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Accession: PRJNA562241 ID: 562241

Pterocles gutturalis (Yellow-throated sandgrouse) genome, bPteGut1

See Genome Information for Pterocles gutturalis
The Yellow-throated Sandgrouse (Pterocles gutturalis saturatior) is a member of the Pteroclididae family (ground dwelling birds restricted to treeless, open country) and can be found in many countries in southern and eastern Africa. This assembly has been produced as part of the G10K-VGP and B10K projects. Sequencing was conducted with Pacific long reads, Bionano optical maps, and 10X Genomics libraries at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by the Chul Lee, and supervised by Arang Rhie, using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Funding was raised by Tom Gilbert and Erich Jarvis from B10K contributors and HHMI. More...
AccessionPRJNA562241
TypeUmbrella project
OrganismPterocles gutturalis[Taxonomy ID: 240206]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Pterocliformes; Pteroclidae; Pterocles; Pterocles gutturalis
SubmissionRegistration date: 26-Aug-2019
Vertebrate Genomes Project
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)39
WGS master2
SRA Experiments10
Other datasets
BioSample1
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases156
Data volume, Mbytes47600
This project encompasses the following 3 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
Contigs
SRA or Trace
Total

1
1
1
3
BioProject
accession
Assembly
level
NameTitle
PRJNA561958 ChromosomesPterocles gutturalisPterocles gutturalis (Yellow-throated sandgrouse) genome, bPteGut1, primary haplotype (Vertebrate Genomes Project)
PRJNA561959 ContigsPterocles gutturalisPterocles gutturalis (Yellow-throated sandgrouse) genome, bPteGut1, alternate haplotype (Vertebrate Genomes Project)
PRJNA1005986 SRA or TracePterocles gutturalis (Yellow-throated sandgrouse), bPteGut1, sequence data.Pterocles gutturalis (Yellow-throated sandgrouse), bPteGut1, sequence data. (G10K)

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