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Accession: PRJNA557691 ID: 557691

Astatotilapia calliptera (eastern happy)

Astatotilapia calliptera (Eastern happy) genome assembly, fAstCal1.2

See Genome Information for Astatotilapia calliptera
The Vertebrate Genomes Project at the Sanger Institute and the University of Cambridge, UK provides high quality reference genome assemblies for fish, caecilians and rodents as part of the Genome10K initiative. This project provides the genome assembly of the Lake Malawi cichlid Astatotilapia calliptera (Eastern Happy) as a reference for the investigation of adaptive radiation in African cichlids [PMID: 26680190]. The assembly fAstCal1.2 is based on ~75x PacBio RSII data, ~100x Illumina HiSeqX data generated from a 10X Genomics Chromium library and single-enzyme BioNano Irys data. An initial PacBio assembly was made using Falcon-unzip and the primary contigs extended by merging with a miniasm assembly. The contigs were then scaffolded using the 10X data with scaff10x. More...
AccessionPRJNA557691
TypeUmbrella project
OrganismAstatotilapia calliptera[Taxonomy ID: 8154]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia; Astatotilapia calliptera
SubmissionRegistration date: 31-Jul-2019
SC
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)58135
WGS master1
Genomic DNA1
Transcript57615
Protein Sequences52705
Publications
PubMed3
PMC3
Other datasets
BioSample1
Assembly1
Astatotilapia calliptera encompasses the following 2 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
No data links
Total

1
1
2
BioProject
accession
Assembly
level
OrganismTitle
PRJEB24325 ChromosomesAstatotilapia callipteraAstatotilapia calliptera (eastern happy) genome assembly, fAstCal1 (Wellcome Sanger Institute)
PRJNA488811 No data linksAstatotilapia callipteraAstatotilapia calliptera RefSeq Genome (NCBI)

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    Astatotilapia calliptera
    Astatotilapia calliptera (Eastern happy) genome assembly, fAstCal1.2
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