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Accession: PRJNA517942 ID: 517942

Mannheimia haemolytica

Mannheimia haemolytica whole genome phylogeny

See Genome Information for Mannheimia haemolytica
Isolates collected from nasopharyngeal swabs from stocker cattle in central Georgia, USA.
AccessionPRJNA517942
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismMannheimia haemolytica[Taxonomy ID: 75985]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia; Mannheimia haemolytica
PublicationsSnyder ER et al., "Genetic characterization of susceptible and multi-drug resistant Mannheimia haemolytica isolated from high-risk stocker calves prior to and after antimicrobial metaphylaxis.", Vet Microbiol, 2019 Aug;235:110-117
SubmissionRegistration date: 15-Jul-2019
Food Animal Health and Mangement Program, University of Georgia
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)6463
WGS master48
SRA Experiments48
Protein Sequences120618
Publications
PubMed1
Other datasets
BioSample48
Assembly48
Assembly details:
Assembly levelNumber of Assemblies
45
3
48
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_007002945.1ScaffoldVAJI00000000SAMN10848022
UGA-R7-163-1
GCA_007002885.1ScaffoldVAJJ00000000SAMN10848023
UGA-R7-167-1
GCA_007002905.1ScaffoldVAJK00000000SAMN10848024
UGA-R7-170-1
GCA_007003885.1ScaffoldVAHQ00000000SAMN10847978
UGA-A3-56-1
GCA_007003875.1ContigVAHP00000000SAMN10847977
UGA-A1-20-1
GCA_007003855.1ScaffoldVAHR00000000SAMN10847979
UGA-A3-57-1
GCA_007003815.1ScaffoldVAHS00000000SAMN10847980
UGA-A4-71-1
GCA_007003825.1ScaffoldVAHT00000000SAMN10847981
UGA-A4-85-1
GCA_007003785.1ScaffoldVAHV00000000SAMN10847983
UGA-A5-102-2
GCA_007003765.1ScaffoldVAHU00000000SAMN10847982
UGA-A4-87-1
GCA_007003775.1ScaffoldVAHW00000000SAMN10847984
UGA-A5-102-3
GCA_007003735.1ScaffoldVAHY00000000SAMN10847986
UGA-A5-104-3
GCA_007003725.1ContigVAHX00000000SAMN10847985
UGA-A5-104-2
GCA_007003685.1ScaffoldVAHZ00000000SAMN10847987
UGA-A5-124-1
GCA_007003675.1ContigVAIA00000000SAMN10847988
UGA-A5-126-1
GCA_007003655.1ScaffoldVAIB00000000SAMN10847989
UGA-A5-128-1
GCA_007003615.1ScaffoldVAID00000000SAMN10847991
UGA-A6-134-2
GCA_007003635.1ScaffoldVAIC00000000SAMN10847990
UGA-A6-134-1
GCA_007003585.1ScaffoldVAIE00000000SAMN10847992
UGA-A6-141-1
GCA_007003565.1ScaffoldVAIF00000000SAMN10847993
UGA-A6-141-3
GCA_007003545.1ScaffoldVAIJ00000000SAMN10847997
UGA-A6-159-3
GCA_007003505.1ScaffoldVAIH00000000SAMN10847995
UGA-A6-146-1
GCA_007003535.1ScaffoldVAIG00000000SAMN10847994
UGA-A6-143-1
GCA_007003495.1ScaffoldVAII00000000SAMN10847996
UGA-A6-159-1
GCA_007003485.1ScaffoldVAIK00000000SAMN10847998
UGA-A6-160-1
GCA_007003405.1ScaffoldVAIN00000000SAMN10848001
UGA-A7-167-2
GCA_007003415.1ScaffoldVAIO00000000SAMN10848002
UGA-A7-170-1
GCA_007003395.1ScaffoldVAIM00000000SAMN10848000
UGA-A7-167-1
GCA_007003425.1ScaffoldVAIL00000000SAMN10847999
UGA-A7-163-2
GCA_007003385.1ScaffoldVAIP00000000SAMN10848003
UGA-R1- 20-1
GCA_007003335.1ScaffoldVAIQ00000000SAMN10848004
UGA-R3-56-1
GCA_007003325.1ScaffoldVAIR00000000SAMN10848005
UGA-R3-57-1
GCA_007003305.1ScaffoldVAIT00000000SAMN10848007
UGA-R3-57-3
GCA_007003315.1ScaffoldVAIS00000000SAMN10848006
UGA-R3-57-2
GCA_007003285.1ScaffoldVAIU00000000SAMN10848008
UGA-R4-71-1
GCA_007003255.1ScaffoldVAIV00000000SAMN10848009
UGA-R4-85-1
GCA_007003235.1ScaffoldVAIW00000000SAMN10848010
UGA-R4-87-2
GCA_007003215.1ScaffoldVAIX00000000SAMN10848011
UGA-R5-102-1
GCA_007003195.1ScaffoldVAIY00000000SAMN10848012
UGA-R5-104-1
GCA_007003165.1ScaffoldVAJB00000000SAMN10848015
UGA-R5-128-1
GCA_007003155.1ScaffoldVAIZ00000000SAMN10848013
UGA-R5-124-1
GCA_007003125.1ScaffoldVAJA00000000SAMN10848014
UGA-R5-126-1
GCA_007003115.1ScaffoldVAJC00000000SAMN10848016
UGA-R6-134-1
GCA_007003105.1ScaffoldVAJD00000000SAMN10848017
UGA-R6-141-1
GCA_007003075.1ScaffoldVAJE00000000SAMN10848018
UGA-R6-143-1
GCA_007003065.1ScaffoldVAJF00000000SAMN10848019
UGA-R6-146-1
GCA_007003005.1ScaffoldVAJG00000000SAMN10848020
UGA-R6-159-1
GCA_007003015.1ScaffoldVAJH00000000SAMN10848021
UGA-R6-160-1
SRA Data Details
ParameterValue
Data volume, Gbases53
Data volume, Mbytes22204

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