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Accession: PRJNA526698 ID: 526698

Rhinolophus ferrumequinum (greater horseshoe bat) genome assembly, mRhiFer1

See Genome Information for Rhinolophus ferrumequinum
The greater horseshoe bat, like some other bat species, are much longer lived like humans relative to their body size, and is being used as species to study the genetics of longevity. It native distribution covers Europe, North Africa, Central Asia and Eastern Asia. This reference assembly of has been produced as part of the G10K-VGP Project and Bat 1K Project. The sample was collected by Gareth Jones, and processed for genome sequencing by Sylke Winkler in Gene Myers' group at the Max Plank Institute of Molecular Cell Biology and Genetics (MPI-CBG) and by Olivier Fedrigo's group at the Rockefeller University Vertebrate Genome lab. The genome assembly was conducted by the G10K-VGP group, by Gene Myers and Martin Pippel at MPI-CBG and Arang Rhie and Sergey Koren of Adam Phillippy's lab at NIH. More...
AccessionPRJNA526698
TypeUmbrella project
OrganismRhinolophus ferrumequinum[Taxonomy ID: 59479]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Rhinolophoidea; Rhinolophidae; Rhinolophinae; Rhinolophus; Rhinolophus ferrumequinum
Publications (total 3)
  • Formenti G et al., "Complete vertebrate mitogenomes reveal widespread repeats and gene duplications.", Genome Biol, 2021 Apr 29;22(1):120
More...
SubmissionRegistration date: 12-Mar-2019
Vertebrate Genomes Project
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)53591
WGS master3
Transcript53353
SRA Experiments6
Protein Sequences90236
Publications
PubMed5
PMC4
Other datasets
BioSample3
Assembly3
SRA Data Details
ParameterValue
Data volume, Gbases383
Data volume, Tbytes0.14
This project encompasses the following 4 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
Scaffolds
Total

2
2
4
BioProject
accession
Assembly
level
OrganismTitle
PRJNA489106 ChromosomesRhinolophus ferrumequinumRhinolophus ferrumequinum (Greater horseshoe bat) genome sequencing and assembly, primary haplotype, v1 (Vertebrate Genomes Project)
PRJNA489105 ScaffoldsRhinolophus ferrumequinumRhinolophus ferrumequinum (Greater horseshoe bat) genome sequencing and assembly, alternate haplotype, v1 (Vertebrate Genomes Project)
PRJNA613604 ChromosomesRhinolophus ferrumequinumRhinolophus ferrumequinum isolate:MPI-CBG mRhiFer1 RefSeq Genome sequencing and assembly (NCBI)
PRJNA628581 ScaffoldsRhinolophus ferrumequinumRhinolophus ferrumequinum Genome sequencing, assembly and annotation (Bat1K)

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