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This umbrella project holds a set of data bioprojects, each representing a laboratory sequencing Bacillus cereus in collaboration with GenomeTrakr's open genomic epidemiology surveillance effort for the real-time monitoring of foodborne pathogens. Automated clustering and genotyping results for these data can be found at NCBI Pathogen Detection (link below).
| Accession | PRJNA692474 |
| Type | Umbrella project |
| Publications | - Published online: Timme R et al., "Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens", One Health Outlook, 2020;2(1)
|
| Submission | Registration date: 15-Jan-2021
FDA |
| Related Resources | |
| Relevance | Agricultural |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 13557 |
| WGS master | 116 |
| SRA Experiments | 242 |
| Protein Sequences | 121446 |
| Other datasets |
| BioSample | 386 |
| Assembly | 116 |
Bacillus cereus encompasses the following 8 sub-projects:
| Project Type | Number of Projects |
| Genome sequencing |
2
3
3
8
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA574468 | Scaffolds | Bacillus cereus | GenomeTrakr Project: US Food and Drug Administration, Center for Food Safety and Applied Nutrition (FDA) | | PRJNA761791 | SRA or Trace | Bacillus cereus | GenomeTrakr Project: Washington State Department of Health (GenomeTrakr Project: Washington...) | | PRJNA768448 | SRA or Trace | Bacillus cereus | GenomeTrakr Project: Maryland Department of Health (Maryland Department of Health) | | PRJNA824078 | No data links | Bacillus cereus | GenomeTrakr Project: NJ Department of Agriculture, Animal Health Diagnostic Laboratory (New Jersey Department of...) | | PRJNA826491 | No data links | Bacillus cereus | GenomeTrakr Project: West Virginia Department of Agriculture (Megan Young) | | PRJNA326742 | Scaffolds | Bacillus cereus | Bacillus cereus complex GenomeTrakr Project FDA-CFSAN (OARSA, CFSAN) | | PRJNA417690 | SRA or Trace | Bacillus cereus | GenomeTrakr Project: Bacillus cereus, New York State Department of Health, Wadsworth Center (FDA/CFSAN/NY_State) | | PRJNA663606 | No data links | Bacillus cytotoxicus | GenomeTrakr Project: US Food and Drug Administration, Center for Food Safety and Applied Nutrition (FDA) |
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