Bacteria (ID 496358) - BioProject

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Accession: PRJNA496358 ID: 496358

Bacteria

Genomes of 49 bacteria species isolated from stool from healthy individuals

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This project is a component of the The Lactobacillus genus, a use case for Bactopia.

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Genomes of 49 bacteria species isolated from stool from healthy individuals

Accession	PRJNA496358
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Jiang X et al., "Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut.", Science, 2019 Jan 11;363(6423):181-187
Submission	Registration date: 11-Feb-2019 Broad Institute
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3346
WGS master	49
SRA Experiments	49
Protein Sequences	156867
Publications
PubMed	1
PMC	1
Other datasets
BioSample	49
Assembly	49

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

49
49

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_004168105.1	RCXB00000000	SAMN10239579	am_0171	Akkermansia muciniphila
GCA_004167605.1	RCXD00000000	SAMN10239580	aa_0143	Akkermansia sp. aa_0143
GCA_004167925.1	RCXA00000000	SAMN10239561	aa_0143	Alistipes finegoldii
GCA_004168145.1	RCXC00000000	SAMN10239562	am_0171	Alistipes onderdonkii
GCA_004167345.1	RCXH00000000	SAMN10239563	bj_0095	Bacteroides caccae
GCA_004167865.1	RCXI00000000	SAMN10239564	bk_0021	Bacteroides cellulosilyticus
GCA_004168485.1	RCXL00000000	SAMN10239566	bj_0095	Bacteroides eggerthii
GCA_004167845.1	RCXM00000000	SAMN10239567	bf_0095	Bacteroides faecis
GCA_004167855.1	RCXN00000000	SAMN10239568	am_0171	Bacteroides fragilis
GCA_004167745.1	RCXO00000000	SAMN10239569	bf_0095	Bacteroides intestinalis
GCA_004167785.1	RCXR00000000	SAMN10239570	am_0171	Bacteroides ovatus
GCA_004167545.1	RCXT00000000	SAMN10239571	am_0171	Bacteroides salyersiae
GCA_004167795.1	RCXV00000000	SAMN10239572	am_0070	Bacteroides stercoris
GCA_004167525.1	RCXW00000000	SAMN10239573	bq_0049	Bacteroides thetaiotaomicron
GCA_004167505.1	RCXX00000000	SAMN10239574	ca_0067	Bacteroides uniformis
GCA_004167295.1	RCXZ00000000	SAMN10239576	bq_0049	Bacteroides xylanisolvens
GCA_004167585.1	RCXE00000000	SAMN10239583	ca_0067	Bifidobacterium adolescentis
GCA_004167905.1	RCXF00000000	SAMN10239584	co_0103	Bifidobacterium animalis
GCA_004167365.1	RCXG00000000	SAMN10239585	ca_0067	Bifidobacterium bifidum
GCA_004167735.1	RCXJ00000000	SAMN10239586	cx_0004	Bifidobacterium dentium
GCA_004167725.1	RCXP00000000	SAMN10239587	bk_0021	Bifidobacterium longum
GCA_004167565.1	RCXS00000000	SAMN10239588	ca_0067	Bifidobacterium pseudocatenulatum
GCA_004167815.1	RCXQ00000000	SAMN10239541	af_0058	Blautia obeum
GCA_004167315.1	RCXU00000000	SAMN10239542	aa_0143	Blautia sp. aa_0143
GCA_004168205.1	RCYB00000000	SAMN10239543	co_0103	Catenibacterium sp. co_0103
GCA_004167485.1	RCYA00000000	SAMN10239581	ca_0067	Citrobacter amalonaticus
GCA_004167045.1	RCYO00000000	SAMN10239589	bj_0095	Cutibacterium acnes
GCA_004167275.1	RCYC00000000	SAMN10239544	bj_0095	Dorea longicatena
GCA_004167095.1	RCYE00000000	SAMN10239545	am_0171	Enterococcus durans
GCA_004167465.1	RCYF00000000	SAMN10239546	bz_0080	Enterococcus hirae
GCA_004167255.1	RCYG00000000	SAMN10239547	am_0171	Enterococcus mundtii
GCA_004166955.1	RCYD00000000	SAMN10239582	am_0025	Escherichia coli
GCA_004167445.1	RCYH00000000	SAMN10239548	aa_0143	Eubacterium ramulus
GCA_004167425.1	RCYI00000000	SAMN10239549	am_0171	Eubacterium sp. am_0171
GCA_004167405.1	RCYJ00000000	SAMN10239550	aa_0143	Faecalibacterium prausnitzii
GCA_004167215.1	RCYL00000000	SAMN10239551	co_0103	Lacticaseibacillus paracasei
GCA_004167055.1	RCYM00000000	SAMN10239552	co_0103	Lacticaseibacillus rhamnosus
GCA_004167235.1	RCYK00000000	SAMN10239554	aa_0143	Leuconostoc lactis
GCA_004167385.1	RCYN00000000	SAMN10239553	bz_0080	Ligilactobacillus ruminis
GCA_004167065.1	RCYP00000000	SAMN10239577	cx_0004	Parabacteroides distasonis
GCA_004166975.1	RCYQ00000000	SAMN10239578	bq_0049	Parabacteroides merdae
GCA_004168495.1	RCXK00000000	SAMN10239565	aa_0143	Phocaeicola dorei
GCA_004167625.1	RCXY00000000	SAMN10239575	am_0224	Phocaeicola vulgatus
GCA_004166995.1	RCYS00000000	SAMN10239556	bf_0095	Streptococcus parasanguinis
GCA_004166915.1	RCYT00000000	SAMN10239557	bf_0095	Streptococcus salivarius
GCA_004166885.1	RCYU00000000	SAMN10239558	bf_0095	Streptococcus sp. bf_0095
GCA_004166965.1	RCYV00000000	SAMN10239559	am_0171	Turicibacter sanguinis
GCA_004166985.1	RCYW00000000	SAMN10239560	bj_0095	Veillonella dispar
GCA_004167165.1	RCYR00000000	SAMN10239555	aa_0143	[Ruminococcus] torques

SRA Data Details

Parameter	Value
Data volume, Gbases	31
Data volume, Mbytes	13325

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Genomes of 49 bacteria species isolated from stool from healthy individuals

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