Pelodiscus sinensis (ID 553435) - BioProject

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Accession: PRJDB8223 ID: 553435

Pelodiscus sinensis (Chinese soft-shelled turtle)

Multifaceted Hi-C benchmarking for chromosome-scale genome scaffolding

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30 additional projects are related by organism.

This study provides the first comparison of multiple sample preparation kits/protocols and computational programs for Hi-C scaffolding, by an academic third party. More...

Accession	PRJDB8223
Scope	Multispecies
Organism	Pelodiscus sinensis[Taxonomy ID: 13735] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus; Pelodiscus sinensis
Publications	Kadota M et al., "Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?", Gigascience, 2020 Jan 1;9(1)
Submission	Registration date: 19-Jun-2019 Laboratory for Phyloinformatics, Center for Biosystems Dynamics Research, RIKEN

Project Data:

Resource Name	Number of Links
Sequence data
SRA Experiments	23
Publications
PubMed	1
PMC	1
Other datasets
BioSample	2

SRA Data Details

Parameter	Value
Data volume, Gbases	655
Data volume, Tbytes	0.28

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Pelodiscus sinensis (Chinese soft-shelled turtle)

Multifaceted Hi-C benchmarking for chromosome-scale genome scaffolding

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