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Accession: PRJNA641122 ID: 641122

Pogoniulus pusillus (red-fronted tinkerbird) genome, bPogPus1

See Genome Information for Pogoniulus pusillus
The red-fronted tinkerbird, (Pogoniulus pusillus) is a small African barbet that has a strikingly marked red forecrown patch above the bill in adults. Young birds lack the red forehead and sexes are similar in appearance. The sample was collected from Mlawula Game Reserve, Eswatini, under permit from The Kingdom of Eswatini Big Game Parks. This assembly has been produced as part of the G10K-VGP and B10K projects. Sequencing was conducted with PacBio long reads, Bionano optical maps, and 10X Genomics linked reads at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo and Erich Jarvis, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. More...
AccessionPRJNA641122
TypeUmbrella project
OrganismPogoniulus pusillus[Taxonomy ID: 488313]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Piciformes; Lybiidae; Pogoniulus; Pogoniulus pusillus
SubmissionRegistration date: 22-Jun-2020
Vertebrate Genomes Project
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)45190
WGS master2
Transcript44843
SRA Experiments13
Protein Sequences36973
Other datasets
BioSample3
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases473
Data volume, Tbytes0.16
This project encompasses the following 6 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
Scaffolds
SRA or Trace
Total

2
1
3
6
BioProject
accession
Assembly
level
NameTitle
PRJNA637953 ChromosomesPogoniulus pusillusPogoniulus pusillus (red-fronted tinkerbird) genome, bPogPus1, primary haplotype (Vertebrate Genomes Project)
PRJNA637954 ScaffoldsPogoniulus pusillusPogoniulus pusillus (red-fronted tinkerbird) genome, bPogPus1, alternate haplotype (Vertebrate Genomes Project)
PRJNA1092276 ChromosomesPogoniulus pusillusPogoniulus pusillus isolate:bPogPus1 RefSeq Genome sequencing and assembly (NCBI)
PRJNA1008668 SRA or TracePogoniulus pusillus (red-fronted tinkerbird) genome, bPogPus1, sequence dataPogoniulus pusillus (red-fronted tinkerbird) genome, bPogPus1, sequence data (G10K)
PRJNA1070804 SRA or TracePogoniulus pusillus (red-fronted tinkerbird) transcriptome, bPogPus2, sequence dataPogoniulus pusillus (red-fronted tinkerbird) transcriptome, bPogPus2, sequence data (Vertebrate Genomes Project)
List all 6 'Genome sequencing' projects...

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