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2 additional projects are components of the FOXF1 defines the core-regulatory circuitry in gastrointestinal stromal tumor (GIST).
ChIP profiles were generated by deep sequencing using Illumina HiSeq.
Overall design: To examine the specific binding pattern of ETV1 and FOXF1 in different cell lineages, we performed performed ETV1 and FOXF1 ChIP-sequencing in GIST48 and MDA-PCa2b
To directly examine whether FOXF1 can modulate binding of other transcription factors in GIST, we performed ETV1 and FOXF1 ChIP-sequencing in GIST48 cells with ETV1 or FOXF1 knockdown.
| Accession | PRJNA417539; GEO: GSE106624 |
| Data Type | Epigenomics |
| Scope | Multiisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Publications | Ran L et al., "FOXF1 Defines the Core-Regulatory Circuitry in Gastrointestinal Stromal Tumor.", Cancer Discov, 2018 Feb;8(2):234-251 |
| Submission | Registration date: 7-Nov-2017
Ping Chi, HOPP, Memorial Sloan Kettering Cancer Center |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 23 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 23 |
| GEO DataSets | 1 |