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Accession: PRJNA495050 ID: 495050

hydrothermal vent metagenome

16S rRNA gene amplicon sequencing and metagenome-assembled genomes (MAGs) sequencing and assembly from the Eastern Lau Spreading Center

Sequencing and assembly of metagenome-assembled genomes (MAGs) and sequencing of 16S rRNA gene amplicons from deep-sea hydrothermal vents at the Eastern Lau Spreading Center
AccessionPRJNA495050
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismhydrothermal vent metagenome[Taxonomy ID: 652676]
unclassified sequences; metagenomes; ecological metagenomes; hydrothermal vent metagenome
Publications (total 7)
  • St John E et al., "Genomic comparison of deep-sea hydrothermal genera related to Aeropyrum, Thermodiscus and Caldisphaera, and proposed emended description of the family Acidilobaceae.", Syst Appl Microbiol, 2024 May;47(2-3):126507
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SubmissionRegistration date: 21-Feb-2019
Portland State University
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)137
WGS master33
SRA Experiments48
Publications
PubMed6
PMC3
Other datasets
BioSample71
Assembly33
Assembly details:
Assembly levelNumber of Assemblies
33
33
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_021650775.1ContigJAHSRM000000000SAMN19948827
T2-175
GCA_035175045.1ContigWWDU00000000SAMN13706328
M2_131_esom
GCA_037928875.1ContigJAGSHL000000000SAMN18742755
M2_74_esom
GCA_035616075.1ContigJAAMVF000000000SAMN14146172
M1_30_esom
GCA_035594205.1ContigJAAMVG000000000SAMN14146173
M2_139_esom
GCA_029856025.1ContigJAGSHQ000000000SAMN18747747
TNS08_bin003
GCA_029855985.1ContigJAGSHR000000000SAMN18747748
A173
GCA_029855995.1ContigJAGSHS000000000SAMN18747749
A3132
GCA_029855965.1ContigJAGSHO000000000SAMN18742758
A381
GCA_029855935.1ContigJAGSHN000000000SAMN18742757
A361
GCA_029855925.1ContigJAGSHP000000000SAMN18742759
A399
GCA_035615895.1ContigWWDP00000000SAMN13706323
A1_248_esom
GCA_035615855.1ContigWWDQ00000000SAMN13706324
A3_219_esom
GCA_035615795.1ContigWWDW00000000SAMN13706330
T10_99_esom
GCA_035615775.1ContigWWDT00000000SAMN13706327
M2_116_esom
GCA_035615735.1ContigWWDX00000000SAMN13706331
T11_124_esom
GCA_035615695.1ContigWWEB00000000SAMN13706335
T2_230_esom
GCA_037928855.1ContigJAGSHM000000000SAMN18742756
M2_163_esom
GCA_035615675.1ContigWWDZ00000000SAMN13706333
T2_100_esom
GCA_035615655.1ContigWWEA00000000SAMN13706334
T2_171_esom
GCA_035615755.1ContigWWDV00000000SAMN13706329
T10_69_esom
GCA_035615835.1ContigWWDR00000000SAMN13706325
M17_107_esom
GCA_035615815.1ContigWWDS00000000SAMN13706326
M17_132_esom
GCA_035615915.1ContigWWDM00000000SAMN13706320
A1_127_esom
GCA_035615715.1ContigWWDY00000000SAMN13706332
T11_67_esom
GCA_024490875.1ContigJACCLX000000000SAMN15465779
T11_73
GCA_004285895.1ContigRZJO00000000SAMN10218191
M10-121
GCA_035615875.1ContigWWDN00000000SAMN13706321
A1_148_esom
GCA_035615945.1ContigWWDO00000000SAMN13706322
A1_199_esom
GCA_037928815.1ContigJACXSE000000000SAMN16124684
A1_219
GCA_037928685.1ContigJACXSF000000000SAMN16124687
T2_223
GCA_037928645.1ContigJACXSG000000000SAMN16124688
T10_58
GCA_037928635.1ContigJACXSH000000000SAMN16124689
V2_44
SRA Data Details
ParameterValue
Data volume, Gbases524
Data volume, Tbytes0.24

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    hydrothermal vent metagenome
    16S rRNA gene amplicon sequencing and metagenome-assembled genomes (MAGs) sequencing and assembly from the Eastern Lau Spreading Center
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