See
Genome Information for Petromyzon marinus
Navigate Up
Navigate Across
The sea lamprey (Petromyzon marinus) is a parasitic jawless fish native to the Northern Hemisphere, and important for evolutionary studies of vertebrates. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with PacBio long reads, Bionano optical maps, and 10X Genomics linked reads at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by Olivier Fedrigo, and supervised by Arang Rhie, using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Genome coordination and funding was by Jeremiah Smith and Andrew Muir. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562230 |
| Type | Umbrella project |
| Organism | Petromyzon marinus[Taxonomy ID: 7757] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon; Petromyzon marinus |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 42846 |
| WGS master | 2 |
| Transcript | 41241 |
| SRA Experiments | 16 |
| Protein Sequences | 37563 |
| Publications |
| PubMed | 4 |
| PMC | 3 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA562011 | Chromosomes | Petromyzon marinus | Petromyzon marinus (Sea Lamprey) genome, kPetMar1, primary haplotype (Vertebrate Genomes Project) | | PRJNA562012 | Scaffolds | Petromyzon marinus | Petromyzon marinus (Sea Lamprey) genome, kPetMar1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA611764 | Chromosomes | Petromyzon marinus | Petromyzon marinus isolate:kPetMar1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1008522 | SRA or Trace | Petromyzon marinus (Sea Lamprey) genome, kPetMar1, sequence data. | Petromyzon marinus (Sea Lamprey) genome, kPetMar1, sequence data. (G10K) |
|