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Accession: PRJDB9036 ID: 668302

wastewater metagenome

Metagenomic survey and whole genome sequencing of antimicrobial resistant bacteria in Japanese hospital sewage

This project is related to metagenomic survey and genomic epidemiology analysis of antimicrobial resistance bacteria (in particular, carbapenem and/or beta-lactam resistant Enterobacteriaceae) in Japanese hospital sewage.
AccessionPRJDB9036
Organismwastewater metagenome[Taxonomy ID: 527639]
unclassified sequences; metagenomes; ecological metagenomes; wastewater metagenome
SubmissionRegistration date: 8-Oct-2020
Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (Genomic DNA)177
SRA Experiments326
Protein Sequences160989
Other datasets
BioSample326
Assembly32
Assembly details:
Assembly levelNumber of Assemblies
32
32
AssemblyLevelChrsBioSampleStrainTaxonomy
GCA_015134625.1Complete genomeSAMD00195843
STW0522-01
GCA_015134795.1Complete genomeSAMD00195860
STW0522-19
GCA_015138175.1Complete genomeSAMD00195990
STN0717-72
GCA_015137255.1Complete genomeSAMD00195955
STN0717-36
GCA_015137095.1Complete genomeSAMD00195946
STN0717-27
GCA_015135215.1Complete genomeSAMD00195870
STW0522-30
GCA_015135075.1Complete genomeSAMD00195868
STW0522-27
GCA_015134935.1Complete genomeSAMD00195867
STW0522-26
GCA_015137655.1Complete genomeSAMD00195975
STN0717-56
GCA_015138375.1Complete genomeSAMD00195991
STN0717-73
GCA_015137855.1Complete genomeSAMD00195978
STN0717-60
GCA_015137995.1Complete genomeSAMD00195982
STN0717-64
GCA_015137465.1Complete genomeSAMD00195972
STN0717-53
GCA_015136055.1Complete genomeSAMD00195902
STW0522-62
GCA_015135855.1Complete genomeSAMD00195900
STW0522-60
GCA_015135595.1Complete genomeSAMD00195891
STW0522-51
GCA_015136315.1Complete genomeSAMD00195906
STW0522-66
GCA_015135355.1Complete genomeSAMD00195871
STW0522-31
GCA_015136895.1Complete genomeSAMD00195939
STN0717-20
GCA_015136715.1Complete genomeSAMD00195931
STN0717-11
GCA_015138575.1Complete genomeSAMD00196001
THO-003
GCA_015139735.1Complete genomeSAMD00196013
THO-015
GCA_015139375.1Complete genomeSAMD00196008
THO-010
GCA_015139155.1Complete genomeSAMD00196006
THO-008
GCA_015138955.1Complete genomeSAMD00196004
THO-006
GCA_015139575.1Complete genomeSAMD00196009
THO-011
GCA_015139975.1Complete genomeSAMD00196015
THO-017
GCA_015138775.1Complete genomeSAMD00196002
THO-004
GCA_015135515.1Complete genomeSAMD00195879
STW0522-39
GCA_015135575.1Complete genomeSAMD00195884
STW0522-44
GCA_015136515.1Complete genomeSAMD00195912
STW0522-72
GCA_015135635.1Complete genomeSAMD00195896
STW0522-56
SRA Data Details
ParameterValue
Data volume, Gbases210
Data volume, Mbytes96349

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