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Accession: PRJNA521484 ID: 521484

Agrobacterium

Differential efficiency of rhizogenic strains for rol gene transformation of plants

sequencing of rhizogenic strains for phylogenomic classification and rol gene identification

Accession	PRJNA521484
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Agrobacterium[Taxonomy ID: 357] Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium
Publications	Desmet S et al., "Differential efficiency of wild type rhizogenic strains for rol gene transformation of plants.", Appl Microbiol Biotechnol, 2019 Aug;103(16):6657-6672
Submission	Registration date: 9-Jul-2019 Institute for Agricultural and Fisheries and Food Research (ILVO)
Related Resources	ILVO
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	656
WGS master	12
SRA Experiments	12
Protein Sequences	69553
Publications
PubMed	1
Other datasets
BioSample	12
Assembly	12

Assembly details:

Assembly level

Number of Assemblies

Contig

12
12

Assembly	Level	WGS	BioSample	Strain	Taxonomy
GCA_007002855.1		SGOH00000000	SAMN10888981	Arqua	Agrobacterium fabrum
GCA_007002765.1		SGNZ00000000	SAMN10888989	GBBC3283	Agrobacterium salinitolerans
GCA_007002865.1		SGOE00000000	SAMN10888984	MAFF210266	Agrobacterium tumefaciens
GCA_007002845.1		SGOD00000000	SAMN10888985	MAFF301724	Agrobacterium tumefaciens
GCA_007002955.1		SGOF00000000	SAMN10888983	LMG152	Rhizobium rhizogenes
GCA_007002745.1		SGNY00000000	SAMN10888990	GBBC3284	Rhizobium rhizogenes
GCA_007002775.1		SGOB00000000	SAMN10888987	B 4.1	Rhizobium rhizogenes
GCA_007002795.1		SGOA00000000	SAMN10888988	LMG63	Rhizobium rhizogenes
GCA_007002785.1		SGOC00000000	SAMN10888986	A 1.2.5	Rhizobium rhizogenes
GCA_007002995.1		SGOI00000000	SAMN10888980	LMG149	Rhizobium rhizogenes
GCA_007002985.1		SGOG00000000	SAMN10888982	LMG150	Rhizobium rhizogenes
GCA_006802085.1		VCBD00000000	SAMN11783991	ATCC 15834	Rhizobium rhizogenes

SRA Data Details

Parameter	Value
Data volume, Gbases	20
Data volume, Mbytes	8157

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WGS master
Link to WGS master record(s)

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