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Genome Information for Acanthisitta chloris
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The Rifleman (Acanthisitta chloris) is an endemic bird to New Zealand and is also known as New Zealand wrens, or Titipounamu in Maori. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with Pacific long reads, Bionano optical maps, and 10X Genomics libraries at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by the Olivier Fedrigo, and supervised by Arang Rhie, using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Funding was raised by Tom Gilbert and Erich Jarvis from B10K contributors and HHMI. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562166 |
| Type | Umbrella project |
| Organism | Acanthisitta chloris[Taxonomy ID: 57068] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Acanthisittidae; Acanthisitta; Acanthisitta chloris |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 41 |
| WGS master | 2 |
| SRA Experiments | 17 |
| Other datasets |
| BioSample | 2 |
| Assembly | 2 |
This project encompasses the following 2 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds Total |
1
1
2
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJNA561954 | Chromosomes | Acanthisitta chloris | Acanthisitta chloris (Rifleman) genome, bAcaChl1, primary haplotype (Vertebrate Genomes Project) | | PRJNA561955 | Scaffolds | Acanthisitta chloris | Acanthisitta chloris (Rifleman) genome, bAcaChl1, alternate haplotype (Vertebrate Genomes Project) |
|