U.S. flag

An official website of the United States government

Display Settings:

Format

Send to:

Choose Destination
Accession: PRJNA562227 ID: 562227

Nyctibius grandis (Great Potoo) genome, bNycGra1

See Genome Information for Nyctibius grandis
The Great Potoo (Nyctibius grandis) is the largest bird of the Caprimulgiformes order, inhabit tropical America from Mexico to Southern Brazil, and is nocturnal. This assembly has been produced as part of the G10K-VGP and B10K projects. Sequencing was conducted with PacBio long reads, Bionano optical maps, and 10X Genomics linked reads at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by Tomas Carrasco and Marcela Uliano-Silva, and supervised by Arang Rhie, using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Genome coordination and funding was by Erich Jarvis and Tom Gilbert. More...
AccessionPRJNA562227
TypeUmbrella project
OrganismNyctibius grandis[Taxonomy ID: 48427]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Caprimulgiformes; Nyctibiidae; Nyctibius; Nyctibius grandis
SubmissionRegistration date: 26-Aug-2019
Vertebrate Genomes Project
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)33384
WGS master2
Transcript33115
SRA Experiments15
Protein Sequences30447
Other datasets
BioSample1
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases329
Data volume, Tbytes0.11
This project encompasses the following 4 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
Scaffolds
SRA or Trace
Total

2
1
1
4
BioProject
accession
Assembly
level
NameTitle
PRJNA562020 ChromosomesNyctibius grandisNyctibius grandis (Great Potoo) genome, bNycGra1, primary haplotype (Vertebrate Genomes Project)
PRJNA562021 ScaffoldsNyctibius grandisNyctibius grandis (Great Potoo) genome, bNycGra1, alternate haplotype (Vertebrate Genomes Project)
PRJNA1158839 ChromosomesNyctibius grandisNyctibius grandis isolate:bNycGra1 RefSeq Genome sequencing and assembly (NCBI)
PRJNA1007613 SRA or TraceNyctibius grandis (Great Potoo) genome, bNycGra1, sequence data.Nyctibius grandis (Great Potoo) genome, bNycGra1, sequence data. (G10K)

Supplemental Content

Recent activity

    Your browsing activity is empty.

    Activity recording is turned off.

    Turn recording back on

    See more...
    Support Center