Metagenomes of cyanobacteria and their associated ... (ID 688935) - BioProject

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Accession: PRJNA688935 ID: 688935

Metagenomes of cyanobacteria and their associated microbial communities from various terrestrial environments

The goal of this study is to examine phylogenomic relationships and photosynthetic pigment evolution in terrestrial cyanobacteria.

Accession	PRJNA688935
Type	Umbrella project
Submission	Registration date: 31-Dec-2020 DOE Joint Genome Institute
Related Resources	GOLD
Relevance	Environmental
Locus Tag Prefix	JHR85

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	94
SRA Experiments	45
Publications
PubMed	1
PMC	1
Other datasets
BioSample	95
Assembly	94

SRA Data Details

Parameter	Value
Data volume, Gbases	552
Data volume, Tbytes	0.17

Metagenomes of cyanobacteria and their associated microbial communities from various terrestrial environments encompasses the following 46 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Contigs

BioProject accession	Assembly level	Name	Title
PRJNA727914	Contigs	Cyanobacteria Metagenome Assembled Genomes extracted from total metagenome of mixed cultures	Cyanobacteria Metagenome Assembled Genomes extracted from total metagenome of mixed cultures (University of California,...)
PRJNA617093	Contigs	algae metagenome	Aetokthonos hydrillicola B3-Florida and co-occurring heterotrophs from underwater plant surface from South Carolina, United States - 20190130_2 (DOE Joint Genome Institute)
PRJNA617094	Contigs	algae metagenome	Aphanothece sp. CMT-3BRIN-NPC111 and co-occurring heterotrophs from soil crust from Clark Mountains Wilderness, California, United States - 20190225_6 (DOE Joint Genome Institute)
PRJNA617095	Contigs	algae metagenome	Brasilonema angustatum HA4187-MV1 and co-occurring heterotrophs from soil from Manoa Valley, Honolulu, Hawaii, United States - 20190130_7 (DOE Joint Genome Institute)
PRJNA617096	Contigs	algae metagenome	Calothrix sp. FI2-JRJ7 and co-occurring heterotrophs from soil from Red Pass Lake area, Fort Irwin, California, United States - 20190112_9 (DOE Joint Genome Institute)

List all 46 'Genome sequencing' projects...

BioProject accession	Assembly level	Name	Title
PRJNA727914	Contigs	Cyanobacteria Metagenome Assembled Genomes extracted from total metagenome of mixed cultures	Cyanobacteria Metagenome Assembled Genomes extracted from total metagenome of mixed cultures (University of California,...)
PRJNA617093	Contigs	algae metagenome	Aetokthonos hydrillicola B3-Florida and co-occurring heterotrophs from underwater plant surface from South Carolina, United States - 20190130_2 (DOE Joint Genome Institute)
PRJNA617094	Contigs	algae metagenome	Aphanothece sp. CMT-3BRIN-NPC111 and co-occurring heterotrophs from soil crust from Clark Mountains Wilderness, California, United States - 20190225_6 (DOE Joint Genome Institute)
PRJNA617095	Contigs	algae metagenome	Brasilonema angustatum HA4187-MV1 and co-occurring heterotrophs from soil from Manoa Valley, Honolulu, Hawaii, United States - 20190130_7 (DOE Joint Genome Institute)
PRJNA617096	Contigs	algae metagenome	Calothrix sp. FI2-JRJ7 and co-occurring heterotrophs from soil from Red Pass Lake area, Fort Irwin, California, United States - 20190112_9 (DOE Joint Genome Institute)
PRJNA617097	Contigs	algae metagenome	Drouetiella hepatica UHER 2000/2452 and co-occurring heterotrophs from rock surface from Slovak Paradise National Park, Hrabusice, Kosice Region, Slovakia - 20190125_17 (DOE Joint Genome Institute)
PRJNA617098	Contigs	algae metagenome	Gloeocapsa sp. UFS-A4-WI-NPMV-4B04 and co-occurring heterotrophs from desert soil from Utah, United States - 20190125_19 (DOE Joint Genome Institute)
PRJNA617099	Contigs	algae metagenome	Hassallia sp. WJT32-NPBG1 and co-occurring heterotrophs from soil crust from Mojave Desert, Joshua Tree National Park, California, United States - 20190126_21 (DOE Joint Genome Institute)
PRJNA617100	Contigs	algae metagenome	Iphinoe sp. HA4291-MV1 and co-occurring heterotrophs from soil from Maunawili Falls, Hawaii, United States - 20190125_22 (DOE Joint Genome Institute)
PRJNA617101	Contigs	algae metagenome	Nostoc desertorum CM1-VF14 and co-occurring heterotrophs from soil from Clark Mountains, San Bernardino, California, United States - 20190125_33 (DOE Joint Genome Institute)
PRJNA617102	Contigs	algae metagenome	Pegethrix bostrychoides GSE-TBD4-15B and co-occurring heterotrophs from rock surface from Grand Staircase-escalante National Monument, Utah, United States - 20190225_38 (DOE Joint Genome Institute)
PRJNA617103	Contigs	algae metagenome	Plectolyngbya sp. WJT66-NPBG17 and co-occurring heterotrophs from soil crust from Mojave Desert, Joshua Tree National Park, California, United States - 20190201_42 (DOE Joint Genome Institute)
PRJNA617104	Contigs	algae metagenome	Pleurocapsa minor HA4230-MV1 and co-occurring heterotrophs from cement wall surface from Nuuanu Pali Lookout, Hawaii, United States - 20190126_45 (DOE Joint Genome Institute)
PRJNA617105	Contigs	algae metagenome	Scytolyngbya sp. HA4215-MV1 and co-occurring heterotrophs from Freshwater from Laie Falls, Oahu, Hawaii, United States - 20190130_49 (DOE Joint Genome Institute)
PRJNA617106	Contigs	algae metagenome	Scytonema hyalinum WJT4-NPBG1 and co-occurring heterotrophs from soil crust from Mojave Desert, Joshua Tree National Park, California, United States - 20190201_50 (DOE Joint Genome Institute)
PRJNA617107	Contigs	algae metagenome	Stenomitos rutilans HA7619-LM2 and co-occurring heterotrophs from cave wall surface from Waikapalae cave, Hawaii, United States - 20190126_53 (DOE Joint Genome Institute)
PRJNA617108	Contigs	algae metagenome	Symplocastrum torsivum CPER-KK1 and co-occurring heterotrophs from soil from Central Plains Experimental Range, Colorado, United States - 20190111_54 (DOE Joint Genome Institute)
PRJNA621654	Contigs	algae metagenome	Lyngbya sp. HA4199-MV5 and co-occurring heterotrophs from soil from Ahupuaa O Kahana State Park, Hawaii, United States - 20181012_27A (DOE Joint Genome Institute)
PRJNA621655	Contigs	algae metagenome	Desmonostoc geniculatum HA4340-LM1 and co-occurring heterotrophs from cave wall surface from Maniniholo cave, Kauai, Hawaii, United States - 20181024_15A (DOE Joint Genome Institute)
PRJNA621656	Contigs	algae metagenome	Nodosilinea sp. WJT8-NPBG4 and co-occurring heterotrophs from soil from Pinto Basin, Colorado Desert, California, United States - 20181029_32A (DOE Joint Genome Institute)
PRJNA621657	Contigs	algae metagenome	Tildeniella nuda ZEHNDER 1965/U140 and co-occurring heterotrophs from rock surface from Stansstaad, Zurih, Switzerland - 20181029_55A (DOE Joint Genome Institute)
PRJNA621658	Contigs	algae metagenome	Aphanothece saxicola GSE-SYN-MK-01-06B and co-occurring heterotrophs from rock surface from Grand Staircase Escalante National Monument, Utah, United States - 20181031_5A (DOE Joint Genome Institute)
PRJNA621659	Contigs	algae metagenome	Goleter apudmare HA4340-LM2 and co-occurring heterotrophs from cave wall surface from Maniniholo cave, Kauai, Hawaii, United States - 20181031_20A (DOE Joint Genome Institute)
PRJNA621660	Contigs	algae metagenome	Trichormus sp. ATA11-4-KO1 and co-occurring heterotrophs from soil from Atacama Desert, Chile - 20181105_1A (DOE Joint Genome Institute)
PRJNA621661	Contigs	algae metagenome	Cyanomargarita calcarea GSE-NOS-MK-12-04C and co-occurring heterotrophs from rock surface from Grand Staircase Escalante National Monument, Utah, United States - 20181105_13A (DOE Joint Genome Institute)
PRJNA621662	Contigs	algae metagenome	Tolypothrix brevis GSE-NOS-MK-07-07A and co-occurring heterotrophs from rock surface from Grand Staircase Escalante National Monument, Utah, United States - 20181105_59A (DOE Joint Genome Institute)
PRJNA621663	Contigs	algae metagenome	Tolypothrix carrinoi HA7290-LM1 and co-occurring heterotrophs from cave wall surface from Makauwahi cave, Kauai, Hawaii, United States - 20181107_10A (DOE Joint Genome Institute)
PRJNA621664	Contigs	algae metagenome	Aphanocapsa sp. GSE-SYN-MK-11-07L and co-occurring heterotrophs from rock surface from Grand Staircase Escalante National Monument, Utah, United States - 20181109_4A (DOE Joint Genome Institute)
PRJNA621665	Contigs	algae metagenome	Oscillatoria tanganyikae FI6-MK23 and co-occurring heterotrophs from soil from Fort Irwin, California, United States - 20181109_37A (DOE Joint Genome Institute)
PRJNA621666	Contigs	algae metagenome	Nostoc indistinguendum CM1-VF10 and co-occurring heterotrophs from soil from Clark Mountains, San Bernardino, California, United States - 20181120_34 (DOE Joint Genome Institute)
PRJNA621669	Contigs	algae metagenome	Brasilonema octagenarum HA4186-MV1 and co-occurring heterotrophs from rock surface from Manoa Valley, Hawaii, United States - 20181204_8 (DOE Joint Genome Institute)
PRJNA621673	Contigs	algae metagenome	Timaviella obliquedivisa GSE-PSE-MK23-08B and co-occurring heterotrophs from rock surface from Grand Staircase Escalante National Monument, Utah, United States - 20181204_58 (DOE Joint Genome Institute)
PRJNA621676	Contigs	algae metagenome	Kastovskya adunca ATA6-11-RM4 and co-occurring heterotrophs from soil from Atacama Desert, Chile - 20181212_24i (DOE Joint Genome Institute)
PRJNA650825	Contigs	algae metagenome	Komarekiella atlantica HA4396-MV6 and co-occurring heterotrophs from cyanobacterial mat from Theobald House, Kauai, HI, United States - 20190625_25 (DOE Joint Genome Institute)
PRJNA650826	Contigs	algae metagenome	Mojavia pulchra JT2-VF2 and co-occurring heterotrophs from desert soil from Cadiz Valley, Joshua Tree National Park, CA, United States - 20190625_29 (DOE Joint Genome Institute)
PRJNA650881	Contigs	algae metagenome	Hormoscilla sp. CMT-3BRIN-NPC48 and co-occurring heterotrophs from soil crust from Clark Mountains Wilderness, California, United States - 20190625_12A (DOE Joint Genome Institute)
PRJNA650882	Contigs	algae metagenome	Desmonostoc vinosum HA7617-LM4 and co-occurring heterotrophs from cave wall surface from Waikapalae cave, Hawaii, United States - 20190625_16 (DOE Joint Genome Institute)
PRJNA650883	Contigs	algae metagenome	Kaiparowitsia implicata GSE-PSE-MK54-09C and co-occurring heterotrophs from soil from Kaiparowits Plateau, Grand Staircase Escalante National Monument, UT, United states - 20190625_23 (DOE Joint Genome Institute)
PRJNA653492	Contigs	algae metagenome	Chroococcus sp. CMT-3BRIN-NPC107 and co-occurring heterotrophs from soil crust from Clark Mountains Wilderness, California, United States - 20190130_11 (DOE Joint Genome Institute)
PRJNA653493	Contigs	algae metagenome	Cyanosarcina radialis HA8281-LM2 and co-occurring heterotrophs from damp rock surface from Makauwahi cave, Hawaii, United States - 20190225_14 (DOE Joint Genome Institute)
PRJNA653494	Contigs	algae metagenome	Pelatocladus maniniholoensis HA4357-MV3 and co-occurring heterotrophs from cave wall surface from Maniniholo cave near Haena, Hawaii, United States - 20190131_40 (DOE Joint Genome Institute)
PRJNA653495	Contigs	algae metagenome	Scytonematopsis contorta HA4267-MV1 and co-occurring heterotrophs from mud from Palolo Valley Trail, Honolulu, Hawaii, United States - 20190126_51 (DOE Joint Genome Institute)
PRJNA653496	Contigs	algae metagenome	Tildeniella torsiva UHER 1998/13D and co-occurring heterotrophs from rock surface from Slovak Paradise National Park, Hrabusice, Kosice Region, Slovakia - 20190130_56 (DOE Joint Genome Institute)
PRJNA677053	Contigs	algae metagenome	Aphanocapsa lilacina HA4352-LM1 and co-occurring heterotrophs from rock surface from Maniniholo cave, near Haena, Kauai, HI, United States - 20190625_3 (DOE Joint Genome Institute)
PRJNA677054	Contigs	algae metagenome	Pleurocapsa minor GSE-CHR-MK-17-07R and co-occurring heterotrophs from sandstone from Lower Calf Creek Falls, Grand Staircase Escalante National Monument, UT, United States - 20190625_44 (DOE Joint Genome Institute)
PRJNA683097	Contigs	algae metagenome	Spirirestis raphaelensis WJT71-NPBG6 and co-occurring heterotrophs from granitic soil from Pinto Wells, Joshua Tree National Park, Colorado Desert, CA, United States - 20190625_52 (DOE Joint Genome Institute)

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