ID 624308 - BioProject

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Accession: PRJNA624308 ID: 624308

CeMbio Microbial Genomes and Sequencing Reads

Here we introduce CeMbio, a simplified natural Caenorhabditis elegans microbiota derived from our meta-analysis of the natural microbiome of this nematode. More...

Accession	PRJNA624308
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Dirksen P et al., "CeMbio - The Caenorhabditis elegans Microbiome Resource.", G3 (Bethesda), 2020 Sep 2;10(9):3025-3039
Grants	"Microbial programming of host physiology" (Grant ID DP2 DK116645, National Institute of Diabetes and Digestive and Kidney Diseases) "CRC 1182 Origin and Function of Metaorganisms" (Grant ID CRC1182-A1.1, Deutsche Forschungsgemeinschaft) "Germany's Excellence Strategy" (Grant ID EXC 2167–39088401, Deutsche Forschungsgemeinschaft) "DOE JGI’s Community Science Program" (Grant ID CSP-503338, 1)Joint Genome Institute 2) Department of Energy)
Submission	Registration date: 10-Apr-2020 None
Related Resources	CeMbio central wiki regrouping information related to the project.
Relevance	Model Organism

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6
WGS master	2
Genomic DNA	4
SRA Experiments	3
Protein Sequences	19365
Publications
PubMed	1
PMC	1
Other datasets
BioSample	9
Assembly	6

Assembly details:

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Assembly level

Number of Assemblies

Chromosome

Contig

Total

4
2
6

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_014109725.1		1	SAMN14598231	BIGb0172	Comamonas piscis
GCA_014109705.1		1	SAMN14598237	CEent1	Enterobacter hormaechei
GCA_013450275.1	JACAWY000000000		SAMN14598232	BIGb0393	Pantoea nemavictus
GCA_014109765.1		1	SAMN14598238	MSPm1	Pseudomonas berkeleyensis
GCA_014109745.1		1	SAMN14598230	BIGb0170	Sphingobacterium paramultivorum
GCA_013450245.1	JACAWX000000000		SAMN14598233	JUb19	Stenotrophomonas indicatrix

SRA Data Details

Parameter	Value
Data volume, Gbases	2
Data volume, Mbytes	1007

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CeMbio Microbial Genomes and Sequencing Reads

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