The ElectricMicrobe100 project contains genomic and other systems biology level data about microorganisms from microbial electrochemical systems. The last 20 years have seen incredible improvements in MFC design, leading to much better understanding of application space for MFC and insight into the fundamental mechanisms of extracellular electron transport. A common practice is to sequence the 16S rRNA genes found in enrichments of electrogenic or electrotrophic microbial communities to shed light on the microbial diversity. However, a vast amount of information is lost by leaving the genomes unsequenced. With the constant improvement in genomic sequencing, assembly, and annotation, it is within reach to sequence 100 new genomes from microbial electrochemical systems in the next two years.
More...The ElectricMicrobe100 project contains genomic and other systems biology level data about microorganisms from microbial electrochemical systems. The last 20 years have seen incredible improvements in MFC design, leading to much better understanding of application space for MFC and insight into the fundamental mechanisms of extracellular electron transport. A common practice is to sequence the 16S rRNA genes found in enrichments of electrogenic or electrotrophic microbial communities to shed light on the microbial diversity. However, a vast amount of information is lost by leaving the genomes unsequenced. With the constant improvement in genomic sequencing, assembly, and annotation, it is within reach to sequence 100 new genomes from microbial electrochemical systems in the next two years. The ElectricMicrobe100 umbrella bioproject aggregates these projects to achieve a deeper understanding of the microbial and physiological processes that constrain these systems.
Less...Accession | PRJNA417841 |
Type | Umbrella project |
Submission | Registration date: 9-Nov-2017 US Naval Research laboratory |
Relevance | Environmental |
Project Data:
Resource Name | Number of Links |
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Sequence data |
Nucleotide (total) | 940 |
WGS master | 47 |
Genomic DNA | 17 |
SRA Experiments | 189 |
Protein Sequences | 41972 |
Publications |
PubMed | 8 |
PMC | 6 |
Other datasets |
BioSample | 140 |
Assembly | 52 |
This project encompasses the following 8 sub-projects:
Project Type | Number of Projects |
Genome sequencing | 3 2 1 2 8
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BioProject accession | Assembly level | Name | Title |
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PRJNA480465 | Complete genome | Leisingera aquaemixtae | Leisingera aquaemixtae strain:R2C4 Genome sequencing and assembly (US Naval Research Laboratory) | PRJNA533641 | SRA or Trace | Marinobacter atlanticus transcriptome at different potentials | Marinobacter atlanticus transcriptome at different potentials (US Naval Research Laboratory) | PRJNA759889 | SRA or Trace | Microbial Survival and Growth on Electrodes | Microbial Survival and Growth on Electrodes (US Naval Research Laboratory) | PRJNA244670 | Complete genome | Microbial consortium enriched at the cathode of a solar microbial fuel cell | Microbial consortium enriched at the cathode of a solar microbial fuel cell (US Naval Research laboratory) | PRJNA527076 | Complete genome | Pseudomonas aeruginosa | Pseudomonas aeruginosa KRP1 Genome sequencing and assembly (Uni Bielefeld) | List all 8 'Genome sequencing' projects...BioProject accession | Assembly level | Name | Title |
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PRJNA480465 | Complete genome | Leisingera aquaemixtae | Leisingera aquaemixtae strain:R2C4 Genome sequencing and assembly (US Naval Research Laboratory) | PRJNA533641 | SRA or Trace | Marinobacter atlanticus transcriptome at different potentials | Marinobacter atlanticus transcriptome at different potentials (US Naval Research Laboratory) | PRJNA759889 | SRA or Trace | Microbial Survival and Growth on Electrodes | Microbial Survival and Growth on Electrodes (US Naval Research Laboratory) | PRJNA244670 | Complete genome | Microbial consortium enriched at the cathode of a solar microbial fuel cell | Microbial consortium enriched at the cathode of a solar microbial fuel cell (US Naval Research laboratory) | PRJNA527076 | Complete genome | Pseudomonas aeruginosa | Pseudomonas aeruginosa KRP1 Genome sequencing and assembly (Uni Bielefeld) | PRJNA340218 | Scaffolds | biofilm metagenome | electrogenic microbial community genome sequencing (Japan Agency for Marine-Earth...) | PRJNA173069 | Scaffolds | bioreactor metagenome | Anode biofilm in microbial fuel cells Metagenome (J Craig Venter Institute) | PRJNA716594 | Contigs | freshwater sediment metagenome | Enrichment of a Cathode-ANode (CANode) microbial community (Naval Research Laboratory) | Less... |