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Accession: PRJNA561470 ID: 561470

Bacteria

Pig intestinal bacterial collection (PIBAC)

Many gut bacteria are still unknown, which hampers full understanding of microbe-host interactions and microbiome-based applications. More...
AccessionPRJNA561470
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsLooft T et al., "Complete Genome Sequence of Coriobacteriaceae Strain 68-1-3, a Novel Mucus-Degrading Isolate from the Swine Intestinal Tract.", Genome Announc, 2015 Oct 8;3(5)
SubmissionRegistration date: 22-Nov-2019
UniKlinik RWTH Aachen
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)114
WGS master110
Genomic DNA4
SRA Experiments63
Protein Sequences4516
Publications
PubMed1
PMC1
Other datasets
BioSample182
Assembly114
Assembly details:
Assembly levelNumber of Assemblies
4
110
114
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_009696675.1ContigVULN00000000
SAMN12619111
WCA-389-WT-5B
GCA_012844205.1ContigJABAGP000000000
SAMN14558239
BL-389-WT-23F
GCA_009697165.1ContigVULP00000000
SAMN12619113
BSM-383-APC-4H
GCA_009696575.1ContigVULQ00000000
SAMN12619114
WCA-380-WT-2B
GCA_009696605.1ContigVULR00000000
SAMN12619115
Med78-601-WT-4W-RMD-3
GCA_009695585.1ContigVUNR00000000
SAMN12619172
WCA-693-APC-5D-A
GCA_012844185.1ContigJABAGO000000000
SAMN14558240
WB01_D5_05
GCA_009696625.1ContigVULS00000000
SAMN12619116
BL-252-APC-1A (aerob)
GCA_012844145.1ContigJABAGM000000000
SAMN14558242
MRS-251-APC-3A
GCA_012844135.1ContigJABAGN000000000
SAMN14558241
WCA-380-WT-2A1
GCA_012844125.1ContigJABAGL000000000
SAMN14558243
WCA3-601-WT-5E
GCA_012844105.1ContigJABAGK000000000
SAMN14558244
COR2-248-WT-1
GCA_009695865.1ContigVUNB00000000
SAMN12619154
RF-744-FAT-WT-3
GCA_000814825.1Complete genomeSAMN02951405
68-1-3
GCA_012844085.1ContigJABAGJ000000000
SAMN14558245
WCA-130-P53-4B
GCA_009696495.1ContigVULV00000000
SAMN12619119
WCA-178-WT-4B
GCA_012844045.1ContigJABAGI000000000
SAMN14558246
BSM-130-P53-3C
GCA_009696505.1ContigVULW00000000
SAMN12619120
BSM-380-WT-2B
GCA_009696005.1ContigVUMV00000000
SAMN12619148
Oil+RF-744-WCA-WT-13
GCA_009695635.1ContigVUNN00000000
SAMN12619168
NM-380-WT-3C1
GCA_012844025.1ContigJABAGH000000000
SAMN14558247
WB02_D5_03
GCA_012844265.1ContigJABAGT000000000
SAMN14558308
105753
GCA_001701045.1Complete genomeSAMN05441363
CL-84 (T)
GCA_012843965.1ContigJABAGD000000000
SAMN14558251
WB01_NA02
GCA_012844035.1ContigJABAGG000000000
SAMN14558248
BSM-178-APC-2A
GCA_012844005.1ContigJABAGF000000000
SAMN14558249
Med78_4-601-WT-1
GCA_012843975.1ContigJABAGE000000000
SAMN14558250
WCA-h-251-APC-2
GCA_009696375.1ContigVUMD00000000
SAMN12619127
WCA-389-WT-23D1
GCA_012843905.1ContigJABAGC000000000
SAMN14558252
SM-530-WT-3G
GCA_009696365.1ContigVUMC00000000
SAMN12619126
WB02_MRS01
GCA_009696325.1ContigVUME00000000
SAMN12619128
WCA1-178-WT-3 (M1)
GCA_009696305.1ContigVUMF00000000
SAMN12619129
WCA1-178-WT-3 (M2)
GCA_012843925.1ContigJABAGB000000000
SAMN14558253
BL-383-APC-2C
GCA_012843865.1ContigJABAFZ000000000
SAMN14558255
BL-383-APC-3D
GCA_012843915.1ContigJABAGA000000000
SAMN14558254
BL-383-APC-2I
GCA_009696315.1ContigVUMG00000000
SAMN12619131
WCA-380-WT-3A
GCA_012843875.1ContigJABAFY000000000
SAMN14558256
PG-251-APC-1
GCA_009696265.1ContigVUMH00000000
SAMN12619132
PG-178-WT-4
GCA_012843825.1ContigJABAFX000000000
SAMN14558257
BSM-383-APC-5F
GCA_009696275.1ContigVUMI00000000
SAMN12619133
WCA-389-WT-23B
GCA_012843805.1ContigJABAFW000000000
SAMN14558258
WB01_D5_07
GCA_009696245.1ContigVUMJ00000000
SAMN12619134
McC-252-APC-1B1 (aerob)
GCA_012843815.1ContigJABAFV000000000
SAMN14558259
WCA-380-WT-3C
GCA_012843765.1ContigJABAFU000000000
SAMN14558260
BL-380-WT-3A
GCA_012843725.1ContigJABAFS000000000
SAMN14558262
BL-249-WT-6
GCA_012843775.1ContigJABAFT000000000
SAMN14558261
WCA-386-APC-3D
GCA_012844275.1ContigJABAGS000000000
SAMN14558309
105332
GCA_009696185.1ContigVUMK00000000
SAMN12619136
BSM-130-P53-22D
GCA_009696205.1ContigVUML00000000
SAMN12619137
WCA-130-P53-23F
GCA_009696115.1ContigVUMP00000000
SAMN12619141
BL-380-WT-2B
GCA_012843735.1ContigJABAFR000000000
SAMN14558263
BSM-383-APC-22F
GCA_009696175.1ContigVUMM00000000
SAMN12619138
LKV-178-WT-2G
GCA_009696105.1ContigVUMQ00000000
SAMN12619142
FSA-380-WT-2B
GCA_012843705.1ContigJABAFQ000000000
SAMN14558264
FSA-380-WT-3A
GCA_009695775.1ContigVUNG00000000
SAMN12619161
LKV-178-WT-2A
GCA_009696075.1ContigVUMR00000000
SAMN12619143
LKV-472-APC-3
GCA_009695915.1ContigVUMZ00000000
SAMN12619152
WCA-MUC-591-APC-3H
GCA_009696465.1ContigVULX00000000
SAMN12619121
WCA-383-APC-5B
GCA_012843555.1ContigJABAFJ000000000
SAMN14558271
Bifido-178-WT-3C
GCA_012843585.1ContigJABAFK000000000
SAMN14558270
WCA-383-APC-5E
GCA_009695965.1ContigVUMW00000000
SAMN12619149
WCA-470BD-2E
GCA_012843525.1ContigJABAFI000000000
SAMN14558272
WCA-380-WT-3D
GCA_009695985.1ContigVUMX00000000
SAMN12619150
Bifido-178-WT-2B
GCA_012843675.1ContigJABAFO000000000
SAMN14558266
MRS-253-APC-2B
GCA_012843665.1ContigJABAFP000000000
SAMN14558265
WCA-389-WT-5H1
GCA_012843605.1ContigJABAFM000000000
SAMN14558268
LKV-472-APC-10
GCA_012843615.1ContigJABAFL000000000
SAMN14558269
WCA-389-WT-5E
GCA_012843635.1ContigJABAFN000000000
SAMN14558267
WCA-386-APC-4I
GCA_012928525.1ContigJABBJH000000000
SAMN14604114
WCA-386-APC-2A
GCA_012843515.1ContigJABAFH000000000
SAMN14558273
PG-130-P53-9
GCA_012843505.1ContigJABAFG000000000
SAMN14558274
Oil-RF-744-FAT-WT-6-1
GCA_022134585.1ContigJAKNCT000000000
SAMN25619963
oilRF-744-wt-GAM-9
GCA_012843475.1ContigJABAFF000000000
SAMN14558275
MRS-249-WT-4A
GCA_009695935.1ContigVUMY00000000
SAMN12619151
RF-GAM-744-WT-7
GCA_009695905.1ContigVUNA00000000
SAMN12619153
WCA-MUC-591-APC-4B
GCA_009696065.1ContigVUMS00000000
SAMN12619145
BSM-380-WT-5A
GCA_009695875.1ContigVUNC00000000
SAMN12619156
CA-Schmier-601-WT-1
GCA_012843465.1ContigJABAFE000000000
SAMN14558276
WCA3-693-APC-2H
GCA_012843415.1ContigJABAFD000000000
SAMN14558277
Med78_4-601-WT-2
GCA_009695845.1ContigVUND00000000
SAMN12619157
WB01_CNA04
GCA_012844235.1ContigJABAGR000000000
SAMN14558310
105184
GCA_009695815.1ContigVUNE00000000
SAMN12619159
WCA-SAB-591-4A-A
GCA_009696545.1ContigVULU00000000
SAMN12619118
WCA-389-WT-3C
GCA_009696445.1ContigVULZ00000000
SAMN12619123
Oil+RF-744-WCA-WT-11
GCA_009696145.1ContigVUMO00000000
SAMN12619140
RF-744-FAT-4
GCA_012843435.1ContigJABAFC000000000
SAMN14558278
BL-248-WT-3
GCA_009695745.1ContigVUNH00000000
SAMN12619162
SM-530-WT-4B
GCA_012844225.1ContigJABAGQ000000000
SAMN14558311
105337
GCA_012843405.1ContigJABAFB000000000
SAMN14558279
BL-253-APC-6A1W
GCA_009695765.1ContigVUNI00000000
SAMN12619163
MUC/MUC-530-WT-4D
GCA_009695715.1ContigVUNJ00000000
SAMN12619164
WCA3-601-WT-6J
GCA_009695705.1ContigVUNK00000000
SAMN12619165
BSM-389-WT-23D
GCA_009696615.1ContigVULO00000000
SAMN12619112
WB03_NA08
GCA_009695805.1ContigVUNF00000000
SAMN12619160
LKV-178-WT-2C
GCA_012843375.1ContigJABAFA000000000
SAMN14558280
PG-130-P53-12
GCA_009697385.1ContigVUNL00000000
SAMN12619166
WCA-380-WT-3B3
GCA_009695655.1ContigVUNM00000000
SAMN12619167
CA-Schmier-601-WT-3
GCA_009696565.1ContigVULT00000000
SAMN12619117
Oil-RF-744-WCA-WT-10
GCA_009676955.1Complete genomeSAMN13152233
Oil-RF-744-WCA-WT-10
GCA_012843325.1ContigJABAEY000000000
SAMN14558282
McC-251-APC-2A
GCA_012843365.1ContigJABAEZ000000000
SAMN14558281
MRS-249-WT-4B
GCA_009695665.1ContigVUNO00000000
SAMN12619169
McC-251-APC-3A2 (aerob)
GCA_009696165.1ContigVUMN00000000
SAMN12619139
Oil+RF-744-GAM-WT-6
GCA_009695625.1ContigVUNP00000000
SAMN12619170
BL-178-WT-3A
GCA_012843315.1ContigJABAEX000000000
SAMN14558283
WB01_FAA12
GCA_009696485.1ContigVULY00000000
SAMN12619122
68-1-5
GCA_009695605.1ContigVUNQ00000000
SAMN12619171
WCA3-693-APC-4
GCA_009696045.1ContigVUMT00000000
SAMN12619146
WCA-693-APC-MOT-I
GCA_009695545.1ContigVUNS00000000
SAMN12619173
BBE-744-WT-12
GCA_012843305.1ContigJABAEW000000000
SAMN14558284
COR2-253-APC-1A
GCA_009695995.1ContigVUMU00000000
SAMN12619147
WCA3-601-WT-6H
GCA_009696405.1ContigVUMA00000000
SAMN12619124
BSM-380-WT-2D
GCA_009696415.1ContigVUMB00000000
SAMN12619125
BL-389-WT-3D
GCA_009684695.1Complete genomeSAMN13152203
BL389WT3D
SRA Data Details
ParameterValue
Data volume, Gbases9
Data volume, Mbytes5161

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