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Accession: PRJNA562178 ID: 562178

Arvicanthis niloticus (Nile rat) genome, mArvNil1

See Genome Information for Arvicanthis niloticus
Arvicanthis Niloticus, commonly known as the Nile rat or African grass rat, is a valuable model organism used in various areas of research including behavioral neuroscience, nutrition science, ophthalmology and evolutionary biology. Native to Northern Africa, this diurnal rodent has a diet primarily of leaves and stems, supplemented with insects, seeds, and fruits. However, when maintained in a laboratory environment with a rodent chow diet that has high caloric content relative to its native diet, both sexes rapidly develop diet-induced diabetes. By mimicking the disease etiology, the Nile rat provides an important animal model to study the causality of type 2 diabetes and is a suitable pre-clinical model. These samples were collected from a male and his parents in a laboratory colony of Huishi Toh and James Thomson at University of California, Santa Barbara, and used to generate chromosomal level reference assembly as part of the G10K-VGP project.
AccessionPRJNA562178
TypeUmbrella project
OrganismArvicanthis niloticus[Taxonomy ID: 61156]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Arvicanthis; Arvicanthis niloticus
SubmissionRegistration date: 26-Aug-2019
Vertebrate Genomes Project
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)47606
WGS master3
Transcript45963
SRA Experiments28
Protein Sequences41473
Publications
PubMed1
PMC1
Other datasets
BioSample1
Assembly3
SRA Data Details
ParameterValue
Data volume, Gbases701
Data volume, Tbytes0.24
This project encompasses the following 5 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
Scaffolds
SRA or Trace
Total

2
2
1
5
BioProject
accession
Assembly
level
NameTitle
PRJNA561935 ScaffoldsArvicanthis niloticusArvicanthis niloticus (Nile rat) genome, mArvNil1, paternal haplotype (Vertebrate Genomes Project)
PRJNA561936 ScaffoldsArvicanthis niloticusArvicanthis niloticus (Nile rat) genome, mArvNil1, maternal haplotype (Vertebrate Genomes Project)
PRJNA608735 ChromosomesArvicanthis niloticusArvicanthis niloticus (Nile rat) genome, mArvNil1, paternal haplotype with X (Vertebrate Genomes Project)
PRJNA632612 ChromosomesArvicanthis niloticusArvicanthis niloticus isolate:mArvNil1 RefSeq Genome sequencing and assembly (NCBI)
PRJNA1008597 SRA or TraceArvicanthis niloticus (Nile rat) genome, mArvNil1, sequence dataArvicanthis niloticus (Nile rat) genome, mArvNil1, sequence data (G10K)

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