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Accession: PRJNA484796 ID: 484796

Aphanomyces spp.

Genome sequencing and annotation for Aphanomyces spp. Genome sequencing and assembly

Genome sequencing of Aphanomyces spp.

Accession	PRJNA484796
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Minardi D et al., "New genotyping method for the causative agent of crayfish plague (Aphanomyces astaci) based on whole genome data.", J Invertebr Pathol, 2018 Jul;156:6-13
Submission	Registration date: 6-Aug-2018 University of Exeter
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	62666
WGS master	11
SRA Experiments	15
Protein Sequences	160120
Publications
PubMed	1
Other datasets
BioSample	17
Assembly	11

Assembly details:

Assembly level

Number of Assemblies

Contig

11
11

Assembly	Level	WGS	BioSample	Strain	Taxonomy
GCA_003546785.1		QUTF00000000	SAMN09769394	FDL457	Aphanomyces astaci
GCA_003546805.1		QUTE00000000	SAMN09769445	197901	Aphanomyces astaci
GCA_003546825.1		QUTH00000000	SAMN09768903	Da	Aphanomyces astaci
GCA_003546765.1		QUTG00000000	SAMN09768942	Sv	Aphanomyces astaci
GCA_003546625.1		QUTC00000000	SAMN09768943	SA	Aphanomyces astaci
GCA_003546605.1		QUTA00000000	SAMN09769275	Yx	Aphanomyces astaci
GCA_003546585.1		QUTD00000000	SAMN09769426	D2	Aphanomyces astaci
GCA_003546545.1		QUTB00000000	SAMN09769272	Si	Aphanomyces astaci
GCA_003546565.1		QUSZ00000000	SAMN09769276	Kv	Aphanomyces astaci
GCA_003666305.1		QUTI00000000	SAMN09769691	KB13	Aphanomyces astaci
GCA_003546525.1		QUSY00000000	SAMN09769773	NJM0002	Aphanomyces invadans

SRA Data Details

Parameter	Value
Data volume, Gbases	63
Data volume, Mbytes	39226

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SILVA LSU Database [SILVA]
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