1000 Genomes Full Production low coverage WGS popu... (ID 59771) - BioProject

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Accession: PRJNA59771 ID: 59771

1000 Genomes Full Production low coverage WGS population sequencing (human)

See Genome Information for Homo sapiens

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This project is a component of the The 1000 Genomes Project

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5 additional projects are components of the The 1000 Genomes Project.

The purpose of the project is to support the discovery and understanding of genetic variants that influence human disease

Accession	PRJNA59771
Type	Umbrella project
Organism	Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
Submission	Registration date: 1-Nov-2010 1000 Genomes Project - Welcome Trust Sanger Institute - National Human Genome Research Institute
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
SRA Experiments	19817
Other datasets
BioSample	2832

SRA Data Details

Parameter	Value
Data volume, Gbases	274,419
Data volume, Tbytes	170.05

1000 Genomes Full Production low coverage WGS population sequencing encompasses the following 52 sub-projects:

Project Type

Number of Projects

Exome

BioProject accession	Organism	Title
PRJNA177403	Homo sapiens	Whole genome sequencing of (PUR) Puerto Rican in Puerto Rico HapMap population DNA for sequencing was extracted from whole blood (1000 Genomes Project)
PRJNA194108	Homo sapiens	CompleteGenomics sequencing of (PUR) Puerto Rican in Puerto Rico HapMap population DNA for sequencing was extracted from whole blood (1000 Genomes Project)

Genome sequencing

Highest level of assembly :

SRA or Trace
No data links
Total

40
9
49

BioProject accession	Assembly level	Organism	Title
PRJNA33859	SRA or Trace	Homo sapiens	Whole genome sequencing of (JPT) Japanese in Tokyo, Japan HapMap population (1000 Genomes Project)
PRJNA33865	SRA or Trace	Homo sapiens	Whole genome sequencing of (YRI) Yoruba HapMap population (1000 Genomes Project)
PRJNA41223	SRA or Trace	Homo sapiens	Whole genome sequencing of (GBR) British from England and Scotland HapMap population (1000 Genomes Project)
PRJNA42569	SRA or Trace	Homo sapiens	Whole genome sequencing of (ACB) African Caribbean in Barbados HapMap population (1000 Genomes Project)
PRJNA59833	SRA or Trace	Homo sapiens	Whole genome sequencing of (PJL) Punjabi HapMap population (1000 Genomes Project)

List all 49 'Genome sequencing' projects...

BioProject accession	Assembly level	Organism	Title
PRJNA33859	SRA or Trace	Homo sapiens	Whole genome sequencing of (JPT) Japanese in Tokyo, Japan HapMap population (1000 Genomes Project)
PRJNA33865	SRA or Trace	Homo sapiens	Whole genome sequencing of (YRI) Yoruba HapMap population (1000 Genomes Project)
PRJNA41223	SRA or Trace	Homo sapiens	Whole genome sequencing of (GBR) British from England and Scotland HapMap population (1000 Genomes Project)
PRJNA42569	SRA or Trace	Homo sapiens	Whole genome sequencing of (ACB) African Caribbean in Barbados HapMap population (1000 Genomes Project)
PRJNA59833	SRA or Trace	Homo sapiens	Whole genome sequencing of (PJL) Punjabi HapMap population (1000 Genomes Project)
PRJNA33831	SRA or Trace	Homo sapiens	Whole genome sequencing of (CEU) Utah residents with ancestry from Northern and Western Europe - CEPH - HapMap population (1000 Genomes Project)
PRJNA33835	SRA or Trace	Homo sapiens	Whole genome sequencing of (LWK) Luhya in Webuye, Kenya HapMap population (1000 Genomes Project)
PRJNA33847	SRA or Trace	Homo sapiens	Whole genome sequencing of (TSI) Toscani in Italia HapMap population (1000 Genomes Project)
PRJNA33851	SRA or Trace	Homo sapiens	Whole genome sequencing of (CHB) Han Chinese in Beijing, China HapMap population (1000 Genomes Project)
PRJNA38443	SRA or Trace	Homo sapiens	Whole genome sequencing of (ASW) African ancestry in South West US population (1000 Genomes Project)
PRJNA38445	SRA or Trace	Homo sapiens	Whole genome sequencing of (MXL) Mexican ancestry in Los Angeles, California HapMap population (1000 Genomes Project)
PRJNA38447	SRA or Trace	Homo sapiens	Whole genome sequencing of (GIH) Gujarati (India) ancestry, in Housto n, Texas US HapMap population (1000 Genomes Project)
PRJNA38449	SRA or Trace	Homo sapiens	Whole genome sequencing of (FIN) Finnish in Finland HapMap population (1000 Genomes Project)
PRJNA41139	SRA or Trace	Homo sapiens	Whole genome sequencing of (CHS) Southern Han Chinese population HapMap population (1000 Genomes Project)
PRJNA42557	SRA or Trace	Homo sapiens	Whole genome sequencing of (IBS) Iberian populations in Spain HapMap population (1000 Genomes Project)
PRJNA42559	SRA or Trace	Homo sapiens	Whole genome sequencing of (CDX) Chinese Dai in Xishuangbanna, China HapMap population (1000 Genomes Project)
PRJNA42561	No data links	Homo sapiens	Whole genome sequencing of (CHD) Chinese in metropolitan Denver, CO HapMap population (1000 Genomes Project)
PRJNA42563	SRA or Trace	Homo sapiens	Whole genome sequencing of (GWD) Gambian in Western Division, The Gambia HapMap population (1000 Genomes Project)
PRJNA42571	SRA or Trace	Homo sapiens	Whole genome sequencing of (PEL) Peruvian in Lima, Peru HapMap population (1000 Genomes Project)
PRJNA42573	SRA or Trace	Homo sapiens	Whole genome sequencing of (PUR) Puerto Rican in Puerto Rico HapMap population (1000 Genomes Project)
PRJNA42575	SRA or Trace	Homo sapiens	Whole genome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam HapMap population (1000 Genomes Project)
PRJNA42577	No data links	Homo sapiens	Whole genome sequencing of (MAB) malawian in Blantyre, Malawi HapMap population (1000 Genomes Project)
PRJNA60131	SRA or Trace	Homo sapiens	Whole genome sequencing of (CLM) Colombia from Medellin, Colombia HapMap population (1000 Genomes Project)
PRJNA60179	No data links	Homo sapiens	Whole genome sequencing of (RDH) Reddy in Hyderabad, India HapMap population (1000 Genomes Project)
PRJNA173696	SRA or Trace	Homo sapiens	Whole genome sequencing of (MSL) Mende in Sierra Leone HapMap population (1000 Genomes Project)
PRJNA173697	SRA or Trace	Homo sapiens	Whole genome sequencing of (ESN) Esan in Nigeria HapMap population (1000 Genomes Project)
PRJNA173698	SRA or Trace	Homo sapiens	Whole genome sequencing of (BEB) Bengali in Bangladesh HapMap population (1000 Genomes Project)
PRJNA173699	SRA or Trace	Homo sapiens	Whole genome sequencing of (STU) Sri Lankan Tamil in the UK HapMap population (1000 Genomes Project)
PRJNA173700	SRA or Trace	Homo sapiens	Whole genome sequencing of (ITU) Indian Telugu in the UK HapMap population (1000 Genomes Project)
PRJNA177916	SRA or Trace	Homo sapiens	CompleteGenomics sequencing of (CEU) Utah residents with ancestry from Northern and Western Europe - CEPH - HapMap population (1000 Genomes Project)
PRJNA177963	SRA or Trace	Homo sapiens	CompleteGenomics sequencing of (YRI) Yoruba HapMap population (1000 Genomes Project)
PRJNA177964	SRA or Trace	Homo sapiens	CompleteGenomics sequencing of (LWK) Luhya HapMap population (1000 Genomes Project)
PRJNA177965	SRA or Trace	Homo sapiens	CompleteGenomics sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam (1000 Genomes Project)
PRJNA177966	SRA or Trace	Homo sapiens	CompleteGenomics sequencing of (PUR) Puerto Rican in Puerto Rico (1000 Genomes Project)
PRJNA177967	No data links	Homo sapiens	CompleteGenomics sequencing of (PEL) Peruvian in Lima, Peru (1000 Genomes Project)
PRJNA177969	SRA or Trace	Homo sapiens	CompleteGenomics sequencing of (CHS) Han Chinese population (1000 Genomes Project)
PRJNA177970	No data links	Homo sapiens	CompleteGenomics sequencing of (PJL) Punjabi HapMap population (1000 Genomes Project)
PRJNA177408	No data links	Homo sapiens	Whole genome sequencing of (CHS) Southern Han Chinese HapMap population DNA for sequencing was extracted from whole blood (1000 Genomes Project)
PRJNA177401	No data links	Homo sapiens	Whole genome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam. DNA for sequencing was extracted from whole blood (1000 Genomes Project)
PRJNA177409	No data links	Homo sapiens	Whole genome sequencing of (ACB) African Caribbean in Barbados HapMap population. DNA for sequencing was extracted from whole blood (1000 Genomes Project)
PRJNA177410	No data links	Homo sapiens	Whole genome sequencing of (PEL) Peruvian in Lima, Peru HapMap population. DNA for sequencing was extracted from whole blood (1000 Genomes Project)
PRJNA177415	SRA or Trace	Homo sapiens	Whole genome sequencing of (STU) Sri Lankan Tamil in the UK HapMap population. DNA for sequencing was extracted from whole blood (1000 Genomes Project)
PRJNA177421	SRA or Trace	Homo sapiens	Whole genome sequencing of (ITU) Indian Telugu in the UK HapMap population. DNA for sequencing was extracted from whole blood (1000 Genomes Project)
PRJNA186949	SRA or Trace	Homo sapiens	High coverage sequencing of (CEU) Utah residents with ancestry from Northern and Western Europe - CEPH - HapMap population (1000 Genomes Project)
PRJNA194104	SRA or Trace	Homo sapiens	CompleteGenomics sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam. DNA for sequencing was extracted from whole blood (1000 Genomes Project)
PRJNA194111	SRA or Trace	Homo sapiens	CompleteGenomics sequencing of (PJL) Puerto Rican in Puerto Rico HapMap population DNA for sequencing was extracted from whole blood (1000 Genomes Project)
PRJNA194560	SRA or Trace	Homo sapiens	CompleteGenomics sequencing of (LWK) Luhya HapMap population DNA for sequencing was extracted from whole blood (1000 Genomes Project)
PRJNA196132	SRA or Trace	Homo sapiens	CompleteGenomics sequencing of (YRI) Yoruba HapMap population. DNA for sequencing was extracted from whole blood (1000 Genomes Project)
PRJNA260854	SRA or Trace	Homo sapiens	High Coverage PCR Free sequencing of Individuals from 24 1000 Genomes populations (1000 Genomes Project)

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Other

BioProject accession	Organism	Title
PRJNA262923	Homo sapiens	1000 Genomes Project phase3 (1000 Genomes Project)

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