Sphingomonas (ID 445389) - BioProject

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Accession: PRJNA445389 ID: 445389

Sphingomonas

Sphingomonas Genome sequencing and assembly

See Genome Information for Sphingomonas koreensis

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6 additional projects are related by organism.

Clinical isolates from patients and hospital environment of the NIH Clinical Center and other institutions

Accession	PRJNA445389
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Sphingomonas[Taxonomy ID: 13687] Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas
Publications	Johnson RC et al., "Investigation of a Cluster of Sphingomonas koreensis Infections.", N Engl J Med, 2018 Dec 27;379(26):2529-2539
Submission	Registration date: 17-Dec-2018 NHGRI/NIH
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	4900
WGS master	80
Genomic DNA	2
SRA Experiments	131
Protein Sequences	367978
Publications
PubMed	1
PMC	1
Other datasets
BioSample	130
Assembly	81

Assembly details:

Download

Assembly level

Number of Assemblies

Complete genome

Contig

Total

1
80
81

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_003951335.1	QRAL00000000		SAMN08815978	SK-NIH.Env6_1116	Sphingobium yanoikuyae
GCA_001922385.1		2	SAMN06040428	ABOJV	Sphingomonas koreensis
GCA_003950775.1	QQXS00000000		SAMN08816026	SK-NIH.Env54_1217	Sphingomonas koreensis
GCA_003950755.1	QQWO00000000		SAMN06921737	SK-NIH.Env10_0317	Sphingomonas koreensis
GCA_003951685.1	QQXZ00000000		SAMN08816019	SK-NIH.Env46_1017	Sphingomonas koreensis
GCA_003951695.1	QQXQ00000000		SAMN08816028	SK-NIH.Env56_1217	Sphingomonas koreensis
GCA_003951705.1	QQYI00000000		SAMN08816010	SK-NIH.Env39_0817	Sphingomonas koreensis
GCA_003951665.1	QQZA00000000		SAMN08815992	SK-NIH.Env20_0617	Sphingomonas koreensis
GCA_003951075.1	QQZI00000000		SAMN08815984	SK-NIH.Env17_0517	Sphingomonas koreensis
GCA_003951045.1	QQZG00000000		SAMN08815986	SK-NIH.Env14_0417	Sphingomonas koreensis
GCA_003951035.1	QQXT00000000		SAMN08816025	SK-NIH.Env57_1217	Sphingomonas koreensis
GCA_003951015.1	QQWT00000000		SAMN06921719	SK-NIH.Pt8_0208	Sphingomonas koreensis
GCA_003950995.1	QQWR00000000		SAMN06921722	SK-NIH.Pt10_0210	Sphingomonas koreensis
GCA_003950975.1	QQYZ00000000		SAMN08815993	SK-CDC1_0717	Sphingomonas koreensis
GCA_003950955.1	QQYG00000000		SAMN08816012	SK-NIH.Env41_0817	Sphingomonas koreensis
GCA_003950925.1	QQYB00000000		SAMN08816017	SK-NIH.Env48_1017	Sphingomonas koreensis
GCA_003950915.1	QQYY00000000		SAMN08815994	SK-NIH.Env23_0717	Sphingomonas koreensis
GCA_003950895.1	QQYV00000000		SAMN08815997	SK-NIH.Env26_0717	Sphingomonas koreensis
GCA_003950875.1	QQYS00000000		SAMN08816000	SK-NIH.Env29_0717	Sphingomonas koreensis
GCA_003950855.1	QQYR00000000		SAMN08816001	SK-NIH.Env30_0717	Sphingomonas koreensis
GCA_003950835.1	QQXG00000000		SAMN06921706	SK-NIH.Env1_1016	Sphingomonas koreensis
GCA_003950815.1	QQXE00000000		SAMN06921708	SK-NIH.Env5_1116	Sphingomonas koreensis
GCA_003951805.1	QQZF00000000		SAMN08815987	SK-NIH.Env16_0517	Sphingomonas koreensis
GCA_003951795.1	QQYX00000000		SAMN08815995	SK-NIH.Env24_0717	Sphingomonas koreensis
GCA_003951785.1	QQYN00000000		SAMN08816005	SK-NIH.Env34_0717	Sphingomonas koreensis
GCA_003951725.1	QQYL00000000		SAMN08816007	SK-NIH.Env37_0717	Sphingomonas koreensis
GCA_003951525.1	QQYF00000000		SAMN08816013	SK-NIH.Env42_0817	Sphingomonas koreensis
GCA_003951505.1	QQXU00000000		SAMN08816024	SK-NIH.Env53_1017	Sphingomonas koreensis
GCA_003951475.1	QQWM00000000		SAMN08815980	SK-NIH.Env15_0417	Sphingomonas koreensis
GCA_003951455.1	QQYM00000000		SAMN08816006	SK-NIH.Env35_0717	Sphingomonas koreensis
GCA_003951425.1	QQWN00000000		SAMN08815979	SK-NIH.Env12_0417	Sphingomonas koreensis
GCA_003951415.1	QLJI00000000		SAMN06040427	SK-NIH.Pt4_0816	Sphingomonas koreensis
GCA_003951395.1	QQYQ00000000		SAMN08816002	SK-NIH.Env31_0717	Sphingomonas koreensis
GCA_003951375.1	QQYD00000000		SAMN08816015	SK-NIH.Env44_0817	Sphingomonas koreensis
GCA_003951355.1	QQWP00000000		SAMN06921736	SK-NY1_0417	Sphingomonas koreensis
GCA_003951955.1	QQZE00000000		SAMN08815988	SK-NIH.Env18_0517	Sphingomonas koreensis
GCA_003951945.1	QQYW00000000		SAMN08815996	SK-NIH.Env25_0717	Sphingomonas koreensis
GCA_003951925.1	QQYU00000000		SAMN08815998	SK-NIH.Env27_0717	Sphingomonas koreensis
GCA_003951895.1	QQYO00000000		SAMN08816004	SK-NIH.Env33_0717	Sphingomonas koreensis
GCA_003951885.1	QQXV00000000		SAMN08816023	SK-NIH.Env52_1017	Sphingomonas koreensis
GCA_003951855.1	QQZH00000000		SAMN08815985	SK-NIH.Env13_0417	Sphingomonas koreensis
GCA_003953455.1	QQZD00000000		SAMN08815989	SK-NIH.Env21_0617	Sphingomonas koreensis
GCA_003953445.1	QQZC00000000		SAMN08815990	SK-NIH.Env22_0617	Sphingomonas koreensis
GCA_003953425.1	QQZB00000000		SAMN08815991	SK-NIH.Env19_0617	Sphingomonas koreensis
GCA_003953405.1	QQYT00000000		SAMN08815999	SK-NIH.Env28_0717	Sphingomonas koreensis
GCA_003953365.1	QQYK00000000		SAMN08816008	SK-NIH.Env38_0817	Sphingomonas koreensis
GCA_003953355.1	QQYP00000000		SAMN08816003	SK-NIH.Env32_0717	Sphingomonas koreensis
GCA_003953345.1	QQYJ00000000		SAMN08816009	SK-NIH.Env36_0717	Sphingomonas koreensis
GCA_003953325.1	QQYH00000000		SAMN08816011	SK-NIH.Env40_0817	Sphingomonas koreensis
GCA_003953275.1	QQYC00000000		SAMN08816016	SK-NIH.Env45_1017	Sphingomonas koreensis
GCA_003953255.1	QQYA00000000		SAMN08816018	SK-NIH.Env49_1017	Sphingomonas koreensis
GCA_003953235.1	QQXX00000000		SAMN08816021	SK-NIH.Env50_1017	Sphingomonas koreensis
GCA_003953265.1	QQYE00000000		SAMN08816014	SK-NIH.Env43_0817	Sphingomonas koreensis
GCA_003953225.1	QQXY00000000		SAMN08816020	SK-NIH.Env47_1017	Sphingomonas koreensis
GCA_003953205.1	QQXW00000000		SAMN08816022	SK-NIH.Env51_1017	Sphingomonas koreensis
GCA_003953155.1	QQXF00000000		SAMN06921707	SK-NIH.Env7_1116	Sphingomonas koreensis
GCA_003953145.1	QQXB00000000		SAMN06921711	SK-NIH.Pt16_1112	Sphingomonas koreensis
GCA_003953135.1	QQXC00000000		SAMN06921710	SK-NIH.Pt11_0411	Sphingomonas koreensis
GCA_003953125.1	QQWU00000000		SAMN06921718	SK-NIH.Pt7_0906	Sphingomonas koreensis
GCA_003953025.1	QLJJ00000000		SAMN06040426	SK-NIH.Pt2_0716	Sphingomonas koreensis
GCA_003953055.1	QQWS00000000		SAMN06921720	SK-NIH.Pt9_0208	Sphingomonas koreensis
GCA_003953035.1	QQWK00000000		SAMN08815982	KCTC 2882	Sphingomonas koreensis
GCA_003953045.1	QQWL00000000		SAMN08815981	SK-NIH.Env11_0417	Sphingomonas koreensis
GCA_003950695.1	QQWJ00000000		SAMN08815983	KCTC 2883	Sphingomonas koreensis
GCA_003950665.1	QLJE00000000		SAMN06921703	SK-NIH.Env3_1116	Sphingomonas koreensis
GCA_003950655.1	QLJF00000000		SAMN06921702	SK-NIH.Env2_1116	Sphingomonas koreensis
GCA_003951275.1	QLJC00000000		SAMN06921705	SK-NIH.Env8_1116	Sphingomonas koreensis
GCA_003950495.1	QQXD00000000		SAMN06921709	SK-NIH.Pt12_0112	Sphingomonas koreensis
GCA_003950475.1	QQWQ00000000		SAMN06921733	SK-NIH.Env9_0217	Sphingomonas koreensis
GCA_003950405.1	QQXA00000000		SAMN06921712	SK-NIH.Pt14_0612	Sphingomonas koreensis
GCA_003950395.1	QQXR00000000		SAMN08816027	SK-NIH.Env55_1217	Sphingomonas koreensis
GCA_003950365.1	QLJG00000000		SAMN06921701	SK-NIH.Pt6_1016	Sphingomonas koreensis
GCA_003950355.1	QLJD00000000		SAMN06921704	SK-NIH.Env4_1116	Sphingomonas koreensis
GCA_003951845.1	QQWZ00000000		SAMN06921713	S-NIH.Pt20_1215	Sphingomonas sp. ABOLD
GCA_003950455.1	QQWY00000000		SAMN06921714	S-NIH.Pt18_1212	Sphingomonas sp. ABOLE
GCA_003950785.1	QQWX00000000		SAMN06921715	S-NIH.Pt19_1214	Sphingomonas sp. ABOLF
GCA_003950435.1	QQWW00000000		SAMN06921716	S-NIH.Pt13_0512	Sphingomonas sp. ABOLG
GCA_003951715.1	QQWV00000000		SAMN06921717	S-NIH.Pt17_1112	Sphingomonas sp. ABOLH
GCA_003951315.1	QLJH00000000		SAMN06040431	S-NIH.Pt15_0812	Sphingomonas sp. S-NIH.Pt15_0812
GCA_003953065.1	QLJL00000000		SAMN06040424	S-NIH.Pt1_0416	Sphingomonas sp. S-NIH.Pt1_0416
GCA_003950715.1	QLJK00000000		SAMN06040425	S-NIH.Pt3_0716	Sphingomonas sp. S-NIH.Pt3_0716

SRA Data Details

Parameter	Value
Data volume, Gbases	286
Data volume, Tbytes	0.20

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Sphingomonas Genome sequencing and assembly

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