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Genome Information for Xenentodon cancila
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The Needlefish (Xenentodon cancila) is a fresh water fish found in South and SouthEast Asia. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with Pacific long reads, Bionano optical maps, 10X Genomics libraries, Arima Genomics HiC, and Illumina short reads at the Max Planck Institute in Dresden led by Gene Myers group. Genome assembly was conducted by Martin Pippel, using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Funding was raised by Gene Myers and sample from Axel Meyer. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562250 |
| Type | Umbrella project |
| Organism | Xenentodon cancila[Taxonomy ID: 129108] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Belonidae; Xenentodon; Xenentodon cancila |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 27 |
| WGS master | 2 |
| SRA Experiments | 23 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
1
1
1
3
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA561973 | Chromosomes | Xenentodon cancila | Xenentodon cancila (Needlefish) genome, fXenCan1, primary haplotype (Vertebrate Genomes Project) | | PRJNA561974 | Scaffolds | Xenentodon cancila | Xenentodon cancila (Needlefish) genome, fXenCan1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA1008565 | SRA or Trace | Xenentodon cancila (Needlefish) genome, fXenCan1, sequence data. | Xenentodon cancila (Needlefish) genome, fXenCan1, sequence data. (G10K) |
|