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GIGA is a collaborative network of diverse scientists to tackle major challenges (e.g., species selection, sample collection and storage, sequence assembly, annotation, analytical tools) associated with genome/transcriptome sequencing across a large taxonomic spectrum. It aims to promote standards that will facilitate comparative approaches to invertebrate genomics and collaborations across the international scientific community.
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 174286 |
| WGS master | 10 |
| TSA master | 10 |
| Genomic DNA | 21 |
| Transcript | 152344 |
| SRA Experiments | 506 |
| Protein Sequences | 142747 |
| Publications |
| PubMed | 16 |
| PMC | 13 |
| Other datasets |
| BioSample | 430 |
| Assembly | 9 |
Aquatic non-vertebrate metazoa encompasses the following 25 sub-projects:
| Project Type | Number of Projects |
| Genome sequencing |
3
2
5
9
19
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1004233 | Chromosomes | A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes | A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes (American Museum of Natural...) | | PRJNA639707 | SRA or Trace | A naturally heteroplasmic clam shows the effects of genetic bottleneck on paternal mtDNA | A naturally heteroplasmic clam shows the effects of genetic bottleneck on paternal mtDNA (University of Bologna) | | PRJNA734913 | Contigs | Amphibalanus amphitrite | Amphibalanus amphitrite: Genome Sequencing and assembly (Naval Research Laboratory) | | PRJNA751628 | Contigs | Amphibalanus amphitrite | Amphibalanus amphitrite RefSeq Genome sequencing and assembly (NCBI) | | PRJNA498596 | Contigs | Bugula neritina | Bugula neritina isolate:Kwan_BN1 Genome sequencing and assembly (Global Invertebrate Genomics...) |
List all 19 'Genome sequencing' projects...BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1004233 | Chromosomes | A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes | A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes (American Museum of Natural...) | | PRJNA639707 | SRA or Trace | A naturally heteroplasmic clam shows the effects of genetic bottleneck on paternal mtDNA | A naturally heteroplasmic clam shows the effects of genetic bottleneck on paternal mtDNA (University of Bologna) | | PRJNA734913 | Contigs | Amphibalanus amphitrite | Amphibalanus amphitrite: Genome Sequencing and assembly (Naval Research Laboratory) | | PRJNA751628 | Contigs | Amphibalanus amphitrite | Amphibalanus amphitrite RefSeq Genome sequencing and assembly (NCBI) | | PRJNA498596 | Contigs | Bugula neritina | Bugula neritina isolate:Kwan_BN1 Genome sequencing and assembly (Global Invertebrate Genomics...) | | PRJNA319376 | SRA or Trace | Cladobranchia | RNA-Seq of species within Cladobranchia (Mollusca: Gastropoda: Heterobranchia) for phylogenomics. (University of Maryland, College...) | | PRJNA1032645 | SRA or Trace | Fraginae Comparative Transcriptome | Fraginae Comparative Transcriptome (University of Colorado Boulder) | | PRJNA1162570 | SRA or Trace | Fraginae MitoGenome | Fraginae MitoGenome (University of Colorado Boulder) | | PRJNA983812 | Chromosomes | Nematomorpha | Nematomorpha Genome sequencing and assembly (Harvard University) | | PRJNA614970 | Scaffolds | Pollicipes pollicipes | Pollicipes pollicipes isolate:AB1234 Genome sequencing and assembly (George Washington University) | | PRJNA544137 | SRA or Trace | Polycladida | Phylogenomics of Polycladida using RNA-Seq (University of Maryland, College...) | | PRJNA807867 | Contigs | Ruditapes philippinarum | Ruditapes philippinarum isolate:M1 Genome sequencing and assembly (University of Bologna) | | PRJNA1033681 | Contigs | Ruditapes philippinarum | Ruditapes philippinarum isolate:M1 RefSeq Genome sequencing (NCBI) | | PRJNA1047495 | SRA or Trace | Scurria scurra | Scurria scurra Genome sequencing (Universidad Austral de Chile) | | PRJNA1047508 | SRA or Trace | Scurria viridula | Scurria viridula Genome sequencing and assembly (Universidad Austral de Chile) | | PRJNA1047498 | SRA or Trace | Scurria zebrina | Scurria zebrina Genome sequencing and assembly (Universidad Austral de Chile) | | PRJNA780324 | SRA or Trace | Transcriptome phylogenies support ancient evolutionary transitions in bioluminescence traits of cypridinid ostracods | Transcriptome phylogenies support ancient evolutionary transitions in bioluminescence traits of cypridinid ostracods (University of California,...) | | PRJEB53300 | Chromosomes | Tridacna crocea | Tridacna crocea (giant clam) genome assembly, xbTriCroc3 (WELLCOME SANGER INSTITUTE) | | PRJNA901945 | Scaffolds | Tubiluchus corallicola | Tubiluchus corallicola isolate:MCZ IZ 153158 Genome sequencing and assembly (Harvard University) |
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| Transcriptome or Gene expression | 6 |
BioProject
accession | Name | Title |
|---|
| PRJNA279396 | Austraeolis stearnsi | Austraeolis stearnsi Transcriptome or Gene expression (University of Maryland, College...) | | PRJNA663558 | Cinachyrella | Effects of crude oil and dispersant exposure from the Deepwater Horizon oil spill on sponges from the Cinachyrella genus (Global Invertebrate Genomic...) | | PRJNA672267 | RNA-Seq of somatic tissues and gonads of Ruditapes philippinarum | RNA-Seq of somatic tissues and gonads of Ruditapes philippinarum (University of Bologna) | | PRJNA170478 | Ruditapes decussatus | Comparative transcriptomics in two bivalve species offers different perspectives on the evolution of sex-biased genes (University of Southern California) | | PRJNA68513 | Ruditapes philippinarum | De Novo assembly of the Manila clam Ruditapes philippinarum transcriptome provides new insights into expression bias, mitochondrial doubly uniparental inheritance and sex determination (University of Southern California) |
List all 6 'Transcriptome or Gene expression' projects...BioProject
accession | Name | Title |
|---|
| PRJNA279396 | Austraeolis stearnsi | Austraeolis stearnsi Transcriptome or Gene expression (University of Maryland, College...) | | PRJNA663558 | Cinachyrella | Effects of crude oil and dispersant exposure from the Deepwater Horizon oil spill on sponges from the Cinachyrella genus (Global Invertebrate Genomic...) | | PRJNA672267 | RNA-Seq of somatic tissues and gonads of Ruditapes philippinarum | RNA-Seq of somatic tissues and gonads of Ruditapes philippinarum (University of Bologna) | | PRJNA170478 | Ruditapes decussatus | Comparative transcriptomics in two bivalve species offers different perspectives on the evolution of sex-biased genes (University of Southern California) | | PRJNA68513 | Ruditapes philippinarum | De Novo assembly of the Manila clam Ruditapes philippinarum transcriptome provides new insights into expression bias, mitochondrial doubly uniparental inheritance and sex determination (University of Southern California) | | PRJNA641185 | Scalable culture of the nudibranch Berghia stephanieae, an emerging research organism for molluscan development and neuroscience | Scalable culture of the nudibranch Berghia stephanieae, an emerging research organism for molluscan development and neuroscience (University of California,...) |
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