ID 578828 - BioProject

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Accession: PRJNA578828 ID: 578828

The thoracic airway microbiota genome sequencing and assembly

Genomic analysis of a culture collection of bacteria isolated from airway samples of asthmatic and healthy individuals

Accession	PRJNA578828
Data Type	Genome sequencing
Scope	Multispecies
Publications	Cuthbertson L et al., "Genomic attributes of airway commensal bacteria and mucosa.", Commun Biol, 2024 Feb 12;7(1):171 Published online: Cuthbertson L et al., "Genomic attributes of airway commensal bacteria and mucosa", Communications Biology, 2024;7(1)
Submission	Registration date: 22-Oct-2019 Max-Delbrueck-Center for Molecular Medicine
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	126
Publications
PubMed	1
PMC	1
Other datasets
BioSample	397
Assembly	126

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

126
126

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_041433935.1	JAPWCK000000000	SAMN30825679	27098_8_156	Actinomyces naeslundii
GCA_041433905.1	JAPWCJ000000000	SAMN30825680	27098_8_157	Actinomyces oris
GCA_041433855.1	JAPWCH000000000	SAMN30825682	27098_8_120	Cupriavidus gilardii
GCA_041433845.1	JAPWCF000000000	SAMN30825684	20925_1_68	Cutibacterium acnes
GCA_041433865.1	JAPWCG000000000	SAMN30825683	20925_1_38	Cutibacterium acnes
GCA_041433815.1	JAPWCE000000000	SAMN30825685	27098_8_131	Fusobacterium periodonticum
GCA_041433775.1	JAPWCD000000000	SAMN30825686	27098_8_59	Fusobacterium sp. 27098_8_59
GCA_041433675.1	JAPWBX000000000	SAMN30825692	20925_1_65	Gemella sanguinis
GCA_041433655.1	JAPWBW000000000	SAMN30825693	20925_1_66	Gemella sanguinis
GCA_041433635.1	JAPWBV000000000	SAMN30825694	27098_8_105	Gemella sanguinis
GCA_041433595.1	JAPWBU000000000	SAMN30825695	27098_8_106	Gemella sanguinis
GCA_041433715.1	JAPWBY000000000	SAMN30825691	20925_1_41	Gemella sanguinis
GCA_041433735.1	JAPWCC000000000	SAMN30825687	20925_1_85	Gemella sp. 20925_1_85
GCA_041433745.1	JAPWCB000000000	SAMN30825688	27098_8_149	Gemella sp. 27098_8_149
GCA_041433725.1	JAPWCA000000000	SAMN30825689	27098_8_155	Gemella sp. 27098_8_155
GCA_041433685.1	JAPWBZ000000000	SAMN30825690	27098_8_92	Gemella sp. 27098_8_92
GCA_041433585.1	JAPWBT000000000	SAMN30825696	20925_1_19	Granulicatella adiacens
GCA_041433575.1	JAPWBS000000000	SAMN30825697	20925_1_28	Granulicatella sp. 20925_1_28
GCA_041433555.1	JAPWBR000000000	SAMN30825698	20925_1_45	Granulicatella sp. 20925_1_45
GCA_041433505.1	JAPWBQ000000000	SAMN30825699	27098_8_141	Haemophilus parahaemolyticus
GCA_041433485.1	JAPWBO000000000	SAMN30825701	27098_8_33	Haemophilus parainfluenzae
GCA_041433475.1	JAPWBN000000000	SAMN30825702	27098_8_118	Haemophilus paraphrohaemolyticus
GCA_041433495.1	JAPWBP000000000	SAMN30825700	27098_8_127	Haemophilus sp. 27098_8_127
GCA_041433455.1	JAPWBM000000000	SAMN30825703	20925_1_15	Haemophilus sputorum
GCA_041433365.1	JAPWBL000000000	SAMN30825704	27098_8_16	Leptotrichia wadei
GCA_041433375.1	JAPWBK000000000	SAMN30825705	27098_8_129	Microbacterium paraoxydans
GCA_041433355.1	JAPWBH000000000	SAMN30825708	20925_1_61	Micrococcus luteus
GCA_041433335.1	JAPWBG000000000	SAMN30825709	20925_1_89	Micrococcus luteus
GCA_041433405.1	JAPWBI000000000	SAMN30825707	20925_1_52	Micrococcus luteus
GCA_041433385.1	JAPWBJ000000000	SAMN30825706	20925_1_46	Micrococcus luteus
GCA_041433285.1	JAPWBE000000000	SAMN30825711	20925_1_94	Micrococcus luteus
GCA_041433275.1	JAPWBF000000000	SAMN30825710	20925_1_90	Micrococcus luteus
GCA_041433265.1	JAPWBD000000000	SAMN30825712	20925_1_23	Neisseria flavescens
GCA_041433205.1	JAPWCN000000000	SAMN30825716	27098_8_142	Neisseria perflava
GCA_041433255.1	JAPWBC000000000	SAMN30825713	20925_1_37	Neisseria sp. 20925_1_37
GCA_041433235.1	JAPWBB000000000	SAMN30825714	27098_8_112	Neisseria sp. 27098_8_112
GCA_041433195.1	JAPWBA000000000	SAMN30825715	27098_8_139	Neisseria sp. 27098_8_139
GCA_041433145.1	JAPWAZ000000000	SAMN30825717	27098_8_158	Neisseria sp. 27098_8_158
GCA_041433835.1	JAPWCI000000000	SAMN30825681	27098_8_36	Niallia circulans
GCA_041433955.1	JAPWCL000000000	SAMN30825678	20925_1_25	Pauljensenia sp. 20925_1_25
GCA_041432835.1	JAPWAH000000000	SAMN30825735	20925_1_27	Pauljensenia sp. 20925_1_27
GCA_041432775.1	JAPWAG000000000	SAMN30825736	20925_1_34	Pauljensenia sp. 20925_1_34
GCA_041432795.1	JAPWAF000000000	SAMN30825737	20925_1_91	Pauljensenia sp. 20925_1_91
GCA_041432705.1	JAPWAE000000000	SAMN30825738	27098_8_107	Pauljensenia sp. 27098_8_107
GCA_041432695.1	JAPWAD000000000	SAMN30825739	27098_8_83	Pauljensenia sp. 27098_8_83
GCA_041433155.1	JAPWAY000000000	SAMN30825718	20925_1_16	Prevotella histicola
GCA_041433075.1	JAPWAW000000000	SAMN30825720	27098_8_125	Prevotella jejuni
GCA_041433135.1	JAPWAX000000000	SAMN30825719	20925_1_32	Prevotella jejuni
GCA_041433105.1	JAPWAV000000000	SAMN30825721	27098_8_100	Prevotella melaninogenica
GCA_041433055.1	JAPWAU000000000	SAMN30825722	27098_8_132	Prevotella nigrescens
GCA_041433065.1	JAPWAT000000000	SAMN30825723	20925_1_50	Prevotella pallens
GCA_041433025.1	JAPWAR000000000	SAMN30825725	20925_1_30	Prevotella sp. 20925_1_30
GCA_041432965.1	JAPWAQ000000000	SAMN30825726	27098_8_182	Rothia aeria
GCA_041432975.1	JAPWAP000000000	SAMN30825727	27098_8_144	Rothia dentocariosa
GCA_041432925.1	JAPWAO000000000	SAMN30825728	27098_8_135	Rothia mucilaginosa
GCA_041432935.1	JAPWAN000000000	SAMN30825729	27098_8_136	Rothia mucilaginosa
GCA_041432895.1	JAPWAM000000000	SAMN30825730	27098_8_145	Rothia mucilaginosa
GCA_041432855.1	JAPWAK000000000	SAMN30825732	27098_8_172	Rothia mucilaginosa
GCA_041432905.1	JAPWAL000000000	SAMN30825731	27098_8_161	Rothia sp. 27098_8_161
GCA_041432805.1	JAPWAJ000000000	SAMN30825733	27098_8_27	Rothia sp. 27098_8_27
GCA_041432785.1	JAPWAI000000000	SAMN30825734	27098_8_29	Rothia sp. 27098_8_29
GCA_041432985.1	JAPWAS000000000	SAMN30825724	20925_1_83	Segatella salivae
GCA_041432725.1	JAPWAC000000000	SAMN30825740	27098_8_159	Staphylococcus aureus
GCA_041432715.1	JAPWAB000000000	SAMN30825741	20925_1_63	Staphylococcus capitis
GCA_041432615.1	JAPWAA000000000	SAMN30825742	27098_8_44	Staphylococcus capitis
GCA_041432635.1	JAPVZZ000000000	SAMN30825743	20925_1_31	Staphylococcus epidermidis
GCA_041432645.1	JAPVZY000000000	SAMN30825744	20925_1_59	Staphylococcus epidermidis
GCA_041431925.1	JAPVYP000000000	SAMN30825779	27098_8_173	Streptococcus anginosus
GCA_041432625.1	JAPVZX000000000	SAMN30825745	27098_8_53	Streptococcus chosunense
GCA_041432565.1	JAPVZV000000000	SAMN30825747	20925_1_21	Streptococcus constellatus
GCA_041432515.1	JAPVZS000000000	SAMN30825750	27098_8_101	Streptococcus gordonii
GCA_041432255.1	JAPVZG000000000	SAMN30825762	27098_8_93	Streptococcus mitis
GCA_041432265.1	JAPVZH000000000	SAMN30825761	27098_8_87	Streptococcus mitis
GCA_041432175.1	JAPVZC000000000	SAMN30825766	20925_1_10	Streptococcus parasanguinis
GCA_041432095.1	JAPVYZ000000000	SAMN30825769	27098_8_143	Streptococcus parasanguinis
GCA_041432005.1	JAPVYX000000000	SAMN30825771	27098_8_150	Streptococcus parasanguinis
GCA_041432025.1	JAPVYT000000000	SAMN30825775	27098_8_54	Streptococcus parasanguinis
GCA_041432015.1	JAPVYU000000000	SAMN30825774	27098_8_46	Streptococcus parasanguinis
GCA_041431875.1	JAPVYO000000000	SAMN30825780	20925_1_26	Streptococcus pseudopneumoniae
GCA_041431855.1	JAPVYM000000000	SAMN30825782	20925_1_13	Streptococcus salivarius
GCA_041431825.1	JAPVYL000000000	SAMN30825783	27098_8_110	Streptococcus salivarius
GCA_041431805.1	JAPVYK000000000	SAMN30825784	27098_8_117	Streptococcus salivarius
GCA_041431765.1	JAPVYJ000000000	SAMN30825785	27098_8_119	Streptococcus salivarius
GCA_041431785.1	JAPVYH000000000	SAMN30825787	27098_8_153	Streptococcus salivarius
GCA_041431755.1	JAPVYI000000000	SAMN30825786	27098_8_152	Streptococcus salivarius
GCA_041431655.1	JAPVYG000000000	SAMN30825788	27098_8_162	Streptococcus salivarius
GCA_041431895.1	JAPVYN000000000	SAMN30825781	20925_1_11	Streptococcus salivarius
GCA_041431695.1	JAPVYC000000000	SAMN30825792	27098_8_181	Streptococcus sanguinis
GCA_041431685.1	JAPVYE000000000	SAMN30825790	20925_1_22	Streptococcus sp. 20925_1_22
GCA_041432335.1	JAPVZM000000000	SAMN30825756	20925_1_24	Streptococcus sp. 20925_1_24
GCA_041432435.1	JAPVZQ000000000	SAMN30825752	20925_1_44	Streptococcus sp. 20925_1_44
GCA_041432365.1	JAPVZL000000000	SAMN30825757	20925_1_69	Streptococcus sp. 20925_1_69
GCA_041432125.1	JAPVZB000000000	SAMN30825767	20925_1_77	Streptococcus sp. 20925_1_77
GCA_041432345.1	JAPVZK000000000	SAMN30825758	27098_8_103	Streptococcus sp. 27098_8_103
GCA_041432295.1	JAPVZJ000000000	SAMN30825759	27098_8_109	Streptococcus sp. 27098_8_109
GCA_041432545.1	JAPVZU000000000	SAMN30825748	27098_8_113	Streptococcus sp. 27098_8_113
GCA_041432115.1	JAPVZA000000000	SAMN30825768	27098_8_12	Streptococcus sp. 27098_8_12
GCA_041431675.1	JAPVYD000000000	SAMN30825791	27098_8_134	Streptococcus sp. 27098_8_134
GCA_041432105.1	JAPVYY000000000	SAMN30825770	27098_8_148	Streptococcus sp. 27098_8_148
GCA_041431995.1	JAPVYW000000000	SAMN30825772	27098_8_177	Streptococcus sp. 27098_8_177
GCA_041432055.1	JAPVYV000000000	SAMN30825773	27098_8_186	Streptococcus sp. 27098_8_186
GCA_041432415.1	JAPVZP000000000	SAMN30825753	27098_8_22	Streptococcus sp. 27098_8_22
GCA_041432195.1	JAPVZF000000000	SAMN30825763	27098_8_23	Streptococcus sp. 27098_8_23
GCA_041432205.1	JAPVZE000000000	SAMN30825764	27098_8_51	Streptococcus sp. 27098_8_51
GCA_041431945.1	JAPVYS000000000	SAMN30825776	27098_8_66	Streptococcus sp. 27098_8_66
GCA_041432445.1	JAPVZO000000000	SAMN30825754	27098_8_69	Streptococcus sp. 27098_8_69
GCA_041432215.1	JAPVZD000000000	SAMN30825765	27098_8_70	Streptococcus sp. 27098_8_70
GCA_041432495.1	JAPVZT000000000	SAMN30825749	27098_8_73	Streptococcus sp. 27098_8_73
GCA_041431705.1	JAPVYF000000000	SAMN30825789	27098_8_74	Streptococcus sp. 27098_8_74
GCA_041432475.1	JAPVZR000000000	SAMN30825751	27098_8_75	Streptococcus sp. 27098_8_75
GCA_041432315.1	JAPVZI000000000	SAMN30825760	27098_8_76	Streptococcus sp. 27098_8_76
GCA_041431615.1	JAPVYB000000000	SAMN30825793	27098_8_82	Streptococcus sp. 27098_8_82
GCA_041432595.1	JAPVZW000000000	SAMN30825746	27098_8_86	Streptococcus sp. 27098_8_86
GCA_041432385.1	JAPVZN000000000	SAMN30825755	27098_8_91	Streptococcus sp. 27098_8_91
GCA_041431915.1	JAPVYR000000000	SAMN30825777	27098_8_98	Streptococcus sp. 27098_8_98
GCA_041431935.1	JAPVYQ000000000	SAMN30825778	27098_8_99	Streptococcus sp. 27098_8_99
GCA_041431485.1	JAPVXU000000000	SAMN30825800	27098_8_81	Veillonella atypica
GCA_041431435.1	JAPVXV000000000	SAMN30825799	27098_8_79	Veillonella atypica
GCA_041431595.1	JAPVXY000000000	SAMN30825796	27098_8_30	Veillonella atypica
GCA_041431565.1	JAPVYA000000000	SAMN30825794	20925_1_29	Veillonella atypica
GCA_041431545.1	JAPVXX000000000	SAMN30825797	27098_8_52	Veillonella atypica
GCA_041431585.1	JAPVXZ000000000	SAMN30825795	27098_8_102	Veillonella atypica
GCA_041431455.1	JAPWCM000000000	SAMN30825802	27098_8_111	Veillonella nakazawae
GCA_041431505.1	JAPVXS000000000	SAMN30825803	27098_8_62	Veillonella rogosae
GCA_041431445.1	JAPVXT000000000	SAMN30825801	20925_1_51	Veillonella sp. 20925_1_51
GCA_041431535.1	JAPVXW000000000	SAMN30825798	27098_8_77	Veillonella sp. 27098_8_77

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The thoracic airway microbiota genome sequencing and assembly

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