The 2017 BABS Genome project sequenced and de novo assembled the genomes of two venomous Australian snakes: the mainland tiger snake and eastern brown snake. The primary sequencing and assembly method used was 10x Genomics linked read sequencing, producing a primary and alternative assembly for each genome.
| Accession | PRJEB30384 |
| Type | Umbrella project |
| Submission | Registration date: 19-Dec-2020
UNIVERSITY OF NEW SOUTH WALES |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (WGS master) | 4 |
| SRA Experiments | 4 |
| Other datasets |
| BioSample | 4 |
| Assembly | 4 |
This project encompasses the following 6 sub-projects:
| Project Type | Number of Projects |
| Genome sequencing |
4
2
6
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJEB29451 | Scaffolds | Alternative scaffolds for de novo whole genome sequencing of the eastern brown snake, Pseudonaja textilis. | Alternative scaffolds for de novo whole genome sequencing of the eastern brown snake, Pseudonaja textilis. (UNIVERSITY OF NEW SOUTH WALES) | | PRJEB29452 | Scaffolds | Alternative scaffolds for de novo whole genome sequencing of the mainland tiger snake, Notechis scutatus. | Alternative scaffolds for de novo whole genome sequencing of the mainland tiger snake, Notechis scutatus. (UNIVERSITY OF NEW SOUTH WALES) | | PRJEB27869 | Scaffolds | Eastern brown snake genome project | De novo whole genome sequencing of the eastern brown snake, Pseudonaja textilis. (UNIVERSITY OF NEW SOUTH WALES) | | PRJEB27871 | Scaffolds | Mainland tiger snake genome project | De novo whole genome sequencing of the mainland tiger snake, Notechis scutatus (UNIVERSITY OF NEW SOUTH WALES) | | PRJNA1149914 | SRA or Trace | Notechis scutatus | Notechis scutatus (Mainland Tiger Snake), rNotScu1, chromosome-level genome assembly (The University of Western...) |
List all 6 'Genome sequencing' projects...BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJEB29451 | Scaffolds | Alternative scaffolds for de novo whole genome sequencing of the eastern brown snake, Pseudonaja textilis. | Alternative scaffolds for de novo whole genome sequencing of the eastern brown snake, Pseudonaja textilis. (UNIVERSITY OF NEW SOUTH WALES) | | PRJEB29452 | Scaffolds | Alternative scaffolds for de novo whole genome sequencing of the mainland tiger snake, Notechis scutatus. | Alternative scaffolds for de novo whole genome sequencing of the mainland tiger snake, Notechis scutatus. (UNIVERSITY OF NEW SOUTH WALES) | | PRJEB27869 | Scaffolds | Eastern brown snake genome project | De novo whole genome sequencing of the eastern brown snake, Pseudonaja textilis. (UNIVERSITY OF NEW SOUTH WALES) | | PRJEB27871 | Scaffolds | Mainland tiger snake genome project | De novo whole genome sequencing of the mainland tiger snake, Notechis scutatus (UNIVERSITY OF NEW SOUTH WALES) | | PRJNA1149914 | SRA or Trace | Notechis scutatus | Notechis scutatus (Mainland Tiger Snake), rNotScu1, chromosome-level genome assembly (The University of Western...) | | PRJNA1149912 | SRA or Trace | Pseudonaja textilis | Pseudonaja textilis (Eastern Brown Snake), rPseTex1, chromosome-level genome assembly (University of Western Australia) |
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