00000000
SAMEA3888077
SA25
GCA_900073575.1ContigFJPP00000000
SAMEA3888141
SA101
GCA_900078265.1Complete genomeSAMEA3888151
SA111
GCA_900073135.1ContigFJPX00000000
SAMEA3888204
SA296
GCA_900074505.1ContigFJTW00000000
SAMEA3888280
mad24
GCA_900073215.1ContigFJOM00000000
SAMEA3888155
SA115
GCA_900073155.1ContigFJOU00000000
SAMEA3888080
SA29
GCA_900073425.1ContigFJQA00000000
SAMEA3888174
SA210
GCA_900074055.1ContigFJRY00000000
SAMEA3888214
VSA22
GCA_900073645.1ContigFJQX00000000
SAMEA3888121
SA81
GCA_900073555.1ContigFJPS00000000
SAMEA3888065
10058
GCA_900074475.1ContigFJTH00000000
SAMEA3888279
mad15
GCA_900074175.1ContigFJSS00000000
SAMEA3888225
VSA71
GCA_900073335.1ContigFJPK00000000
SAMEA3888079
SA28
GCA_900073445.1ContigFJPI00000000
SAMEA3888167
SA195
GCA_900073415.1ContigFJPU00000000
SAMEA3888156
SA116
GCA_900074515.1ContigFJTT00000000
SAMEA3888282
mad29
GCA_900073625.1ContigFJQH00000000
SAMEA3888120
SA80
SRA Data Details
ParameterValue
Data volume, Gbases43
Data volume, Mbytes22574

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