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Accession: PRJNA561800 ID: 561800

Zalophus californianus (California sea lion) genome assembly, mZalCal1

See Genome Information for Zalophus californianus
As an apex marine predator, the California sea lion is an important indicator species for the impact of anthropogenic pollution on ocean health. This assembly has been produced as part of the G10K-VGP Project, and supported by Jochen Wolf, Professor of Evolutionary Biology, LMU Munich, Germany. DNA was collected from from a juvenile male at the Marine Mammal Center in Sausalito, California. The sample was sequenced using the VGP 1.6 individual pipeline at the Rockefeller University Vertebrate Genome Lab, led by Olivier Fedrigo and Erich Jarvis. Manual curation of chromosomes and other genomic features was conducted by the gEVAL group led by Kerstin Howe at the Sanger Institute. The primary haplotype contains the longest contigs of the Pacbio FALCON unzip assembly, scaffolded with 10X linked reads, Bionano optical maps, and Arima HiC reads, with multiple tools to further separate out haplotypes. More...
AccessionPRJNA561800
TypeUmbrella project
OrganismZalophus californianus[Taxonomy ID: 9704]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus; Zalophus californianus
SubmissionRegistration date: 23-Aug-2019
Vertebrate Genomes Project
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)70875
WGS master2
Transcript70788
SRA Experiments9
Protein Sequences61011
Publications
PubMed2
PMC1
Other datasets
BioSample1
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases657
Data volume, Tbytes0.22
This project encompasses the following 4 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
Contigs
SRA or Trace
Total

2
1
1
4
BioProject
accession
Assembly
level
NameTitle
PRJNA559673 ChromosomesZalophus californianusZalophus californianus (California sea lion) genome, mZalCal1, primary haplotype (Vertebrate Genomes Project)
PRJNA559674 ContigsZalophus californianusZalophus californianus (California sea lion) genome, mZalCal1, alternate haplotype (Vertebrate Genomes Project)
PRJNA602522 ChromosomesZalophus californianusZalophus californianus isolate:mZalCal1 RefSeq Genome sequencing and assembly (NCBI)
PRJNA1008629 SRA or TraceZalophus californianus (California sea lion) genome, mZalCal1, sequence dataZalophus californianus (California sea lion) genome, mZalCal1, sequence data (G10K)

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