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Accession: PRJNA507471 ID: 507471

Salmonella enterica

Municipal wastewater Salmonella enterica isolate genome assemblies

See Genome Information for Salmonella enterica
De novo assemblies of Salmonella enterica isolates from municipal wastewater to search for genes of interest (antibiotic resistance, virulence, etc.).
AccessionPRJNA507471
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismSalmonella enterica[Taxonomy ID: 28901]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica
PublicationsDiemert S et al., "Clinically Unreported Salmonellosis Outbreak Detected via Comparative Genomic Analysis of Municipal Wastewater Salmonella Isolates.", Appl Environ Microbiol, 2019 May 15;85(10)
Grants
  • "Transform Municipal Wastewater Treatment Systems into Community Enteric Disease Information Network" (Grant ID CBET-1507979, National Science Foundation)
SubmissionRegistration date: 19-Jun-2019
Water Quality and Environmental Biotechnology Lab
Related Resources
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)31175
WGS master273
Protein Sequences1239481
Publications
PubMed1
PMC1
Other datasets
BioSample273
Assembly273
Assembly details:
Assembly levelNumber of Assemblies
109
164
273
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_007558945.1ScaffoldVLSO00000000SAMN11877235
HIY0023
GCA_007558905.1ScaffoldVLSM00000000SAMN11877244
HIY0041
GCA_007558895.1ScaffoldVLSN00000000SAMN11877242
HIY0037
GCA_007558885.1ScaffoldVLSP00000000SAMN11877224
HIY0007
GCA_007558245.1ScaffoldVLSL00000000SAMN11877248
HIY0045
GCA_007558205.1ScaffoldVLRT00000000SAMN11877302
HIY0117
GCA_007558165.1ScaffoldVLSI00000000SAMN11877264
HIY0062
GCA_007558215.1ScaffoldVLSA00000000SAMN11877288
HIY0103
GCA_007558105.1ScaffoldVLSD00000000SAMN11877282
HIY0089
GCA_007558145.1ContigVLSC00000000SAMN11877284
HIY0092
GCA_007558155.1ScaffoldVLSK00000000SAMN11877259
HIY0057
GCA_007558115.1ContigVLRS00000000SAMN11877309
HIY0124
GCA_007558075.1ContigVLRV00000000SAMN11877296
HIY0111
GCA_007557885.1ScaffoldVLSG00000000SAMN11877271
HIY0069
GCA_007557995.1ScaffoldVLSH00000000SAMN11877269
HIY0067
GCA_007558045.1ScaffoldVLRY00000000SAMN11877293
HIY0108
GCA_007558025.1ScaffoldVLSE00000000SAMN11877275
HIY0073
GCA_007557985.1ScaffoldVLSB00000000SAMN11877287
HIY0101
GCA_007558015.1ScaffoldVLSJ00000000SAMN11877260
HIY0058
GCA_007557815.1ScaffoldVLRN00000000SAMN11877328
HIY0143
GCA_007557955.1ScaffoldVLRW00000000SAMN11877295
HIY0110
GCA_007557945.1ScaffoldVLRZ00000000SAMN11877292
HIY0107
GCA_007557785.1ScaffoldVLRE00000000SAMN11877361
HIY0182
GCA_007557895.1ScaffoldVLRX00000000SAMN11877294
HIY0109
GCA_007557905.1ScaffoldVLRU00000000SAMN11877297
HIY0112
GCA_007557825.1ContigVLRC00000000SAMN11877366
HIY0187
GCA_007557665.1ScaffoldVLQP00000000SAMN11877393
HIY0228
GCA_007557805.1ScaffoldVLRJ00000000SAMN11877343
HIY0159
GCA_007557795.1ContigVLRD00000000SAMN11877363
HIY0184
GCA_007557715.1ScaffoldVLSF00000000SAMN11877274
HIY0072
GCA_007557685.1ScaffoldVLQF00000000SAMN11877422
HIY0284
GCA_007557745.1ScaffoldVLRR00000000SAMN11877320
HIY0135
GCA_007557705.1ScaffoldVLRP00000000SAMN11877325
HIY0140
GCA_007557635.1ScaffoldVLQD00000000SAMN11877426
HIY0301
GCA_007557645.1ScaffoldVLQE00000000SAMN11877423
HIY0285
GCA_007557575.1ScaffoldVLQM00000000SAMN11877403
HIY0252
GCA_007557585.1ScaffoldVLQJ00000000SAMN11877408
HIY0261
GCA_007557625.1ContigVLQV00000000SAMN11877385
HIY0211
GCA_007557545.1ScaffoldVLRK00000000SAMN11877339
HIY0155
GCA_007557535.1ScaffoldVLQQ00000000SAMN11877391
HIY0224
GCA_007557515.1ScaffoldVLQK00000000SAMN11877407
HIY0260
GCA_007557495.1ScaffoldVLQT00000000SAMN11877388
HIY0214
GCA_007557455.1ScaffoldVLQR00000000SAMN11877390
HIY0220
GCA_007557475.1ScaffoldVLQS00000000SAMN11877389
HIY0219
GCA_007557375.1ScaffoldVLQN00000000SAMN11877398
HIY0238
GCA_007557335.1ScaffoldVLQB00000000SAMN11877433
HIY0313
GCA_007557425.1ScaffoldVLQC00000000SAMN11877430
HIY0306
GCA_007557435.1ScaffoldVLQI00000000SAMN11877415
HIY0271
GCA_007557395.1ContigVLQY00000000SAMN11877377
HIY0201
GCA_007557365.1ScaffoldVLPZ00000000SAMN11877437
HIY0325
GCA_007557325.1ContigVLPX00000000SAMN11877440
HIY0333
GCA_007557275.1ScaffoldVLQG00000000SAMN11877418
HIY0276
GCA_007557295.1ScaffoldVLQO00000000SAMN11877395
HIY0230
GCA_007557265.1ContigVLQX00000000SAMN11877380
HIY0206
GCA_007557215.1ContigVLRG00000000SAMN11877355
HIY0176
GCA_007557225.1ScaffoldVLRI00000000SAMN11877345
HIY0161
GCA_007557195.1ScaffoldVLPU00000000SAMN11877459
HIY0402
GCA_007557185.1ScaffoldVLRL00000000SAMN11877338
HIY0153
GCA_007557145.1ScaffoldVLRQ00000000SAMN11877324
HIY0139
GCA_007557115.1ScaffoldVLRB00000000SAMN11877368
HIY0190
GCA_007557125.1ScaffoldVLRH00000000SAMN11877353
HIY0172
GCA_007557105.1ScaffoldVLRO00000000SAMN11877327
HIY0142
GCA_007557055.1ScaffoldVLRF00000000SAMN11877359
HIY0180
GCA_007557065.1ScaffoldVLRM00000000SAMN11877332
HIY0147
GCA_007557045.1ContigVLQZ00000000SAMN11877374
HIY0196
GCA_007557025.1ScaffoldVLQL00000000SAMN11877404
HIY0256
GCA_007556985.1ContigVLQW00000000SAMN11877384
HIY0210
GCA_007556965.1ScaffoldVLPV00000000SAMN11877456
HIY0391
GCA_007556955.1ScaffoldVLPY00000000SAMN11877439
HIY0332
GCA_007556945.1ContigVLRA00000000SAMN11877371
HIY0193
GCA_007556865.1ScaffoldVLPW00000000SAMN11877441
HIY0350
GCA_007556875.1ScaffoldVLQU00000000SAMN11877386
HIY0212
GCA_007556895.1ScaffoldVLQH00000000SAMN11877416
HIY0274
GCA_007556855.1ScaffoldVLQA00000000SAMN11877436
HIY0321
GCA_007352895.1ScaffoldVIOD00000000SAMN12175500
HIY0215
GCA_007352905.1ScaffoldVIOE00000000SAMN12175499
HIY0205
GCA_007352885.1ScaffoldVIOC00000000SAMN12175501
HIY0216
GCA_007352875.1ScaffoldVIOB00000000SAMN12175502
HIY0217
GCA_007352845.1ScaffoldVINZ00000000SAMN12175504
HIY0222
GCA_007352835.1ScaffoldVIOA00000000SAMN12175503
HIY0218
GCA_007352795.1ScaffoldVINY00000000SAMN12175505
HIY0223
GCA_007352775.1ScaffoldVINX00000000SAMN12175506
HIY0225
GCA_007352785.1ScaffoldVINW00000000SAMN12175507
HIY0227
GCA_007352735.1ScaffoldVINV00000000SAMN12175508
HIY0231
GCA_007352715.1ScaffoldVINT00000000SAMN12175510
HIY0233
GCA_007352705.1ScaffoldVINS00000000SAMN12175511
HIY0235
GCA_007352685.1ScaffoldVINU00000000SAMN12175509
HIY0232
GCA_007625005.1ContigVMKI00000000SAMN11877375
HIY0197
GCA_003934545.3ContigRSBL00000000SAMN10496246
HIY0385
GCA_003934555.3ContigRSBM00000000SAMN10496247
HIY0081
GCA_003934505.3ContigRSBI00000000SAMN10496244
HIY0401
GCA_003934515.3ContigRSBJ00000000SAMN10496243
HIY0395
GCA_003934615.3ContigRSBK00000000SAMN10496248
HIY0386
GCA_003934875.3ScaffoldRSCA00000000SAMN10496253
HIY0001
GCA_003934835.3ContigRSBY00000000SAMN10496252
HIY0003
GCA_003934895.3ContigRSBZ00000000SAMN10496250
HIY0002
GCA_003934805.3ContigRSBW00000000SAMN10496249
HIY0005
GCA_003934705.3ContigRSBU00000000SAMN10496254
HIY0013
GCA_003934775.3ScaffoldRSCC00000000SAMN10496242
HIY0009
GCA_003934715.3ContigRSBT00000000SAMN10496255
HIY0021
GCA_003934785.3ScaffoldRSBX00000000SAMN10496251
HIY0004
GCA_003934695.3ContigRSBS00000000SAMN10496256
HIY0022
GCA_003934595.3ContigRSCB00000000SAMN10496258
HIY0034
GCA_003934685.3ContigRSBR00000000SAMN10496260
HIY0027
GCA_003934675.3ContigRSBO00000000SAMN10496257
HIY0033
GCA_003934495.3ContigRSBN00000000SAMN10496245
HIY0038
GCA_003934605.3ContigRSBQ00000000SAMN10496259
HIY0029
GCA_003934635.3ContigRSBP00000000SAMN10496241
HIY0030
GCA_003934795.2ContigRSBV00000000SAMN10496240
HIY0011
GCA_006380205.2ContigVCWH00000000SAMN11877311
HIY0126
GCA_006379435.2ScaffoldVCUA00000000SAMN11877402
HIY0251
GCA_006379965.2ContigVCVM00000000SAMN11877340
HIY0156
GCA_006227495.2ScaffoldVDEJ00000000SAMN11877223
HIY0006
GCA_006227465.2ScaffoldVDEG00000000SAMN11877227
HIY0012
GCA_006227575.2ScaffoldVDEF00000000SAMN11877228
HIY0014
GCA_006227475.2ScaffoldVDED00000000SAMN11877230
HIY0016
GCA_006227535.2ContigVDEE00000000SAMN11877229
HIY0015
GCA_006227485.2ContigVDEI00000000SAMN11877225
HIY0008
GCA_006227425.2ScaffoldVDEC00000000SAMN11877231
HIY0017
GCA_006227585.2ContigVDEH00000000SAMN11877226
HIY0010
GCA_006227395.2ContigVDEB00000000SAMN11877232
HIY0018
GCA_006227375.2ContigVDEA00000000SAMN11877233
HIY0019
GCA_006227385.2ContigVDDZ00000000SAMN11877234
HIY0020
GCA_006227365.2ScaffoldVDDY00000000SAMN11877236
HIY0024
GCA_006227275.2ContigVDDV00000000SAMN11877239
HIY0032
GCA_006227345.2ContigVDDX00000000SAMN11877237
HIY0026
GCA_006227255.2ContigVDDT00000000SAMN11877241
HIY0036
GCA_006227315.2ContigVDDW00000000SAMN11877238
HIY0031
GCA_006227265.2ContigVDDU00000000SAMN11877240
HIY0035
GCA_006381605.2ContigVCYA00000000SAMN11877245
HIY0042
GCA_006381565.2ScaffoldVCXY00000000SAMN11877247
HIY0044
GCA_006227195.2ScaffoldVDDS00000000SAMN11877243
HIY0039
GCA_006381595.2ContigVCXZ00000000SAMN11877246
HIY0043
GCA_006381555.2ContigVCXX00000000SAMN11877249
HIY0046
GCA_006381505.2ContigVCXU00000000SAMN11877252
HIY0049
GCA_006381515.2ContigVCXW00000000SAMN11877250
HIY0047
GCA_006381405.2ContigVCXV00000000SAMN11877251
HIY0048
GCA_006381485.2ContigVCXS00000000SAMN11877254
HIY0051
GCA_006381315.2ScaffoldVCXQ00000000SAMN11877256
HIY0054
GCA_006381345.2ContigVCXR00000000SAMN11877255
HIY0053
GCA_006380555.2ContigVCXO00000000SAMN11877258
HIY0056
GCA_006380785.2ContigVCXP00000000SAMN11877257
HIY0055
GCA_006380485.2ContigVCXL00000000SAMN11877263
HIY0061
GCA_006380455.2ContigVCXK00000000SAMN11877266
HIY0064
GCA_006381305.2ContigVCXJ00000000SAMN11877267
HIY0065
GCA_006381465.2ContigVCXG00000000SAMN11877272
HIY0070
GCA_006381295.2ContigVCXI00000000SAMN11877268
HIY0066
GCA_006381455.2ContigVCXH00000000SAMN11877270
HIY0068
GCA_006380445.2ContigVCXF00000000SAMN11877273
HIY0071
GCA_006380405.2ContigVCXE00000000SAMN11877276
HIY0074
GCA_006381415.2ContigVCXA00000000SAMN11877280
HIY0082
GCA_006381225.2ContigVCXC00000000SAMN11877278
HIY0078
GCA_006381205.2ScaffoldVCXD00000000SAMN11877277
HIY0075
GCA_006381235.2ScaffoldVCWZ00000000SAMN11877281
HIY0083
GCA_006380375.2ScaffoldVCWV00000000SAMN11877289
HIY0104
GCA_006381195.2ScaffoldVCWU00000000SAMN11877290
HIY0105
GCA_006380315.2ContigVCWR00000000SAMN11877299
HIY0114
GCA_006381265.2ScaffoldVCWT00000000SAMN11877291
HIY0106
GCA_006381395.2ContigVCWP00000000SAMN11877301
HIY0116
GCA_006381125.2ScaffoldVCWO00000000SAMN11877303
HIY0118
GCA_006380795.2ContigVCWN00000000SAMN11877304
HIY0119
GCA_006380715.2ContigVCWM00000000SAMN11877305
HIY0120
GCA_006380275.2ContigVCWL00000000SAMN11877306
HIY0121
GCA_006380245.2ContigVCWK00000000SAMN11877307
HIY0122
GCA_006380225.2ContigVCWJ00000000SAMN11877308
HIY0123
GCA_006380755.2ContigVCWG00000000SAMN11877312
HIY0127
GCA_006381135.2ContigVCWI00000000SAMN11877310
HIY0125
GCA_006380185.2ContigVCWF00000000SAMN11877313
HIY0128
GCA_006380145.2ScaffoldVCWE00000000SAMN11877314
HIY0129
GCA_006380135.2ContigVCWD00000000SAMN11877315
HIY0130
GCA_006380165.2ContigVCWC00000000SAMN11877316
HIY0131
GCA_006380095.2ContigVCWA00000000SAMN11877318
HIY0133
GCA_006380105.2ContigVCWB00000000SAMN11877317
HIY0132
GCA_006380685.2ContigVCVZ00000000SAMN11877319
HIY0134
GCA_006380045.2ContigVCVY00000000SAMN11877321
HIY0136
GCA_006380695.2ScaffoldVCVX00000000SAMN11877322
HIY0137
GCA_006380025.2ContigVCVW00000000SAMN11877323
HIY0138
GCA_006380655.2ContigVCVU00000000SAMN11877329
HIY0144
GCA_006380005.2ContigVCVT00000000SAMN11877330
HIY0145
GCA_006380035.2ContigVCVV00000000SAMN11877326
HIY0141
GCA_006380645.2ContigVCVS00000000SAMN11877331
HIY0146
GCA_006379995.2ContigVCVR00000000SAMN11877333
HIY0148
GCA_006380635.2ContigVCVQ00000000SAMN11877334
HIY0149
GCA_006379925.2ScaffoldVCVP00000000SAMN11877335
HIY0150
GCA_006380605.2ContigVCVO00000000SAMN11877336
HIY0151
GCA_006379905.2ContigVCVL00000000SAMN11877341
HIY0157
GCA_006379915.2ContigVCVN00000000SAMN11877337
HIY0152
GCA_006380585.2ContigVCVK00000000SAMN11877342
HIY0158
GCA_006379845.2ContigVCVI00000000SAMN11877346
HIY0162
GCA_006379895.2ContigVCVJ00000000SAMN11877344
HIY0160
GCA_006379835.2ContigVCVG00000000SAMN11877348
HIY0164
GCA_006379825.2ContigVCVH00000000SAMN11877347
HIY0163
GCA_006379785.2ScaffoldVCVE00000000SAMN11877350
HIY0168
GCA_006379775.2ScaffoldVCVD00000000SAMN11877351
HIY0169
GCA_006379815.2ContigVCVF00000000SAMN11877349
HIY0166
GCA_006379735.2ScaffoldVCVC00000000SAMN11877352
HIY0171
GCA_006379725.2ContigVCVB00000000SAMN11877354
HIY0174
GCA_006379665.2ContigVCUW00000000SAMN11877362
HIY0183
GCA_006379685.2ContigVCUX00000000SAMN11877360
HIY0181
GCA_006379715.2ContigVCVA00000000SAMN11877356
HIY0177
GCA_006379645.2ContigVCUV00000000SAMN11877364
HIY0185
GCA_006379625.2ContigVCUU00000000SAMN11877365
HIY0186
GCA_006379605.2ContigVCUS00000000SAMN11877369
HIY0191
GCA_006379565.2ContigVCUR00000000SAMN11877370
HIY0192
GCA_006378565.2ContigVCUT00000000SAMN11877367
HIY0189
GCA_006378525.2ContigVCUP00000000SAMN11877373
HIY0195
GCA_006379585.2ContigVCUO00000000SAMN11877376
HIY0198
GCA_006379555.2ScaffoldVCUN00000000SAMN11877378
HIY0203
GCA_006378535.2ContigVCUM00000000SAMN11877379
HIY0204
GCA_006379525.2ContigVCUK00000000SAMN11877382
HIY0208
GCA_006379475.2ContigVCUG00000000SAMN11877394
HIY0229
GCA_006379485.2ContigVCUE00000000SAMN11877397
HIY0236
GCA_006379465.2ContigVCUB00000000SAMN11877401
HIY0249
GCA_006378375.2ContigVCUF00000000SAMN11877396
HIY0234
GCA_006378435.2ContigVCUD00000000SAMN11877399
HIY0240
GCA_006378385.2ContigVCUC00000000SAMN11877400
HIY0243
GCA_006379455.2ContigVCTR00000000SAMN11877417
HIY0275
GCA_006378185.2ContigVCTT00000000SAMN11877413
HIY0266
GCA_006378165.2ContigVCTQ00000000SAMN11877419
HIY0281
GCA_006378155.2ContigVCTP00000000SAMN11877420
HIY0282
GCA_006379415.2ContigVCTM00000000SAMN11877425
HIY0287
GCA_006378115.2ContigVCTN00000000SAMN11877424
HIY0286
GCA_006377925.2ContigVCTO00000000SAMN11877421
HIY0283
GCA_006377915.2ContigVCTL00000000SAMN11877427
HIY0302
GCA_006378085.2ContigVCTK00000000SAMN11877428
HIY0304
GCA_006379325.2ScaffoldVCTJ00000000SAMN11877429
HIY0305
GCA_006377855.2ScaffoldVCTE00000000SAMN11877438
HIY0327
GCA_006378045.2ContigVCTI00000000SAMN11877431
HIY0307
GCA_006378005.2ScaffoldVCTG00000000SAMN11877434
HIY0316
GCA_006378065.2ContigVCTH00000000SAMN11877432
HIY0310
GCA_006377835.2ContigVCTF00000000SAMN11877435
HIY0317
GCA_006377735.2ContigVCTA00000000SAMN11877445
HIY0359
GCA_006377845.2ContigVCTC00000000SAMN11877443
HIY0354
GCA_006377825.2ContigVCTD00000000SAMN11877442
HIY0352
GCA_006377815.2ContigVCTB00000000SAMN11877444
HIY0357
GCA_006378025.2ContigVCSZ00000000SAMN11877446
HIY0360
GCA_006377725.2ContigVCSV00000000SAMN11877450
HIY0374
GCA_006377715.2ContigVCSU00000000SAMN11877451
HIY0375
GCA_006377965.2ContigVCSY00000000SAMN11877447
HIY0367
GCA_006377755.2ContigVCSW00000000SAMN11877449
HIY0373
GCA_006377745.2ContigVCSX00000000SAMN11877448
HIY0372
GCA_006377625.2ContigVCSS00000000SAMN11877453
HIY0381
GCA_006377645.2ContigVCST00000000SAMN11877452
HIY0378
GCA_006377955.2ContigVCSP00000000SAMN11877457
HIY0392
GCA_006377975.2ContigVCSR00000000SAMN11877454
HIY0384
GCA_006377675.2ContigVCSQ00000000SAMN11877455
HIY0389
GCA_006377615.2ScaffoldVCSN00000000SAMN11877460
HIY0408
GCA_006377635.2ScaffoldVCSO00000000SAMN11877458
HIY0394
GCA_006380525.2ContigVCXN00000000SAMN11877261
HIY0059
GCA_006380515.2ContigVCSM00000000SAMN11877265
HIY0063
GCA_006380545.2ContigVCXM00000000SAMN11877262
HIY0060
GCA_006380355.2ContigVCWX00000000SAMN11877285
HIY0095
GCA_006380775.2ContigVCXB00000000SAMN11877279
HIY0079
GCA_006380425.2ScaffoldVCWY00000000SAMN11877283
HIY0091
GCA_006380365.2ContigVCWW00000000SAMN11877286
HIY0100
GCA_006380305.2ContigVCWS00000000SAMN11877298
HIY0113
GCA_006378595.2ContigVCUY00000000SAMN11877358
HIY0179
GCA_006378625.2ContigVCUZ00000000SAMN11877357
HIY0178
GCA_006380295.2ContigVCWQ00000000SAMN11877300
HIY0115
GCA_006378515.2ContigVCUQ00000000SAMN11877372
HIY0194
GCA_006378485.2ContigVCUL00000000SAMN11877381
HIY0207
GCA_006378415.2ContigVCUH00000000SAMN11877392
HIY0226
GCA_006378475.2ContigVCUJ00000000SAMN11877383
HIY0209
GCA_006378355.2ContigVCTZ00000000SAMN11877405
HIY0257
GCA_006378295.2ContigVCTX00000000SAMN11877409
HIY0262
GCA_006378315.2ContigVCTY00000000SAMN11877406
HIY0259
GCA_006378175.2ContigVCTS00000000SAMN11877414
HIY0269
GCA_006378255.2ContigVCTU00000000SAMN11877412
HIY0265
GCA_006378275.2ScaffoldVCTW00000000SAMN11877410
HIY0263
GCA_009735395.1ScaffoldWOUB00000000SAMN13386514
HIY0244
GCA_006381365.1ContigVCXT00000000SAMN11877253
HIY0050
GCA_006378395.1ContigVCUI00000000SAMN11877387
HIY0213
GCA_006378305.1ScaffoldVCTV00000000SAMN11877411
HIY0264

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