ID 715634 - BioProject

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Accession: PRJNA715634 ID: 715634

Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vivo Combination of Microbe Culture and Metagenomic Sequencing

Use of a novel ex vivo approach combining microbe culture from anaerobically preserved tissue with metagenome sequencing to reveal patient-specific and strain-level differences among bacterial communities in post-operative Crohns disease patients

Accession	PRJNA715634
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Teh JJ et al., "Novel strain-level resolution of Crohn's disease mucosa-associated microbiota via an ex vivo combination of microbe culture and metagenomic sequencing.", ISME J, 2021 Nov;15(11):3326-3338
Submission	Registration date: 19-Mar-2021 University of Queensland
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	47
SRA Experiments	117
Publications
PubMed	1
PMC	1
Other datasets
BioSample	164
Assembly	47

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

47
47

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_019012825.1	JAGIRP000000000	SAMN18355297	CD33_MAG30	Acidaminococcus intestini
GCA_019012455.1	JAGISE000000000	SAMN18355312	CD34_MAG45	Agathobacter rectalis
GCA_019013205.1	JAGIQT000000000	SAMN18355275	CD12_MAG8	Anaerostipes hadrus
GCA_019013355.1	JAGIQM000000000	SAMN18355268	CD10_MAG1	Bacteroides fragilis
GCA_019013265.1	JAGIQU000000000	SAMN18355276	CD12_MAG9	Bacteroides ovatus
GCA_019012785.1	JAGIRQ000000000	SAMN18355298	CD33_MAG31	Bacteroides ovatus
GCA_019012605.1	JAGIRY000000000	SAMN18355306	CD34_MAG39	Bacteroides uniformis
GCA_019013225.1	JAGIQW000000000	SAMN18355278	CD12_MAG11	Blautia wexlerae
GCA_019013145.1	JAGIRA000000000	SAMN18355282	CD12_MAG15	Clostridium sp.
GCA_019013085.1	JAGIRB000000000	SAMN18355283	CD12_MAG16	Clostridium sp.
GCA_019012895.1	JAGIRI000000000	SAMN18355290	CD14_MAG23	Clostridium sp.
GCA_019013345.1	JAGIQN000000000	SAMN18355269	CD10_MAG2	Coprobacillus sp.
GCA_019012545.1	JAGISA000000000	SAMN18355308	CD34_MAG41	Coprobacillus sp.
GCA_019012705.1	JAGIRS000000000	SAMN18355300	CD33_MAG33	Coprococcus sp.
GCA_019012735.1	JAGIRR000000000	SAMN18355299	CD33_MAG32	Enterocloster clostridioformis
GCA_019012715.1	JAGIRT000000000	SAMN18355301	CD33_MAG34	Enterococcus faecalis
GCA_019012445.1	JAGISB000000000	SAMN18355309	CD34_MAG42	Enterococcus faecalis
GCA_019012665.1	JAGIRU000000000	SAMN18355302	CD33_MAG35	Enterococcus faecium
GCA_019013325.1	JAGIQO000000000	SAMN18355270	CD10_MAG3	Enterococcus faecium
GCA_019012555.1	JAGISC000000000	SAMN18355310	CD34_MAG43	Enterococcus faecium
GCA_019012965.1	JAGIRK000000000	SAMN18355292	CD14_MAG25	Erysipelotrichaceae bacterium
GCA_019012885.1	JAGIRJ000000000	SAMN18355291	CD14_MAG24	Escherichia coli
GCA_019013045.1	JAGIRC000000000	SAMN18355284	CD12_MAG17	Escherichia coli
GCA_019012685.1	JAGIRV000000000	SAMN18355303	CD33_MAG36	Escherichia coli
GCA_019013305.1	JAGIQP000000000	SAMN18355271	CD10_MAG4	Escherichia coli
GCA_019012525.1	JAGISD000000000	SAMN18355311	CD34_MAG44	Escherichia coli
GCA_019012925.1	JAGIRL000000000	SAMN18355293	CD14_MAG26	Fusobacterium sp.
GCA_019012805.1	JAGIRM000000000	SAMN18355294	CD14_MAG27	Mediterraneibacter gnavus
GCA_019013365.1	JAGIQQ000000000	SAMN18355272	CD10_MAG5	Morganella morganii
GCA_019013285.1	JAGIQR000000000	SAMN18355273	CD10_MAG6	Parabacteroides distasonis
GCA_019012645.1	JAGIRW000000000	SAMN18355304	CD33_MAG37	Parabacteroides distasonis
GCA_019013055.1	JAGIRD000000000	SAMN18355285	CD12_MAG18	Peptostreptococcus anaerobius
GCA_019013025.1	JAGIRF000000000	SAMN18355287	CD14_MAG20	Phocaeicola vulgatus
GCA_019013185.1	JAGIQV000000000	SAMN18355277	CD12_MAG10	Phocaeicola vulgatus
GCA_019012865.1	JAGIRN000000000	SAMN18355295	CD14_MAG28	Streptococcus agalactiae
GCA_019013005.1	JAGIRE000000000	SAMN18355286	CD12_MAG19	Streptococcus anginosus
GCA_019013245.1	JAGIQS000000000	SAMN18355274	CD10_MAG7	Streptococcus anginosus
GCA_019012505.1	JAGISG000000000	SAMN18355314	CD34_MAG47	Streptococcus lutetiensis
GCA_019012835.1	JAGIRO000000000	SAMN18355296	CD14_MAG29	Streptococcus parasanguinis
GCA_019012625.1	JAGIRX000000000	SAMN18355305	CD33_MAG38	Sutterella wadsworthensis
GCA_019012945.1	JAGIRH000000000	SAMN18355289	CD14_MAG22	Thomasclavelia ramosa
GCA_019013105.1	JAGIQZ000000000	SAMN18355281	CD12_MAG14	Thomasclavelia ramosa
GCA_019013165.1	JAGIQX000000000	SAMN18355279	CD12_MAG12	[Clostridium] innocuum
GCA_019013125.1	JAGIQY000000000	SAMN18355280	CD12_MAG13	[Clostridium] nexile
GCA_019012985.1	JAGIRG000000000	SAMN18355288	CD14_MAG21	[Clostridium] nexile
GCA_019012585.1	JAGIRZ000000000	SAMN18355307	CD34_MAG40	[Clostridium] nexile
GCA_019012465.1	JAGISF000000000	SAMN18355313	CD34_MAG46	bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	212
Data volume, Tbytes	0.10

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Novel Strain Level Resolution of Crohns Disease Mucosa-Associated Microbiota via an ex vivo Combination of Microbe Culture and Metagenomic Sequencing

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