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Accession: PRJNA517182 ID: 517182

rhizosphere metagenome

Soil Metagenomes from Mediterranean grasslands of California

Mediterranean ecosystems and grasslands are considered among the most vulnerable to biodiversity loss due to global environmental change. More...
AccessionPRJNA517182
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismrhizosphere metagenome[Taxonomy ID: 939928]
unclassified sequences; metagenomes; ecological metagenomes; rhizosphere metagenome
PublicationsNuccio EE et al., "Niche differentiation is spatially and temporally regulated in the rhizosphere.", ISME J, 2020 Apr;14(4):999-1014
SubmissionRegistration date: 10-Dec-2021
Lawrence Berkeley National Laboratory
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)63
SRA Experiments33
Publications
PubMed1
PMC1
Other datasets
BioSample74
Assembly63
Assembly details:
Assembly levelNumber of Assemblies
63
63
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_021154605.1ContigJAJKIF000000000SAMN10827337
b7_HoplandSoilSeptJan
GCA_021154895.1ContigJAJKHR000000000SAMN10827320
b27_HoplandSoilSeptJan
GCA_021154825.1ContigJAJKHT000000000SAMN10827322
b50_HoplandSoilSeptJan
GCA_021154835.1ContigJAJKHU000000000SAMN10827324
b92_HoplandSoilSeptJan
GCA_021154625.1ContigJAJKIG000000000SAMN10827338
b70_HoplandSoilSeptJan
GCA_021154765.1ContigJAJKHY000000000SAMN10827329
b32_HoplandSoilSeptJan
GCA_021154805.1ContigJAJKHW000000000SAMN10827326
b19_HoplandSoilSeptJan
GCA_021154205.1ContigJAJKJA000000000SAMN10827361
b14_HoplandSoilSeptJan
GCA_021153725.1ContigJAJKJS000000000SAMN10827381
b83_HoplandSoilSeptJan
GCA_021154385.1ContigJAJKIQ000000000SAMN10827351
b30_HoplandSoilSeptJan
GCA_021153925.1ContigJAJKJN000000000SAMN10827376
b71_HoplandSoilSeptJan
GCA_021153675.1ContigJAJKJV000000000SAMN10827384
b94_HoplandSoilSeptJan
GCA_021153905.1ContigJAJKJO000000000SAMN10827377
b72_HoplandSoilSeptJan
GCA_021154685.1ContigJAJKIC000000000SAMN10827333
b51_HoplandSoilSeptJan
GCA_021153765.1ContigJAJKJR000000000SAMN10827380
b81_HoplandSoilSeptJan
GCA_021153815.1ContigJAJKJQ000000000SAMN10827379
b8_HoplandSoilSeptJan
GCA_021154505.1ContigJAJKIK000000000SAMN10827345
b45_HoplandSoilSeptJan
GCA_021154485.1ContigJAJKIM000000000SAMN10827347
b74_HoplandSoilSeptJan
GCA_021154585.1ContigJAJKIJ000000000SAMN10827344
b4_HoplandSoilSeptJan
GCA_021154545.1ContigJAJKIH000000000SAMN10827342
b12_HoplandSoilSeptJan
GCA_021153445.1ContigJAJKJY000000000SAMN10827387
b41_HoplandSoilSeptJan
GCA_021154415.1ContigJAJKJX000000000SAMN10827386
b11_HoplandSoilSeptJan
GCA_021154185.1ContigJAJKIZ000000000SAMN10827360
b1_HoplandSoilSeptJan
GCA_021154245.1ContigJAJKIX000000000SAMN10827358
b67_HoplandSoilSeptJan
GCA_021154285.1ContigJAJKIV000000000SAMN10827356
b76_HoplandSoilSeptJan
GCA_021154345.1ContigJAJKIT000000000SAMN10827354
b5_HoplandSoilSeptJan
GCA_021154325.1ContigJAJKIR000000000SAMN10827352
b28_HoplandSoilSeptJan
GCA_021154305.1ContigJAJKIU000000000SAMN10827355
b64_HoplandSoilSeptJan
GCA_021154365.1ContigJAJKIS000000000SAMN10827353
b40_HoplandSoilSeptJan
GCA_021153805.1ContigJAJKJP000000000SAMN10827378
b77_HoplandSoilSeptJan
GCA_021154635.1ContigJAJKIE000000000SAMN10827336
b6_HoplandSoilSeptJan
GCA_021154105.1ContigJAJKJC000000000SAMN10827363
b21_HoplandSoilSeptJan
GCA_021154165.1ContigJAJKJB000000000SAMN10827362
b20_HoplandSoilSeptJan
GCA_021153945.1ContigJAJKJL000000000SAMN10827374
b68_HoplandSoilSeptJan
GCA_021154705.1ContigJAJKIA000000000SAMN10827331
b46_HoplandSoilSeptJan
GCA_021154065.1ContigJAJKJG000000000SAMN10827368
b42_HoplandSoilSeptJan
GCA_021154615.1ContigJAJKID000000000SAMN10827335
b56_HoplandSoilSeptJan
GCA_021154555.1ContigJAJKII000000000SAMN10827343
b39_HoplandSoilSeptJan
GCA_021154745.1ContigJAJKIB000000000SAMN10827332
b49_HoplandSoilSeptJan
GCA_021154465.1ContigJAJKIN000000000SAMN10827348
b75_HoplandSoilSeptJan
GCA_021154435.1ContigJAJKIO000000000SAMN10827349
b78_HoplandSoilSeptJan
GCA_021154515.1ContigJAJKIL000000000SAMN10827346
b58_HoplandSoilSeptJan
GCA_021154785.1ContigJAJKHX000000000SAMN10827328
b3_HoplandSoilSeptJan
GCA_021153465.1ContigJAJKKA000000000SAMN10827389
b88_HoplandSoilSeptJan
GCA_021154015.1ContigJAJKJJ000000000SAMN10827371
b55_HoplandSoilSeptJan
GCA_021153475.1ContigJAJKJZ000000000SAMN10827388
b84_HoplandSoilSeptJan
GCA_021153455.1ContigJAJKKB000000000SAMN10827390
b90_HoplandSoilSeptJan
GCA_021154265.1ContigJAJKIW000000000SAMN10827357
b22_HoplandSoilSeptJan
GCA_021153985.1ContigJAJKJM000000000SAMN10827375
b69_HoplandSoilSeptJan
GCA_021153565.1ContigJAJKJU000000000SAMN10827383
b91_HoplandSoilSeptJan
GCA_021154005.1ContigJAJKJH000000000SAMN10827369
b52_HoplandSoilSeptJan
GCA_021154225.1ContigJAJKIY000000000SAMN10827359
b0_HoplandSoilSeptJan
GCA_021154045.1ContigJAJKJI000000000SAMN10827370
b53_HoplandSoilSeptJan
GCA_021153965.1ContigJAJKJK000000000SAMN10827373
b66_HoplandSoilSeptJan
GCA_021154095.1ContigJAJKJF000000000SAMN10827367
b36_HoplandSoilSeptJan
GCA_021154145.1ContigJAJKJD000000000SAMN10827365
b29_HoplandSoilSeptJan
GCA_021154405.1ContigJAJKIP000000000SAMN10827350
b85_HoplandSoilSeptJan
GCA_021154855.1ContigJAJKHV000000000SAMN10827325
b13_HoplandSoilSeptJan
GCA_021153655.1ContigJAJKJW000000000SAMN10827385
b95_HoplandSoilSeptJan
GCA_021153605.1ContigJAJKJT000000000SAMN10827382
b86_HoplandSoilSeptJan
GCA_021154085.1ContigJAJKJE000000000SAMN10827366
b34_HoplandSoilSeptJan
GCA_021154725.1ContigJAJKHZ000000000SAMN10827330
b38_HoplandSoilSeptJan
GCA_021154885.1ContigJAJKHS000000000SAMN10827321
b48_HoplandSoilSeptJan
SRA Data Details
ParameterValue
Data volume, Gbases753
Data volume, Tbytes0.49

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    Soil Metagenomes from Mediterranean grasslands of California
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