Borrelia burgdorferi sensu lato (ID 662729) - BioProject

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Accession: PRJNA662729 ID: 662729

Borrelia burgdorferi sensu lato

Borrelia burgdorferi species complex population genomics study with the focus on Borrelia garinii.

We compared the genomic diversity of isolates of the Borrelia burgdorferi species complex cultured from tick or patients suffering from Lyme disease to identify markers potentially associated with a higher ability to infect humans.

Accession	PRJNA662729
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 10-Sep-2020 INRAe
Relevance	Epidemiology

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	72
SRA Experiments	72
Other datasets
BioSample	75
Assembly	72

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

72
72

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_017912305.1	JAEIQU000000000	SAMN16577234	IBS59	Borreliella bavariensis
GCA_017911315.1	JAEIPF000000000	SAMN16577242	IPT92	Borreliella burgdorferi
GCA_017911445.1	JAEIPK000000000	SAMN16577241	IPT77	Borreliella burgdorferi
GCA_017911435.1	JAEIPI000000000	SAMN16577296	IPT86	Borreliella garinii
GCA_017911385.1	JAEIPH000000000	SAMN16577246	IPT89	Borreliella garinii
GCA_017911375.1	JAEIPG000000000	SAMN16577297	IPT91	Borreliella garinii
GCA_017911335.1	JAEIPD000000000	SAMN16577299	IPT98	Borreliella garinii
GCA_017911025.1	JAEIRJ000000000	SAMN16577261	IPT144	Borreliella garinii
GCA_017911015.1	JAEIOV000000000	SAMN16577254	TSK5	Borreliella garinii
GCA_017910995.1	JAEIOU000000000	SAMN16577255	TWA	Borreliella garinii
GCA_017911325.1	JAEIPC000000000	SAMN16577247	L8	Borreliella garinii
GCA_017911295.1	JAEIPE000000000	SAMN16577298	IPT96	Borreliella garinii
GCA_017911275.1	JAEIPA000000000	SAMN16577249	T24	Borreliella garinii
GCA_017911255.1	JAEIOX000000000	SAMN16577252	TSK29	Borreliella garinii
GCA_017911225.1	JAEIOZ000000000	SAMN16577250	TLSII	Borreliella garinii
GCA_017911215.1	JAEIPB000000000	SAMN16577248	T17b	Borreliella garinii
GCA_017911195.1	JAEIOY000000000	SAMN16577251	TSK25	Borreliella garinii
GCA_017911175.1	JAEIOW000000000	SAMN16577253	TSK39	Borreliella garinii
GCA_017911635.1	JAEIPS000000000	SAMN16577290	IPT189	Borreliella garinii
GCA_017911615.1	JAEIPQ000000000	SAMN16577291	IPT200	Borreliella garinii
GCA_017911545.1	JAEIPN000000000	SAMN16577293	IPT74	Borreliella garinii
GCA_017911535.1	JAEIRE000000000	SAMN16577278	IPT32	Borreliella garinii
GCA_017911505.1	JAEIPM000000000	SAMN16577294	IPT75	Borreliella garinii
GCA_017911495.1	JAEIRA000000000	SAMN16577292	IPT34	Borreliella garinii
GCA_017911475.1	JAEIPL000000000	SAMN16577240	IPT76	Borreliella garinii
GCA_017912185.1	JAEIQO000000000	SAMN16577280	IPT108	Borreliella garinii
GCA_017912175.1	JAEIQM000000000	SAMN16577245	IPT114	Borreliella garinii
GCA_017912145.1	JAEIQL000000000	SAMN16577281	IPT115	Borreliella garinii
GCA_017912135.1	JAEIQK000000000	SAMN16577258	IPT116	Borreliella garinii
GCA_017911855.1	JAEIQA000000000	SAMN16577269	IPT175	Borreliella garinii
GCA_017911865.1	JAEIQD000000000	SAMN16577267	IPT161	Borreliella garinii
GCA_017911845.1	JAEIQC000000000	SAMN16577268	IPT167	Borreliella garinii
GCA_017911815.1	JAEIRD000000000	SAMN16577273	IPT182	Borreliella garinii
GCA_017911775.1	JAEIPX000000000	SAMN16577272	IPT178	Borreliella garinii
GCA_017911785.1	JAEIPZ000000000	SAMN16577270	IPT176	Borreliella garinii
GCA_017911675.1	JAEIPR000000000	SAMN16577275	IPT195	Borreliella garinii
GCA_017912295.1	JAEIQR000000000	SAMN16577237	IBS8	Borreliella garinii
GCA_017912275.1	JAEIQS000000000	SAMN16577236	IBS7	Borreliella garinii
GCA_017912255.1	JAEIQP000000000	SAMN16577256	IPT106	Borreliella garinii
GCA_017912235.1	JAEIQQ000000000	SAMN16577238	IBS9	Borreliella garinii
GCA_017912455.1	JAEIQX000000000	SAMN16577229	IBS2	Borreliella garinii
GCA_017912435.1	JAEIQY000000000	SAMN16577228	IBS18	Borreliella garinii
GCA_017912405.1	JAEIQV000000000	SAMN16577232	IBS3	Borreliella garinii
GCA_017912395.1	JAEIRM000000000	SAMN16577231	IBS29	Borreliella garinii
GCA_017912375.1	JAEIQW000000000	SAMN16577230	IBS20	Borreliella garinii
GCA_017912335.1	JAEIQT000000000	SAMN16577235	IBS6	Borreliella garinii
GCA_017912345.1	JAEIRL000000000	SAMN16577233	IBS35	Borreliella garinii
GCA_017912085.1	JAEIQJ000000000	SAMN16577282	IPT123	Borreliella garinii
GCA_017912065.1	JAEIQH000000000	SAMN16577283	IPT136	Borreliella garinii
GCA_017912055.1	JAEIQI000000000	SAMN16577239	IPT134	Borreliella garinii
GCA_017912035.1	JAEIQG000000000	SAMN16577284	IPT139	Borreliella garinii
GCA_017912015.1	JAEIRC000000000	SAMN16577262	IPT145	Borreliella garinii
GCA_017911995.1	JAEIRF000000000	SAMN16577265	IPT155	Borreliella garinii
GCA_017911955.1	JAEIQE000000000	SAMN16577285	IPT158	Borreliella garinii
GCA_017911945.1	JAEIQF000000000	SAMN16577264	IPT150	Borreliella garinii
GCA_017911935.1	JAEIRB000000000	SAMN16577263	IPT147	Borreliella garinii
GCA_017912515.1	JAEIRH000000000	SAMN16577244	3B56	Borreliella garinii
GCA_017912495.1	JAEIQZ000000000	SAMN16577243	103B2	Borreliella garinii
GCA_017911915.1	JAEIRI000000000	SAMN16577266	IPT160	Borreliella valaisiana
GCA_017912205.1	JAEIQN000000000	SAMN16577257	IPT111	Borreliella valaisiana
GCA_017911665.1	JAEIPT000000000	SAMN16577274	IPT188	Borreliella valaisiana
GCA_017912115.1	JAEIRG000000000	SAMN16577259	IPT121	Borreliella valaisiana
GCA_017911715.1	JAEIPV000000000	SAMN16577288	IPT186	Borreliella valaisiana
GCA_017911655.1	JAEIPU000000000	SAMN16577289	IPT187	Borreliella valaisiana
GCA_017911745.1	JAEIPW000000000	SAMN16577287	IPT184	Borreliella valaisiana
GCA_017911735.1	JAEIPY000000000	SAMN16577271	IPT177	Borreliella valaisiana
GCA_017911835.1	JAEIQB000000000	SAMN16577286	IPT174	Borreliella valaisiana
GCA_017911575.1	JAEIPO000000000	SAMN16577277	IPT31	Borreliella valaisiana
GCA_017911585.1	JAEIPP000000000	SAMN16577276	IPT201	Borreliella valaisiana
GCA_017911415.1	JAEIPJ000000000	SAMN16577295	IPT85	Borreliella valaisiana
GCA_017911065.1	JAEIRK000000000	SAMN16577260	IPT14	Borreliella valaisiana
GCA_018282055.1	JAGKHR000000000	SAMN16577279	IPT102	Borreliella valaisiana

SRA Data Details

Parameter	Value
Data volume, Gbases	229
Data volume, Tbytes	0.12

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Borrelia burgdorferi sensu lato

Borrelia burgdorferi species complex population genomics study with the focus on Borrelia garinii.

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