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Accession: PRJNA416144 ID: 416144

Oncorhynchus tshawytscha (Chinook salmon)

Oncorhynchus tshawytscha Genome sequencing and assembly

See Genome Information for Oncorhynchus tshawytscha
Chinook salmon (Oncorhynchus tshawytshcha) bridge the land and the sea through multi-generational migrations that can encompass thousands of kilometers. More...
AccessionPRJNA416144
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismOncorhynchus tshawytscha[Taxonomy ID: 74940]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus; Oncorhynchus tshawytscha
PublicationsChristensen KA et al., "Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome.", PLoS One, 2018;13(4):e0195461
Grants
  • "Salmonid Genome Duplication Drives Specialization and Adaptation" (Grant ID NSERC 2017, Natural Sciences and Engineering Research Council of Canada)
SubmissionRegistration date: 9-Jan-2018
Fisheries and Oceans Canada
RelevanceFisheries, Cultural, and Enviromental
Locus Tag PrefixCS950
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)70
WGS master2
SRA Experiments31
Publications
PubMed1
PMC1
Other datasets
BioSample21
Assembly2
Assembly details:
Assembly levelNumber of Assemblies
2
2
AssemblyLevelWGSChrsBioSampleIsolateTaxonomy
GCA_002872995.1ChromosomePEKY00000000SAMN07843558
Chilliwack Hatchery Individual DE9421
GCA_018296145.1ChromosomeJAEPEU000000000SAMN17219827
Ot180627B
SRA Data Details
ParameterValue
Data volume, Gbases1,273
Data volume, Tbytes0.56
Related RefSeq Project
PRJNA432585 : Oncorhynchus tshawytscha isolate:Chilliwack Hatchery Individual DE9421 RefSeq Genome sequencing

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