groundwater metagenome (ID 472439) - BioProject

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Accession: PRJNA472439 ID: 472439

groundwater metagenome

Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland

Genome resolved metagenomic sequencing of deep subsurface groundwater to explore deep biosphere microbial communities (OL-KR11 and OL-KR46, Olkiluoto, Finland)

Accession	PRJNA472439
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	groundwater metagenome[Taxonomy ID: 717931] unclassified sequences; metagenomes; ecological metagenomes; groundwater metagenome
Publications	Bell E et al., "Active sulfur cycling in the terrestrial deep subsurface.", ISME J, 2020 May;14(5):1260-1272 Bell E et al., "Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater.", Front Microbiol, 2018;9:2129
Submission	Registration date: 28-Jul-2020 Ecole Polytechnique Federale de Lausanne (EPFL)
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	33
SRA Experiments	5
Publications
PubMed	2
PMC	2
Other datasets
BioSample	38
Assembly	33

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

33
33

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_013791645.1	VMTL00000000	SAMN12221378	N3_21	Anaerolineae bacterium
GCA_013791825.1	VMTB00000000	SAMN12221368	01_90	Brevundimonas sp.
GCA_013791565.1	VMTO00000000	SAMN12221381	N3_50	Candidatus Atribacteria bacterium
GCA_013791585.1	VMTK00000000	SAMN12221377	S3_17	Candidatus Falkowbacteria bacterium
GCA_013791745.1	VMTH00000000	SAMN12221374	S2_29	Candidatus Omnitrophota bacterium
GCA_013791545.1	VMTN00000000	SAMN12221380	S2_63	Candidatus Woesearchaeota archaeon
GCA_019084465.1	JAHRFT000000000	SAMN19406535	J_35	Desulfarculus sp.
GCA_013791935.1	VMSV00000000	SAMN12221362	S2_4	Desulfobacteraceae bacterium
GCA_013792055.1	VMSQ00000000	SAMN12221357	S3_36	Desulfobacteraceae bacterium
GCA_013792015.1	VMST00000000	SAMN12221360	N3_53	Desulfobacterium sp.
GCA_013792075.1	VMSR00000000	SAMN12221358	S2_67	Desulfobacula sp.
GCA_013792005.1	VMSU00000000	SAMN12221361	S2_18	Desulfobulbaceae bacterium
GCA_013792135.1	VMSP00000000	SAMN12221356	N3_15	Desulfocapsa sp.
GCA_019084505.1	JAHRFS000000000	SAMN19406534	J_8	Desulfomicrobium sp.
GCA_019084485.1	JAHRFU000000000	SAMN19406536	J_13	Desulforudis sp.
GCA_013791995.1	VMSS00000000	SAMN12221359	S2_56	Desulfurivibrio sp.
GCA_019084435.1	JAHRFV000000000	SAMN19406537	J_20	Dethiosulfatibacter sp.
GCA_019084385.1	JAHRFW000000000	SAMN19406538	J_29	Erysipelothrix sp.
GCA_019084525.1	JAHRFR000000000	SAMN19406533	J_10	Hoeflea sp.
GCA_013791775.1	VMTE00000000	SAMN12221371	S2_81	Hyphomonas sp.
GCA_013791785.1	VMTD00000000	SAMN12221370	S2_100	Methanobacteriota archaeon
GCA_019084405.1	JAHRFX000000000	SAMN19407650	J_0	Methanobacterium sp.
GCA_013791595.1	VMTM00000000	SAMN12221379	S2_96	Nitrospirota bacterium
GCA_013791665.1	VMTJ00000000	SAMN12221376	01_170	Nitrospirota bacterium
GCA_013791955.1	VMSW00000000	SAMN12221363	S2_20	Propionicimonas sp.
GCA_013791895.1	VMSY00000000	SAMN12221365	N3_42	Rhizobiaceae bacterium
GCA_013791905.1	VMSX00000000	SAMN12221364	S2_15	Rhodocyclaceae bacterium
GCA_013791765.1	VMTC00000000	SAMN12221369	S3_26	Rhodoferax sp.
GCA_013791855.1	VMTA00000000	SAMN12221367	S2_22	Sideroxydans sp.
GCA_013791705.1	VMTF00000000	SAMN12221372	J_51	Sphingomonadales bacterium
GCA_013791885.1	VMSZ00000000	SAMN12221366	N3_29	Sulfurimonas sp.
GCA_013791695.1	VMTG00000000	SAMN12221373	S2_99	archaeon
GCA_013791675.1	VMTI00000000	SAMN12221375	01_128	bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	59
Data volume, Mbytes	24713

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groundwater metagenome

Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland

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