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Accession: PRJNA352737 ID: 352737

marine plankton metagenome

HOT ALOHA metagenomic time and depth series

A time-resolved deep metagenomic survey of bacterioplankton from the ocean's surface to a depth of 1,000 m in the North Pacific Subtropical Gyre at Station ALOHA, collected from Hawaii Ocean Time-series (HOT) cruises from August 2010 through November 2017.
AccessionPRJNA352737
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismmarine plankton metagenome[Taxonomy ID: 1874687]
unclassified sequences; metagenomes; ecological metagenomes; marine plankton metagenome
PublicationsMende DR et al., "Environmental drivers of a microbial genomic transition zone in the ocean's interior.", Nat Microbiol, 2017 Oct;2(10):1367-1373
SubmissionRegistration date: 23-Sep-2019
SCOPE
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)197
SRA Experiments1176
Publications
PubMed1
Other datasets
BioSample1028
Assembly197
Assembly details:
Assembly levelNumber of Assemblies
149
48
197
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_022452145.1ScaffoldJAKURY000000000SAMN25999105
ALOHA_A2.5_67
GCA_022452035.1ScaffoldJAKURV000000000SAMN25999102
ALOHA_A2.5_64
GCA_022451605.1ScaffoldJAKURW000000000SAMN25999103
ALOHA_A2.5_65
GCA_022451505.1ScaffoldJAKURX000000000SAMN25999104
ALOHA_A2.5_66
GCA_022451395.1ScaffoldJAKUOH000000000SAMN25999010
ALOHA_A2.0_28
GCA_022451315.1ScaffoldJAKUOG000000000SAMN25999009
ALOHA_A2.0_27
GCA_022451305.1ScaffoldJAKUOI000000000SAMN25999011
ALOHA_A2.0_29
GCA_022451285.1ScaffoldJAKUOJ000000000SAMN25999012
ALOHA_A2.0_30
GCA_022451225.1ScaffoldJAKUOL000000000SAMN25999014
ALOHA_A2.0_32
GCA_022451265.1ScaffoldJAKUOK000000000SAMN25999013
ALOHA_A2.0_31
GCA_022451085.1ScaffoldJAKUOM000000000SAMN25999015
ALOHA_A2.0_33
GCA_022449605.1ScaffoldJAKURT000000000SAMN25999100
ALOHA_A2.5_62
GCA_022449585.1ScaffoldJAKURZ000000000SAMN25999106
ALOHA_A2.5_68
GCA_022449565.1ScaffoldJAKUSA000000000SAMN25999107
ALOHA_A2.5_69
GCA_022449635.1ScaffoldJAKUSB000000000SAMN25999108
ALOHA_A2.5_70
GCA_022449515.1ScaffoldJAKUSD000000000SAMN25999110
ALOHA_A2.5_72
GCA_022449445.1ScaffoldJAKUSC000000000SAMN25999109
ALOHA_A2.5_71
GCA_022449385.1ScaffoldJAKURU000000000SAMN25999101
ALOHA_A2.5_63
GCA_022449265.1ContigJAKUSE000000000SAMN25999111
ALOHA_A2.5_73
GCA_022449455.1ScaffoldJAKUPL000000000SAMN25999040
ALOHA_A2.5_2
GCA_022450345.1ScaffoldJAKUPK000000000SAMN25999039
ALOHA_A2.5_1
GCA_022450785.1ContigJAKUPO000000000SAMN25999043
ALOHA_A2.5_5
GCA_022450705.1ScaffoldJAKUPP000000000SAMN25999044
ALOHA_A2.5_6
GCA_022450665.1ScaffoldJAKUPQ000000000SAMN25999045
ALOHA_A2.5_7
GCA_022449655.1ContigJAKUPM000000000SAMN25999041
ALOHA_A2.5_3
GCA_022449545.1ScaffoldJAKUPN000000000SAMN25999042
ALOHA_A2.5_4
GCA_022452005.1ScaffoldJAKUNH000000000SAMN25998984
ALOHA_A2.0_2
GCA_022451985.1ScaffoldJAKUNI000000000SAMN25998985
ALOHA_A2.0_3
GCA_022450585.1ScaffoldJAKUPR000000000SAMN25999046
ALOHA_A2.5_8
GCA_022450595.1ScaffoldJAKUPT000000000SAMN25999048
ALOHA_A2.5_10
GCA_022450625.1ScaffoldJAKUPS000000000SAMN25999047
ALOHA_A2.5_9
GCA_022449965.1ContigJAKURH000000000SAMN25999088
ALOHA_A2.5_50
GCA_022449745.1ContigJAKURI000000000SAMN25999089
ALOHA_A2.5_51
GCA_022451745.1ScaffoldJAKUNV000000000SAMN25998998
ALOHA_A2.0_16
GCA_022451795.1ContigJAKUSG000000000SAMN25999113
ALOHA_A2.5_75
GCA_022450565.1ScaffoldJAKUOP000000000SAMN25999018
ALOHA_A2.0_36
GCA_022450745.1ScaffoldJAKUOO000000000SAMN25999017
ALOHA_A2.0_35
GCA_022449245.1ContigJAKUSH000000000SAMN25999114
ALOHA_A2.5_76
GCA_022451585.1ContigJAKUST000000000SAMN25999126
ALOHA_A2.5_88
GCA_022450645.1ScaffoldJAKUPC000000000SAMN25999031
ALOHA_A2.0_49
GCA_022451765.1ScaffoldJAKUNY000000000SAMN25999001
ALOHA_A2.0_19
GCA_022451835.1ScaffoldJAKUNX000000000SAMN25999000
ALOHA_A2.0_18
GCA_022451825.1ScaffoldJAKUNW000000000SAMN25998999
ALOHA_A2.0_17
GCA_022452125.1ScaffoldJAKURJ000000000SAMN25999090
ALOHA_A2.5_52
GCA_022447885.1ContigJAKUTA000000000SAMN25999133
ALOHA_A2.5_95
GCA_022447265.1ScaffoldJAKUTB000000000SAMN25999134
ALOHA_A2.5_96
GCA_022451345.1ScaffoldJAKUOF000000000SAMN25999008
ALOHA_A2.0_26
GCA_022449715.1ScaffoldJAKURR000000000SAMN25999098
ALOHA_A2.5_60
GCA_022449705.1ScaffoldJAKURS000000000SAMN25999099
ALOHA_A2.5_61
GCA_022449835.1ScaffoldJAKURP000000000SAMN25999096
ALOHA_A2.5_58
GCA_022449805.1ContigJAKURO000000000SAMN25999095
ALOHA_A2.5_57
GCA_022449785.1ScaffoldJAKURQ000000000SAMN25999097
ALOHA_A2.5_59
GCA_022449905.1ContigJAKURN000000000SAMN25999094
ALOHA_A2.5_56
GCA_022447095.1ContigJAKUUP000000000SAMN25999174
ALOHA_A2.5_136
GCA_022448665.1ScaffoldJAKUUO000000000SAMN25999173
ALOHA_A2.5_135
GCA_022448685.1ContigJAKUUN000000000SAMN25999172
ALOHA_A2.5_134
GCA_022449205.1ScaffoldJAKURK000000000SAMN25999091
ALOHA_A2.5_53
GCA_022449845.1ScaffoldJAKUOE000000000SAMN25999007
ALOHA_A2.0_25
GCA_022449945.1ScaffoldJAKURM000000000SAMN25999093
ALOHA_A2.5_55
GCA_022449345.1ScaffoldJAKURL000000000SAMN25999092
ALOHA_A2.5_54
GCA_022450765.1ScaffoldJAKUOC000000000SAMN25999005
ALOHA_A2.0_23
GCA_022451725.1ScaffoldJAKUNZ000000000SAMN25999002
ALOHA_A2.0_20
GCA_022451235.1ScaffoldJAKUOA000000000SAMN25999003
ALOHA_A2.0_21
GCA_022451205.1ScaffoldJAKUOD000000000SAMN25999006
ALOHA_A2.0_24
GCA_022451145.1ContigJAKUOB000000000SAMN25999004
ALOHA_A2.0_22
GCA_022448455.1ContigJAKUUR000000000SAMN25999176
ALOHA_A2.5_138
GCA_022451685.1ContigJAKUQJ000000000SAMN25999064
ALOHA_A2.5_26
GCA_022451965.1ScaffoldJAKUNJ000000000SAMN25998986
ALOHA_A2.0_4
GCA_022451945.1ScaffoldJAKUNK000000000SAMN25998987
ALOHA_A2.0_5
GCA_022451925.1ScaffoldJAKUNL000000000SAMN25998988
ALOHA_A2.0_6
GCA_022451885.1ScaffoldJAKUNN000000000SAMN25998990
ALOHA_A2.0_8
GCA_022451865.1ScaffoldJAKUNM000000000SAMN25998989
ALOHA_A2.0_7
GCA_022450525.1ContigJAKUQA000000000SAMN25999055
ALOHA_A2.5_17
GCA_022450495.1ScaffoldJAKUQC000000000SAMN25999057
ALOHA_A2.5_19
GCA_022450485.1ScaffoldJAKUPU000000000SAMN25999049
ALOHA_A2.5_11
GCA_022450455.1ScaffoldJAKUQD000000000SAMN25999058
ALOHA_A2.5_20
GCA_022450445.1ScaffoldJAKUQF000000000SAMN25999060
ALOHA_A2.5_22
GCA_022450425.1ScaffoldJAKUQB000000000SAMN25999056
ALOHA_A2.5_18
GCA_022450395.1ScaffoldJAKUQE000000000SAMN25999059
ALOHA_A2.5_21
GCA_022450385.1ScaffoldJAKUPV000000000SAMN25999050
ALOHA_A2.5_12
GCA_022450315.1ScaffoldJAKUQG000000000SAMN25999061
ALOHA_A2.5_23
GCA_022450305.1ContigJAKUPX000000000SAMN25999052
ALOHA_A2.5_14
GCA_022450255.1ContigJAKUPW000000000SAMN25999051
ALOHA_A2.5_13
GCA_022450175.1ScaffoldJAKUQI000000000SAMN25999063
ALOHA_A2.5_25
GCA_022450145.1ScaffoldJAKUPY000000000SAMN25999053
ALOHA_A2.5_15
GCA_022450115.1ContigJAKUQK000000000SAMN25999065
ALOHA_A2.5_27
GCA_022449505.1ContigJAKUQH000000000SAMN25999062
ALOHA_A2.5_24
GCA_022449765.1ScaffoldJAKUPZ000000000SAMN25999054
ALOHA_A2.5_16
GCA_022449685.1ScaffoldJAKUQL000000000SAMN25999066
ALOHA_A2.5_28
GCA_022451455.1ScaffoldJAKUNO000000000SAMN25998991
ALOHA_A2.0_9
GCA_022450245.1ScaffoldJAKUQN000000000SAMN25999068
ALOHA_A2.5_30
GCA_022450365.1ContigJAKUQM000000000SAMN25999067
ALOHA_A2.5_29
GCA_022450275.1ScaffoldJAKUQO000000000SAMN25999069
ALOHA_A2.5_31
GCA_022450185.1ContigJAKUQP000000000SAMN25999070
ALOHA_A2.5_32
GCA_022451425.1ScaffoldJAKUNP000000000SAMN25998992
ALOHA_A2.0_10
GCA_022449405.1ScaffoldJAKUQV000000000SAMN25999076
ALOHA_A2.5_38
GCA_022451485.1ScaffoldJAKUQS000000000SAMN25999073
ALOHA_A2.5_35
GCA_022451385.1ContigJAKUNR000000000SAMN25998994
ALOHA_A2.0_12
GCA_022451705.1ScaffoldJAKUQU000000000SAMN25999075
ALOHA_A2.5_37
GCA_022450965.1ContigJAKUNQ000000000SAMN25998993
ALOHA_A2.0_11
GCA_022449885.1ContigJAKUQT000000000SAMN25999074
ALOHA_A2.5_36
GCA_022450225.1ScaffoldJAKUQQ000000000SAMN25999071
ALOHA_A2.5_33
GCA_022450155.1ScaffoldJAKUQR000000000SAMN25999072
ALOHA_A2.5_34
GCA_022450105.1ScaffoldJAKURB000000000SAMN25999082
ALOHA_A2.5_44
GCA_022450075.1ScaffoldJAKURA000000000SAMN25999081
ALOHA_A2.5_43
GCA_022450065.1ScaffoldJAKURC000000000SAMN25999083
ALOHA_A2.5_45
GCA_022450025.1ScaffoldJAKUQW000000000SAMN25999077
ALOHA_A2.5_39
GCA_022449825.1ScaffoldJAKUQZ000000000SAMN25999080
ALOHA_A2.5_42
GCA_022449615.1ScaffoldJAKUQY000000000SAMN25999079
ALOHA_A2.5_41
GCA_022451665.1ScaffoldJAKUQX000000000SAMN25999078
ALOHA_A2.5_40
GCA_022451365.1ContigJAKUNS000000000SAMN25998995
ALOHA_A2.0_13
GCA_022450045.1ContigJAKURD000000000SAMN25999084
ALOHA_A2.5_46
GCA_022450005.1ScaffoldJAKURE000000000SAMN25999085
ALOHA_A2.5_47
GCA_022449985.1ScaffoldJAKURF000000000SAMN25999086
ALOHA_A2.5_48
GCA_022448825.1ContigJAKUTL000000000SAMN25999144
ALOHA_A2.5_106
GCA_022449925.1ScaffoldJAKURG000000000SAMN25999087
ALOHA_A2.5_49
GCA_022451625.1ScaffoldJAKUSF000000000SAMN25999112
ALOHA_A2.5_74
GCA_022450825.1ScaffoldJAKUON000000000SAMN25999016
ALOHA_A2.0_34
GCA_022452065.1ScaffoldJAKUSI000000000SAMN25999115
ALOHA_A2.5_77
GCA_022451545.1ScaffoldJAKUSJ000000000SAMN25999116
ALOHA_A2.5_78
GCA_022449325.1ScaffoldJAKUSK000000000SAMN25999117
ALOHA_A2.5_79
GCA_022449365.1ContigJAKUSL000000000SAMN25999118
ALOHA_A2.5_80
GCA_022449275.1ScaffoldJAKUSN000000000SAMN25999120
ALOHA_A2.5_82
GCA_022449485.1ContigJAKUSM000000000SAMN25999119
ALOHA_A2.5_81
GCA_022450865.1ScaffoldJAKUOQ000000000SAMN25999019
ALOHA_A2.0_37
GCA_022449305.1ScaffoldJAKUSO000000000SAMN25999121
ALOHA_A2.5_83
GCA_022449415.1ScaffoldJAKUSP000000000SAMN25999122
ALOHA_A2.5_84
GCA_022451125.1ContigJAKUOR000000000SAMN25999020
ALOHA_A2.0_38
GCA_022449225.1ScaffoldJAKUSQ000000000SAMN25999123
ALOHA_A2.5_85
GCA_022451105.1ScaffoldJAKUOT000000000SAMN25999022
ALOHA_A2.0_40
GCA_022451155.1ScaffoldJAKUOS000000000SAMN25999021
ALOHA_A2.0_39
GCA_022451065.1ScaffoldJAKUOU000000000SAMN25999023
ALOHA_A2.0_41
GCA_022451645.1ScaffoldJAKUSS000000000SAMN25999125
ALOHA_A2.5_87
GCA_022452135.1ScaffoldJAKUSR000000000SAMN25999124
ALOHA_A2.5_86
GCA_022452025.1ScaffoldJAKUSW000000000SAMN25999129
ALOHA_A2.5_91
GCA_022451565.1ContigJAKUSU000000000SAMN25999127
ALOHA_A2.5_89
GCA_022451045.1ScaffoldJAKUOW000000000SAMN25999025
ALOHA_A2.0_43
GCA_022451005.1ScaffoldJAKUOX000000000SAMN25999026
ALOHA_A2.0_44
GCA_022451185.1ScaffoldJAKUOV000000000SAMN25999024
ALOHA_A2.0_42
GCA_022452105.1ContigJAKUSV000000000SAMN25999128
ALOHA_A2.5_90
GCA_022450675.1ScaffoldJAKUOY000000000SAMN25999027
ALOHA_A2.0_45
GCA_022450725.1ContigJAKUPB000000000SAMN25999030
ALOHA_A2.0_48
GCA_022450985.1ScaffoldJAKUOZ000000000SAMN25999028
ALOHA_A2.0_46
GCA_022450925.1ContigJAKUPA000000000SAMN25999029
ALOHA_A2.0_47
GCA_022451445.1ScaffoldJAKUSY000000000SAMN25999131
ALOHA_A2.5_93
GCA_022452205.1ScaffoldJAKUSZ000000000SAMN25999132
ALOHA_A2.5_94
GCA_022452185.1ScaffoldJAKUSX000000000SAMN25999130
ALOHA_A2.5_92
GCA_022450945.1ScaffoldJAKUPD000000000SAMN25999032
ALOHA_A2.0_50
GCA_022450905.1ScaffoldJAKUPE000000000SAMN25999033
ALOHA_A2.0_51
GCA_022447145.1ScaffoldJAKUTD000000000SAMN25999136
ALOHA_A2.5_98
GCA_022448085.1ContigJAKUTH000000000SAMN25999140
ALOHA_A2.5_102
GCA_022447725.1ScaffoldJAKUTF000000000SAMN25999138
ALOHA_A2.5_100
GCA_022447905.1ScaffoldJAKUTG000000000SAMN25999139
ALOHA_A2.5_101
GCA_022447805.1ScaffoldJAKUTE000000000SAMN25999137
ALOHA_A2.5_99
GCA_022448785.1ScaffoldJAKUTJ000000000SAMN25999142
ALOHA_A2.5_104
GCA_022448765.1ScaffoldJAKUTI000000000SAMN25999141
ALOHA_A2.5_103
GCA_022450885.1ScaffoldJAKUPG000000000SAMN25999035
ALOHA_A2.0_53
GCA_022450845.1ScaffoldJAKUPH000000000SAMN25999036
ALOHA_A2.0_54
GCA_022451025.1ScaffoldJAKUPF000000000SAMN25999034
ALOHA_A2.0_52
GCA_022451525.1ScaffoldJAKUTC000000000SAMN25999135
ALOHA_A2.5_97
GCA_022448005.1ScaffoldJAKUTK000000000SAMN25999143
ALOHA_A2.5_105
GCA_022448875.1ScaffoldJAKUTM000000000SAMN25999145
ALOHA_A2.5_107
GCA_022448845.1ScaffoldJAKUTN000000000SAMN25999146
ALOHA_A2.5_108
GCA_022448865.1ContigJAKUTO000000000SAMN25999147
ALOHA_A2.5_109
GCA_022450795.1ScaffoldJAKUPI000000000SAMN25999037
ALOHA_A2.0_55
GCA_022450545.1ContigJAKUPJ000000000SAMN25999038
ALOHA_A2.0_56
GCA_022448725.1ScaffoldJAKUTR000000000SAMN25999150
ALOHA_A2.5_112
GCA_022448805.1ScaffoldJAKUTP000000000SAMN25999148
ALOHA_A2.5_110
GCA_022448505.1ContigJAKUTT000000000SAMN25999152
ALOHA_A2.5_114
GCA_022447045.1ContigJAKUTW000000000SAMN25999155
ALOHA_A2.5_117
GCA_022448055.1ScaffoldJAKUTU000000000SAMN25999153
ALOHA_A2.5_115
GCA_022447825.1ContigJAKUTY000000000SAMN25999157
ALOHA_A2.5_119
GCA_022447765.1ScaffoldJAKUTV000000000SAMN25999154
ALOHA_A2.5_116
GCA_022447855.1ContigJAKUTX000000000SAMN25999156
ALOHA_A2.5_118
GCA_022447925.1ScaffoldJAKUTS000000000SAMN25999151
ALOHA_A2.5_113
GCA_022447915.1ScaffoldJAKUTQ000000000SAMN25999149
ALOHA_A2.5_111
GCA_022447845.1ScaffoldJAKUTZ000000000SAMN25999158
ALOHA_A2.5_120
GCA_022447745.1ScaffoldJAKUUA000000000SAMN25999159
ALOHA_A2.5_121
GCA_022448045.1ScaffoldJAKUUJ000000000SAMN25999168
ALOHA_A2.5_130
GCA_022448015.1ScaffoldJAKUUC000000000SAMN25999161
ALOHA_A2.5_123
GCA_022447985.1ScaffoldJAKUUB000000000SAMN25999160
ALOHA_A2.5_122
GCA_022447965.1ScaffoldJAKUUE000000000SAMN25999163
ALOHA_A2.5_125
GCA_022448115.1ScaffoldJAKUUD000000000SAMN25999162
ALOHA_A2.5_124
GCA_022447085.1ScaffoldJAKUUH000000000SAMN25999166
ALOHA_A2.5_128
GCA_022448485.1ContigJAKUUI000000000SAMN25999167
ALOHA_A2.5_129
GCA_022448565.1ScaffoldJAKUUG000000000SAMN25999165
ALOHA_A2.5_127
GCA_022448735.1ContigJAKUUK000000000SAMN25999169
ALOHA_A2.5_131
GCA_022448705.1ContigJAKUUF000000000SAMN25999164
ALOHA_A2.5_126
GCA_022447065.1ContigJAKUUM000000000SAMN25999171
ALOHA_A2.5_133
GCA_022447025.1ScaffoldJAKUUL000000000SAMN25999170
ALOHA_A2.5_132
GCA_022452285.1ScaffoldJAKUNG000000000SAMN25998983
ALOHA_A2.0_1
GCA_022448305.1ScaffoldJAKUUQ000000000SAMN25999175
ALOHA_A2.5_137
GCA_022447125.1ScaffoldJAKUUS000000000SAMN25999177
ALOHA_A2.5_139
GCA_022448185.1ScaffoldJAKUUT000000000SAMN25999178
ALOHA_A2.5_140
GCA_022451905.1ScaffoldJAKUNT000000000SAMN25998996
ALOHA_A2.0_14
GCA_022451785.1ScaffoldJAKUNU000000000SAMN25998997
ALOHA_A2.0_15
GCA_008636205.1ContigVTLG00000000SAMN12604809
-
SRA Data Details
ParameterValue
Data volume, Gbases6,012
Data volume, Tbytes2.76

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