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Genome Information for Periophthalmus magnuspinnatus
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The Korean giant-fin mudskipper (Periophthalmodon schlosseri) is one of the largest of mudskippers known. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with PacBio long reads, Bionano optical maps, and 10X Genomics libraries at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by the Chul Lee and Marcela Uliano-Silva, and supervised by Arang Rhie, using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Genome coordination and funding was by Chul Lee and Heebal Kim. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562229 |
| Type | Umbrella project |
| Organism | Periophthalmus magnuspinnatus[Taxonomy ID: 409849] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Periophthalmus; Periophthalmus magnuspinnatus |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 33409 |
| WGS master | 2 |
| Transcript | 33236 |
| SRA Experiments | 12 |
| Protein Sequences | 31906 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA561998 | Chromosomes | Periophthalmus magnuspinnatus | Periophthalmus magnuspinnatus (Korean giant-fin mudskipper) genome, fPerMag1, primary haplotype (Vertebrate Genomes Project) | | PRJNA561999 | Scaffolds | Periophthalmus magnuspinnatus | Periophthalmus magnuspinnatus (Korean giant-fin mudskipper) genome, fPerMag1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA627707 | Chromosomes | Periophthalmus magnuspinnatus | Periophthalmus magnuspinnatus isolate:fPerMag1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1008552 | SRA or Trace | Periophthalmus magnuspinnatus (Korean giant-fin mudskipper) genome, fPerMag1, sequence data. | Periophthalmus magnuspinnatus (Korean giant-fin mudskipper) genome, fPerMag1, sequence data. (G10K) |
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