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Accession: PRJNA613831 ID: 613831

Escherichia coli

GenomeTrakr Project: Washington State Department of Agriculture

See Genome Information for Escherichia coli
Whole genome sequencing of pure-cultured microbial pathogens as part of the US Food and Drug Administration's WGS surveillance effort for the rapid traceback of foodborne pathogens.
AccessionPRJNA613831
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
SubmissionRegistration date: 21-Dec-2020
Washington State Department of Agriculture GenomeTrakr submission group
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)264
SRA Experiments264
Other datasets
BioSample264
Assembly264
Assembly details:
Assembly levelNumber of Assemblies
264
264
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_030221125.1ContigABLPPK000000000SAMN33444139
WSDA219
GCA_031804455.1ContigABMTXY000000000SAMN36459302
WSDA308
GCA_031804435.1ContigABMTXV000000000SAMN36459301
WSDA307
GCA_031804395.1ContigABMTXW000000000SAMN36459305
WSDA311
GCA_031804375.1ContigABMTXX000000000SAMN36459296
WSDA302
GCA_031616595.1ContigABMNHD000000000SAMN37046944
WSDA335
GCA_031616575.1ContigABMNHE000000000SAMN37046945
WSDA336
GCA_031616555.1ContigABMNHC000000000SAMN37046943
WSDA334
GCA_031616515.1ContigABMNHA000000000SAMN36459310
WSDA316
GCA_031616535.1ContigABMNHB000000000SAMN36459311
WSDA317
GCA_031616495.1ContigABMNGZ000000000SAMN36459309
WSDA315
GCA_031616435.1ContigABMNGW000000000SAMN36459308
WSDA314
GCA_031616415.1ContigABMNGU000000000SAMN37046946
WSDA337
GCA_031616395.1ContigABMNGV000000000SAMN36459307
WSDA313
GCA_031616375.1ContigABMNGT000000000SAMN36459306
WSDA312
GCA_031616355.1ContigABMNGS000000000SAMN36459288
WSDA294
GCA_032508325.1ContigABNOCC000000000SAMN36459291
WSDA297
GCA_032508075.1ContigABNOBT000000000SAMN33444138
WSDA218
GCA_032508055.1ContigABNOBU000000000SAMN36459293
WSDA299
GCA_032508015.1ContigABNOBS000000000SAMN36459292
WSDA298
GCA_032507965.1ContigABNOBR000000000SAMN33444134
WSDA214
GCA_032507945.1ContigABNOBQ000000000SAMN33444125
WSDA205
GCA_032508245.1ContigABNOBX000000000SAMN36459287
WSDA293
GCA_032508205.1ContigABNOBY000000000SAMN36459289
WSDA295
GCA_032508185.1ContigABNOBW000000000SAMN36459286
WSDA279
GCA_032508145.1ContigABNOBV000000000SAMN33444143
WSDA223
GCA_032508125.1ContigABNOBZ000000000SAMN36459285
WSDA278
GCA_032508345.1ContigABNOCA000000000SAMN36459290
WSDA296
GCA_032424895.1ContigABNKUU000000000SAMN36459303
WSDA309
GCA_032424875.1ContigABNKUS000000000SAMN36459300
WSDA306
GCA_032424855.1ContigABNKUR000000000SAMN36459298
WSDA304
GCA_032424835.1ContigABNKUT000000000SAMN36459299
WSDA305
GCA_032424815.1ContigABNKUQ000000000SAMN36459304
WSDA310
GCA_032424795.1ContigABNKUO000000000SAMN36459294
WSDA300
GCA_032424775.1ContigABNKUP000000000SAMN36459295
WSDA301
GCA_032728325.1ContigABNWJN000000000SAMN35889884
WSDA292
GCA_032727755.1ContigABNWIW000000000SAMN35889876
WSDA284
GCA_032727985.1ContigABNWJC000000000SAMN35889883
WSDA291
GCA_032727965.1ContigABNWJB000000000SAMN35889882
WSDA290
GCA_032727815.1ContigABNWIY000000000SAMN35889878
WSDA286
GCA_032727865.1ContigABNWJF000000000SAMN35889880
WSDA288
GCA_032727835.1ContigABNWIZ000000000SAMN35889879
WSDA287
GCA_032727925.1ContigABNWJD000000000SAMN35889881
WSDA289
GCA_032727795.1ContigABNWIX000000000SAMN35889877
WSDA285
GCA_032727735.1ContigABNWIV000000000SAMN35889875
WSDA281
GCA_033203455.1ContigABONAA000000000SAMN36459297
WSDA303
GCA_022694005.1ContigABFNWH000000000SAMN26565681
WSDA166
GCA_022589995.1ContigABFJKS000000000SAMN25653020
WSDA119
GCA_022589515.1ContigABFJKQ000000000SAMN26565655
WSDA140
GCA_022589495.1ContigABFJKO000000000SAMN25653014
WSDA109
GCA_022589475.1ContigABFJKP000000000SAMN25653024
WSDA123
GCA_022592595.1ContigABFJPW000000000SAMN25653026
WSDA125
GCA_022591395.1ContigABFJOA000000000SAMN26565650
WSDA135
GCA_022588015.1ContigABFJHR000000000SAMN26565653
WSDA138
GCA_022587995.1ContigABFJHQ000000000SAMN25653031
WSDA130
GCA_022587975.1ContigABFJHP000000000SAMN25653029
WSDA128
GCA_022587415.1ContigABFJGN000000000SAMN25653023
WSDA122
GCA_022587395.1ContigABFJGL000000000SAMN25653021
WSDA120
GCA_022587375.1ContigABFJGJ000000000SAMN25653018
WSDA113
GCA_022587345.1ContigABFJGH000000000SAMN25653017
WSDA112
GCA_022587335.1ContigABFJGK000000000SAMN25653034
WSDA133
GCA_022587315.1ContigABFJGG000000000SAMN25653032
WSDA131
GCA_022587275.1ContigABFJGI000000000SAMN25653030
WSDA129
GCA_022587295.1ContigABFJGF000000000SAMN25653028
WSDA127
GCA_022587255.1ContigABFJGD000000000SAMN25653027
WSDA126
GCA_022587235.1ContigABFJGE000000000SAMN25653025
WSDA124
GCA_022593915.1ContigABFJSK000000000SAMN25653022
WSDA121
GCA_022593875.1ContigABFJSI000000000SAMN26565651
WSDA136
GCA_022597695.1ContigABFJXQ000000000SAMN25653015
WSDA110
GCA_022599395.1ContigABFJZB000000000SAMN26565658
WSDA143
GCA_022630075.1ContigABFLCE000000000SAMN26565668
WSDA153
GCA_022630055.1ContigABFLCG000000000SAMN26565664
WSDA149
GCA_022630035.1ContigABFLCJ000000000SAMN26565660
WSDA145
GCA_022629715.1ContigABFLBR000000000SAMN26565674
WSDA159
GCA_022629655.1ContigABFLBP000000000SAMN26565670
WSDA155
GCA_022629275.1ContigABFLAR000000000SAMN26565672
WSDA157
GCA_022628795.1ContigABFKZY000000000SAMN26565671
WSDA156
GCA_022632555.1ContigABFLFH000000000SAMN26565690
WSDA175
GCA_022632535.1ContigABFLFE000000000SAMN26565683
WSDA168
GCA_022632955.1ContigABFLFY000000000SAMN26565689
WSDA174
GCA_022633295.1ContigABFLGN000000000SAMN26565682
WSDA167
GCA_022633275.1ContigABFLGR000000000SAMN26565680
WSDA165
GCA_022633255.1ContigABFLGP000000000SAMN26565679
WSDA164
GCA_022633195.1ContigABFLGL000000000SAMN26565677
WSDA162
GCA_022633215.1ContigABFLGO000000000SAMN26565691
WSDA176
GCA_022633175.1ContigABFLGM000000000SAMN26565687
WSDA172
GCA_022632675.1ContigABFLFM000000000SAMN26565676
WSDA161
GCA_022632895.1ContigABFLFX000000000SAMN26565688
WSDA173
GCA_022632875.1ContigABFLFW000000000SAMN26565685
WSDA170
GCA_022632815.1ContigABFLFQ000000000SAMN26565686
WSDA171
GCA_022632795.1ContigABFLFV000000000SAMN26565669
WSDA154
GCA_022632775.1ContigABFLFP000000000SAMN26565678
WSDA163
GCA_022634755.1ContigABFLJU000000000SAMN26565684
WSDA169
GCA_022666615.1ContigABFMQJ000000000SAMN26565659
WSDA144
GCA_022666595.1ContigABFMQL000000000SAMN25653019
WSDA118
GCA_022666575.1ContigABFMQK000000000SAMN26565657
WSDA142
GCA_022666555.1ContigABFMQH000000000SAMN26565652
WSDA137
GCA_022666535.1ContigABFMQI000000000SAMN26565656
WSDA141
GCA_022666515.1ContigABFMQF000000000SAMN26565654
WSDA139
GCA_022666495.1ContigABFMQG000000000SAMN25653016
WSDA111
GCA_022666475.1ContigABFMQE000000000SAMN25653033
WSDA132
GCA_022659075.1ContigABFMIW000000000SAMN26565667
WSDA152
GCA_022659035.1ContigABFMIU000000000SAMN26565666
WSDA151
GCA_022659015.1ContigABFMIV000000000SAMN26565675
WSDA160
GCA_022658995.1ContigABFMIP000000000SAMN26565661
WSDA146
GCA_022658975.1ContigABFMIT000000000SAMN26565665
WSDA150
GCA_022658955.1ContigABFMIS000000000SAMN26565663
WSDA148
GCA_022658935.1ContigABFMIR000000000SAMN26565662
WSDA147
GCA_022658915.1ContigABFMIQ000000000SAMN26565673
WSDA158
GCA_022376875.1ContigABFENI000000000SAMN25652770
WSDA104
GCA_022376735.1ContigABFENE000000000SAMN25652773
WSDA107
GCA_022376695.1ContigABFEND000000000SAMN25652768
WSDA102
GCA_025521215.1ContigABIOJJ000000000SAMN30964107
WSDA199
GCA_025521195.1ContigABIOJI000000000SAMN30964106
WSDA198
GCA_025521175.1ContigABIOJH000000000SAMN30964105
WSDA197
GCA_025521155.1ContigABIOJE000000000SAMN30964102
WSDA194
GCA_025521135.1ContigABIOJG000000000SAMN30964104
WSDA196
GCA_025521115.1ContigABIOJF000000000SAMN30964103
WSDA195
GCA_025521085.1ContigABIOJC000000000SAMN30964100
WSDA192
GCA_025521075.1ContigABIOJB000000000SAMN30964109
WSDA201
GCA_025521055.1ContigABIOJD000000000SAMN30964101
WSDA193
GCA_025521035.1ContigABIOIZ000000000SAMN30964099
WSDA191
GCA_025520975.1ContigABIOIY000000000SAMN30964098
WSDA190
GCA_025521015.1ContigABIOJA000000000SAMN30964108
WSDA200
GCA_025448935.1ContigABIMRC000000000SAMN30964093
WSDA185
GCA_025448925.1ContigABIMRE000000000SAMN30964097
WSDA189
GCA_025448905.1ContigABIMRB000000000SAMN30964092
WSDA184
GCA_025448895.1ContigABIMRD000000000SAMN30964096
WSDA188
GCA_025449095.1ContigABIMRL000000000SAMN30964094
WSDA186
GCA_025449065.1ContigABIMRK000000000SAMN30964087
WSDA179
GCA_025448875.1ContigABIMQY000000000SAMN30964089
WSDA181
GCA_025448855.1ContigABIMRA000000000SAMN30964091
WSDA183
GCA_025448835.1ContigABIMQZ000000000SAMN30964090
WSDA182
GCA_025448815.1ContigABIMQX000000000SAMN30964086
WSDA178
GCA_025370915.1ContigABIKJS000000000SAMN30954130
WSDA203
GCA_029833075.1ContigABLPMZ000000000SAMN34236192
WSDA282
GCA_029833015.1ContigABLPMT000000000SAMN34236189
WSDA276
GCA_029833035.1ContigABLPMU000000000SAMN34236190
WSDA277
GCA_029832675.1ContigABLPMG000000000SAMN34035292
WSDA251
GCA_029832755.1ContigABLPML000000000SAMN34236191
WSDA280
GCA_029832735.1ContigABLPMI000000000SAMN34035300
WSDA259
GCA_029832715.1ContigABLPMD000000000SAMN34035291
WSDA250
GCA_029832695.1ContigABLPLZ000000000SAMN33444135
WSDA215
GCA_029832775.1ContigABLPMJ000000000SAMN34035308
WSDA267
GCA_029832615.1ContigABLPMC000000000SAMN34236193
WSDA283
GCA_029590095.1ContigABLJIV000000000SAMN34035302
WSDA261
GCA_029590075.1ContigABLJIY000000000SAMN34035301
WSDA260
GCA_029590055.1ContigABLJIX000000000SAMN34035303
WSDA262
GCA_029590035.1ContigABLJIU000000000SAMN34035299
WSDA258
GCA_029589995.1ContigABLJIS000000000SAMN34035297
WSDA256
GCA_029590015.1ContigABLJIW000000000SAMN34035298
WSDA257
GCA_029589975.1ContigABLJIT000000000SAMN34035296
WSDA255
GCA_029589955.1ContigABLJIP000000000SAMN34071117
WSDA275
GCA_029589925.1ContigABLJIL000000000SAMN34035295
WSDA254
GCA_029589915.1ContigABLJIO000000000SAMN34035315
WSDA274
GCA_029589895.1ContigABLJIM000000000SAMN34035314
WSDA273
GCA_029589875.1ContigABLJIR000000000SAMN34035313
WSDA272
GCA_029589855.1ContigABLJIQ000000000SAMN34035312
WSDA271
GCA_029589805.1ContigABLJIF000000000SAMN34035309
WSDA268
GCA_029589815.1ContigABLJIK000000000SAMN34035310
WSDA269
GCA_029589775.1ContigABLJIJ000000000SAMN34035306
WSDA265
GCA_029589795.1ContigABLJIN000000000SAMN34035311
WSDA270
GCA_029589755.1ContigABLJIG000000000SAMN34035307
WSDA266
GCA_029589705.1ContigABLJIH000000000SAMN34035305
WSDA264
GCA_029589695.1ContigABLJIC000000000SAMN34035294
WSDA253
GCA_029589665.1ContigABLJID000000000SAMN34035293
WSDA252
GCA_029589655.1ContigABLJIE000000000SAMN34035304
WSDA263
GCA_029272145.1ContigABLBFE000000000SAMN33444132
WSDA212
GCA_029272125.1ContigABLBFC000000000SAMN33444131
WSDA211
GCA_029272105.1ContigABLBFD000000000SAMN33444130
WSDA210
GCA_029272085.1ContigABLBFB000000000SAMN33444129
WSDA209
GCA_029272065.1ContigABLBFA000000000SAMN33444128
WSDA208
GCA_029272045.1ContigABLBEZ000000000SAMN33444127
WSDA207
GCA_029272025.1ContigABLBEW000000000SAMN33444124
WSDA204
GCA_029271985.1ContigABLBEX000000000SAMN33444145
WSDA225
GCA_029272005.1ContigABLBEY000000000SAMN33444126
WSDA206
GCA_029271965.1ContigABLBEV000000000SAMN33444142
WSDA222
GCA_029271945.1ContigABLBEU000000000SAMN33444144
WSDA224
GCA_029271925.1ContigABLBET000000000SAMN33444141
WSDA221
GCA_029271905.1ContigABLBES000000000SAMN33444140
WSDA220
GCA_029271885.1ContigABLBER000000000SAMN33444137
WSDA217
GCA_029271865.1ContigABLBEQ000000000SAMN33444136
WSDA216
GCA_029271845.1ContigABLBEP000000000SAMN33444133
WSDA213
GCA_029271825.1ContigABLBEO000000000SAMN30964095
WSDA187
GCA_029271805.1ContigABLBEN000000000SAMN30964088
WSDA180
GCA_029337195.1ContigABLDRX000000000SAMN33444167
WSDA247
GCA_029336535.1ContigABLDRR000000000SAMN33444162
WSDA242
GCA_029336515.1ContigABLDRQ000000000SAMN33444161
WSDA241
GCA_029336495.1ContigABLDRO000000000SAMN33444159
WSDA239
GCA_029336615.1ContigABLDRV000000000SAMN33444148
WSDA228
GCA_029336595.1ContigABLDRS000000000SAMN33444165
WSDA245
GCA_029336575.1ContigABLDRT000000000SAMN33444163
WSDA243
GCA_029336555.1ContigABLDRU000000000SAMN33444164
WSDA244
GCA_029336795.1ContigABLDSG000000000SAMN33444155
WSDA235
GCA_029336775.1ContigABLDSE000000000SAMN33444154
WSDA234
GCA_029336755.1ContigABLDSF000000000SAMN33444153
WSDA233
GCA_029336735.1ContigABLDSD000000000SAMN33444152
WSDA232
GCA_029336695.1ContigABLDSA000000000SAMN33444151
WSDA231
GCA_029336715.1ContigABLDSB000000000SAMN33444150
WSDA230
GCA_029336675.1ContigABLDSC000000000SAMN33444149
WSDA229
GCA_029336655.1ContigABLDRZ000000000SAMN33444169
WSDA249
GCA_029336635.1ContigABLDRY000000000SAMN33444168
WSDA248
GCA_029336475.1ContigABLDRN000000000SAMN33444158
WSDA238
GCA_029336455.1ContigABLDRP000000000SAMN33444160
WSDA240
GCA_029336435.1ContigABLDRM000000000SAMN33444156
WSDA236
GCA_029336415.1ContigABLDRJ000000000SAMN33444157
WSDA237
GCA_029336395.1ContigABLDRL000000000SAMN33444147
WSDA227
GCA_029336375.1ContigABLDRK000000000SAMN33444146
WSDA226
GCA_029373905.1ContigABLDRW000000000SAMN33444166
WSDA246
GCA_017082505.1ContigAAZBHM000000000SAMN17816929
WSDA3
GCA_017717675.1ContigAAZSPP000000000SAMN18472700
WSDA4
GCA_017686015.1ContigAAZSEV000000000SAMN18492554
WSDA5
GCA_020545805.1ContigABDINR000000000SAMN22416944
WSDA89
GCA_021501645.1ContigABEQYI000000000SAMN25046351
WSDA101
GCA_021501595.1ContigABEQYP000000000SAMN25044506
WSDA117
GCA_021501575.1ContigABEQYM000000000SAMN25046350
WSDA100
GCA_021501505.1ContigABEQYL000000000SAMN25046349
WSDA99
GCA_021501475.1ContigABEQYH000000000SAMN25046348
WSDA98
GCA_020911185.1ContigABDXCI000000000SAMN23341794
WSDA96
GCA_022020435.1ContigABEZCH000000000SAMN25652774
WSDA108
GCA_022020335.1ContigABEZCF000000000SAMN25652772
WSDA106
GCA_022020305.1ContigABEZCE000000000SAMN25652769
WSDA103
GCA_022019515.1ContigABEZBC000000000SAMN25652767
WSDA134
GCA_022019495.1ContigABEZBD000000000SAMN25652771
WSDA105
GCA_016133665.1ContigAAXXCI000000000SAMN17098073
WSDA1
GCA_040711045.1ContigABTLYS000000000SAMN42466922
WSDA386
GCA_040711035.1ContigABTLYT000000000SAMN42466923
WSDA387
GCA_043647215.1ContigABVZMK000000000SAMN44052862
WSDA464
GCA_043647055.1ContigABVZMD000000000SAMN44052855
WSDA457
GCA_043647035.1ContigABVZMC000000000SAMN44052863
WSDA465
GCA_043647015.1ContigABVZMA000000000SAMN44052854
WSDA456
GCA_043646995.1ContigABVZLZ000000000SAMN44052853
WSDA455
GCA_043647075.1ContigABVZMB000000000SAMN44052864
WSDA466
GCA_043647195.1ContigABVZMJ000000000SAMN44052861
WSDA463
GCA_043647175.1ContigABVZMI000000000SAMN44052860
WSDA462
GCA_043647115.1ContigABVZMF000000000SAMN44052857
WSDA459
GCA_043647155.1ContigABVZMG000000000SAMN44052858
WSDA460
GCA_043647135.1ContigABVZMH000000000SAMN44052859
WSDA461
GCA_043647095.1ContigABVZME000000000SAMN44052856
WSDA458
GCA_043495795.1ContigABVYVD000000000SAMN44052865
WSDA467
GCA_042442115.1ContigABVLGM000000000SAMN43867657
WSDA407
GCA_042442155.1ContigABVLGL000000000SAMN43867658
WSDA408
GCA_042442135.1ContigABVLGN000000000SAMN43867659
WSDA409
GCA_042442075.1ContigABVLGK000000000SAMN43867656
WSDA406
GCA_042442055.1ContigABVLGI000000000SAMN43867654
WSDA404
GCA_042442035.1ContigABVLGJ000000000SAMN43867655
WSDA405
GCA_042442015.1ContigABVLGG000000000SAMN43867653
WSDA403
GCA_042274365.1ContigABVBNW000000000SAMN43851123
WSDA468
GCA_043153155.1ContigABVWZN000000000SAMN44052840
WSDA443
GCA_043155045.1ContigABVXDC000000000SAMN44052849
WSDA451
GCA_043155035.1ContigABVXDD000000000SAMN44052851
WSDA453
GCA_043155015.1ContigABVXDB000000000SAMN44052850
WSDA452
GCA_043154995.1ContigABVXDA000000000SAMN44052848
WSDA450
GCA_043154975.1ContigABVXCV000000000SAMN44052847
WSDA449
GCA_043154955.1ContigABVXCY000000000SAMN44052846
WSDA448
GCA_043154925.1ContigABVXCX000000000SAMN44052845
WSDA447
GCA_043154905.1ContigABVXCZ000000000SAMN44052844
WSDA446
GCA_043154885.1ContigABVXCW000000000SAMN44052852
WSDA454
GCA_043154865.1ContigABVXCU000000000SAMN44052843
WSDA445
GCA_043154845.1ContigABVXCT000000000SAMN44052842
WSDA444
GCA_043092505.1ContigABVWUW000000000SAMN44052839
WSDA442
GCA_043092485.1ContigABVWUU000000000SAMN44052838
WSDA441
GCA_036978075.1ContigABQNMF000000000SAMN40230640
WSDA383
GCA_037824505.1ContigABRKKS000000000SAMN40647179
WSDA385
SRA Data Details
ParameterValue
Data volume, Gbases142
Data volume, Mbytes85775

Supplemental Content

Recent activity

  • Escherichia coli
    Escherichia coli
    GenomeTrakr Project: Washington State Department of Agriculture
    BioProject

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