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This umbrella project holds a set of data bioprojects, each representing a laboratory sequencing Staphylococcus sp. in collaboration with GenomeTrakr's open genomic epidemiology surveillance effort for the real-time monitoring of foodborne pathogens. Automated clustering and genotyping results for these data can be found at NCBI Pathogen Detection (link below).
| Accession | PRJNA494553 |
| Type | Umbrella project |
| Publications | Timme RE et al., "Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens.", One Health Outlook, 2020;2(1):20 |
| Submission | Registration date: 3-Oct-2018
FDA Center for Food Safety and Applied Nutrition |
| Related Resources | |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (Genomic DNA) | 19 |
| SRA Experiments | 291 |
| Protein Sequences | 26747 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 288 |
| Assembly | 10 |
Staphylococcus encompasses the following 6 sub-projects:
| Project Type | Number of Projects |
| Genome sequencing |
2
4
6
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJNA718838 | SRA or Trace | Staphylococcus | GenomeTrakr Project: Ohio ADDL Staphylococcus Genome sequencing and assembly (GenomeTrakr Project: Ohio...) | | PRJNA721726 | SRA or Trace | Staphylococcus | GenomeTrakr Project: Washington State Department of Health Staphylococcus genome sequencing and assemblies (GenomeTrakr Project: Washington...) | | PRJNA494566 | Complete genome | Staphylococcus aureus | GenomeTrakr Project: US Food and Drug Administration - CFSAN (FDA Center for Food Safety...) | | PRJNA541975 | Complete genome | Staphylococcus aureus | GenomeTrakr Project: U.S. Food and Drug Administration - CFSAN (FDA Center for Food Safety...) | | PRJNA800787 | SRA or Trace | Staphylococcus aureus | MRSA - Genome Trakr project Raw sequence reads (FDA CVM NARMS-Minnesota DOH) | | PRJNA748688 | SRA or Trace | Staphylococcus sp. | GenomeTrakr Project: Staphylococcus sp., New York State Department of Health, Wadsworth Center (New York State GenomeTrakr) |
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